Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:37840648-38070672

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38666 18 36967631 to 37841873 874242 + protein coding gene predicted gene, 38666
Gm38667 18 36973802 to 37841873 868071 + protein coding gene predicted gene, 38667
Pcdhga1 18 37661945 to 37841870 179925 + protein coding gene protocadherin gamma subfamily A, 1
Pcdhga2 18 37669105 to 37841870 172765 + protein coding gene protocadherin gamma subfamily A, 2
Pcdhga3 18 37674335 to 37841873 167538 + protein coding gene protocadherin gamma subfamily A, 3
Pcdhgb1 18 37680458 to 37841870 161412 + protein coding gene protocadherin gamma subfamily B, 1
Pcdhga4 18 37685400 to 37841870 156470 + protein coding gene protocadherin gamma subfamily A, 4
Pcdhgb2 18 37689859 to 37841872 152013 + protein coding gene protocadherin gamma subfamily B, 2
Pcdhga5 18 37694501 to 37841870 147369 + protein coding gene protocadherin gamma subfamily A, 5
Pcdhga6 18 37707229 to 37841870 134641 + protein coding gene protocadherin gamma subfamily A, 6
Pcdhga7 18 37714834 to 37841873 127039 + protein coding gene protocadherin gamma subfamily A, 7
Pcdhgb4 18 37720554 to 37841870 121316 + protein coding gene protocadherin gamma subfamily B, 4
Pcdhga8 18 37725706 to 37841873 116167 + protein coding gene protocadherin gamma subfamily A, 8
Pcdhgb5 18 37731154 to 37841870 110716 + protein coding gene protocadherin gamma subfamily B, 5
Pcdhga9 18 37736936 to 37841863 104927 + protein coding gene protocadherin gamma subfamily A, 9
Pcdhgb6 18 37742094 to 37841873 99779 + protein coding gene protocadherin gamma subfamily B, 6
Pcdhga10 18 37747188 to 37841870 94682 + protein coding gene protocadherin gamma subfamily A, 10
Pcdhgb7 18 37751779 to 37841870 90091 + protein coding gene protocadherin gamma subfamily B, 7
Pcdhga11 18 37755773 to 37841873 86100 + protein coding gene protocadherin gamma subfamily A, 11
Pcdhgb8 18 37761801 to 37841870 80069 + polymorphic pseudogene protocadherin gamma subfamily B, 8
Pcdhga12 18 37765580 to 37841873 76293 + protein coding gene protocadherin gamma subfamily A, 12
Pcdhgc3 18 37806410 to 37841873 35463 + protein coding gene protocadherin gamma subfamily C, 3
Pcdhgc4 18 37815079 to 37841873 26794 + protein coding gene protocadherin gamma subfamily C, 4
Pcdhgc5 18 37819546 to 37841873 22327 + protein coding gene protocadherin gamma subfamily C, 5
Cpgi9956 18 37841578 to 37841796 218 CpG island CpG island 9956
Diaph1 18 37843601 to 37935476 91875 - protein coding gene diaphanous related formin 1
Mir6979 18 37854605 to 37854660 55 - miRNA gene microRNA 6979
Tssr152992 18 37864511 to 37864517 6 - TSS region transcription start site region 152992
Tssr5290 18 37873254 to 37873255 1 + TSS region transcription start site region 5290
Tssr152993 18 37874347 to 37874380 33 - TSS region transcription start site region 152993
Tssr150766 18 37874547 to 37874550 3 + TSS region transcription start site region 150766
Tssr152994 18 37877760 to 37877772 12 - TSS region transcription start site region 152994
Tssr152995 18 37887954 to 37887956 2 - TSS region transcription start site region 152995
Tssr150767 18 37890899 to 37890923 24 + TSS region transcription start site region 150767
Tssr152996 18 37890983 to 37891000 17 - TSS region transcription start site region 152996
Tssr152997 18 37893373 to 37893411 38 - TSS region transcription start site region 152997
Tssr152998 18 37894201 to 37894214 13 - TSS region transcription start site region 152998
Tssr152999 18 37896141 to 37896155 14 - TSS region transcription start site region 152999
Tssr153000 18 37923382 to 37923386 4 - TSS region transcription start site region 153000
Cpgi9957 18 37934829 to 37935789 960 CpG island CpG island 9957
Tssr153001 18 37935378 to 37935393 15 - TSS region transcription start site region 153001
Tssr153002 18 37935403 to 37935428 25 - TSS region transcription start site region 153002
Tssr153003 18 37935429 to 37935450 21 - TSS region transcription start site region 153003
Hdac3 18 37936971 to 37954988 18017 - protein coding gene histone deacetylase 3
Tssr153004 18 37945048 to 37945064 16 - TSS region transcription start site region 153004
Cpgi9958 18 37954787 to 37956373 1586 CpG island CpG island 9958
Tssr153005 18 37954936 to 37954952 16 - TSS region transcription start site region 153005
Tssr153006 18 37954958 to 37955002 44 - TSS region transcription start site region 153006
Tssr153007 18 37955009 to 37955025 16 - TSS region transcription start site region 153007
Tssr150768 18 37955065 to 37955122 57 + TSS region transcription start site region 150768
Rell2 18 37955084 to 37959179 4095 + protein coding gene RELT-like 2
Tssr150769 18 37955126 to 37955135 9 + TSS region transcription start site region 150769
Tssr150770 18 37955528 to 37955537 9 + TSS region transcription start site region 150770
Tssr150771 18 37955544 to 37955623 79 + TSS region transcription start site region 150771
Tssr150772 18 37955635 to 37955645 10 + TSS region transcription start site region 150772
Tssr150773 18 37955648 to 37955672 24 + TSS region transcription start site region 150773
Tssr150774 18 37955685 to 37955694 9 + TSS region transcription start site region 150774
Fchsd1 18 37957431 to 37969774 12343 - protein coding gene FCH and double SH3 domains 1
Cpgi9959 18 37969404 to 37970198 794 CpG island CpG island 9959
Tssr153008 18 37969742 to 37969782 40 - TSS region transcription start site region 153008
Tssr153009 18 37969970 to 37969981 11 - TSS region transcription start site region 153009
Arap3 18 37972624 to 37997574 24950 - protein coding gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
Mir6981 18 37974503 to 37974617 114 - miRNA gene microRNA 6981
Cpgi9960 18 37985265 to 37985477 212 CpG island CpG island 9960
Tssr153010 18 37987170 to 37987174 4 - TSS region transcription start site region 153010
Mir6980 18 37990887 to 37990945 58 - miRNA gene microRNA 6980
Tssr153011 18 37997528 to 37997540 12 - TSS region transcription start site region 153011
Tssr153012 18 37997543 to 37997569 26 - TSS region transcription start site region 153012
Tssr150775 18 37997673 to 37997706 33 + TSS region transcription start site region 150775
Cpgi9961 18 37998453 to 37998839 386 CpG island CpG island 9961
Tssr153013 18 37998714 to 37998771 57 - TSS region transcription start site region 153013
Tssr153014 18 37999517 to 37999540 23 - TSS region transcription start site region 153014
Gm30093 18 38025003 to 38104400 79397 + lncRNA gene predicted gene, 30093
Cpgi9962 18 38025110 to 38025779 669 CpG island CpG island 9962
Gm41701 18 38049789 to 38061485 11696 - lncRNA gene predicted gene, 41701