Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:37812939-38783041

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231 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42416 18 36952741 to 37840200 887459 + protein coding gene predicted gene, 42416
Gm38666 18 36967631 to 37841873 874242 + protein coding gene predicted gene, 38666
Gm37013 18 36969916 to 37833296 863380 + protein coding gene predicted gene, 37013
Gm38667 18 36973802 to 37841873 868071 + protein coding gene predicted gene, 38667
Gm37388 18 36975941 to 37833296 857355 + protein coding gene predicted gene, 37388
Pcdhga1 18 37661945 to 37841870 179925 + protein coding gene protocadherin gamma subfamily A, 1
Pcdhga2 18 37669105 to 37841870 172765 + protein coding gene protocadherin gamma subfamily A, 2
Pcdhga3 18 37674335 to 37841873 167538 + protein coding gene protocadherin gamma subfamily A, 3
Pcdhgb1 18 37680458 to 37841870 161412 + protein coding gene protocadherin gamma subfamily B, 1
Pcdhga4 18 37685400 to 37841870 156470 + protein coding gene protocadherin gamma subfamily A, 4
Pcdhgb2 18 37689859 to 37841872 152013 + protein coding gene protocadherin gamma subfamily B, 2
Pcdhga5 18 37694501 to 37841870 147369 + protein coding gene protocadherin gamma subfamily A, 5
Pcdhga6 18 37707229 to 37841870 134641 + protein coding gene protocadherin gamma subfamily A, 6
Pcdhga7 18 37714834 to 37841873 127039 + protein coding gene protocadherin gamma subfamily A, 7
Pcdhgb4 18 37720554 to 37841870 121316 + protein coding gene protocadherin gamma subfamily B, 4
Pcdhga8 18 37725706 to 37841873 116167 + protein coding gene protocadherin gamma subfamily A, 8
Pcdhgb5 18 37731154 to 37841870 110716 + protein coding gene protocadherin gamma subfamily B, 5
Pcdhga9 18 37736936 to 37841863 104927 + protein coding gene protocadherin gamma subfamily A, 9
Pcdhgb6 18 37742094 to 37841873 99779 + protein coding gene protocadherin gamma subfamily B, 6
Pcdhga10 18 37747188 to 37841870 94682 + protein coding gene protocadherin gamma subfamily A, 10
Pcdhgb7 18 37751779 to 37841870 90091 + protein coding gene protocadherin gamma subfamily B, 7
Pcdhga11 18 37755773 to 37841873 86100 + protein coding gene protocadherin gamma subfamily A, 11
Pcdhgb8 18 37761801 to 37841870 80069 + polymorphic pseudogene protocadherin gamma subfamily B, 8
Pcdhga12 18 37765580 to 37841873 76293 + protein coding gene protocadherin gamma subfamily A, 12
Pcdhgc3 18 37806410 to 37841873 35463 + protein coding gene protocadherin gamma subfamily C, 3
Tssr150749 18 37813070 to 37813088 18 + TSS region transcription start site region 150749
Tssr150750 18 37813174 to 37813234 60 + TSS region transcription start site region 150750
Tssr150751 18 37813369 to 37813385 16 + TSS region transcription start site region 150751
Pcdhgc4 18 37815079 to 37841873 26794 + protein coding gene protocadherin gamma subfamily C, 4
Cpgi9953 18 37815153 to 37816311 1158 CpG island CpG island 9953
Tssr150752 18 37815390 to 37815437 47 + TSS region transcription start site region 150752
Tssr150753 18 37815444 to 37815467 23 + TSS region transcription start site region 150753
Tssr150754 18 37819503 to 37819518 15 + TSS region transcription start site region 150754
Tssr150755 18 37819543 to 37819570 27 + TSS region transcription start site region 150755
Pcdhgc5 18 37819546 to 37841873 22327 + protein coding gene protocadherin gamma subfamily C, 5
Tssr150756 18 37821519 to 37821526 7 + TSS region transcription start site region 150756
Tssr150757 18 37821531 to 37821539 8 + TSS region transcription start site region 150757
Cpgi9954 18 37821951 to 37822656 705 CpG island CpG island 9954
Gm38182 18 37823879 to 37840382 16503 + unclassified non-coding RNA gene predicted gene, 38182
Tssr150758 18 37824071 to 37824080 9 + TSS region transcription start site region 150758
Tssr150759 18 37824090 to 37824103 13 + TSS region transcription start site region 150759
Tssr150760 18 37824581 to 37824634 53 + TSS region transcription start site region 150760
Tssr150761 18 37824946 to 37824972 26 + TSS region transcription start site region 150761
Tssr150762 18 37825003 to 37825056 53 + TSS region transcription start site region 150762
Tssr150763 18 37826700 to 37826707 7 + TSS region transcription start site region 150763
Tssr150764 18 37826717 to 37826734 17 + TSS region transcription start site region 150764
Gm29994 18 37829008 to 37830200 1192 - antisense lncRNA gene predicted gene, 29994
Tssr152991 18 37830090 to 37830102 12 - TSS region transcription start site region 152991
Tssr150765 18 37830601 to 37830605 4 + TSS region transcription start site region 150765
Cpgi9955 18 37839889 to 37840070 181 CpG island CpG island 9955
Cpgi9956 18 37841578 to 37841796 218 CpG island CpG island 9956
Diaph1 18 37843601 to 37935476 91875 - protein coding gene diaphanous related formin 1
Mir6979 18 37854605 to 37854660 55 - miRNA gene microRNA 6979
Tssr152992 18 37864511 to 37864517 6 - TSS region transcription start site region 152992
Tssr5290 18 37873254 to 37873255 1 + TSS region transcription start site region 5290
Tssr152993 18 37874347 to 37874380 33 - TSS region transcription start site region 152993
Tssr150766 18 37874547 to 37874550 3 + TSS region transcription start site region 150766
Tssr152994 18 37877760 to 37877772 12 - TSS region transcription start site region 152994
Tssr152995 18 37887954 to 37887956 2 - TSS region transcription start site region 152995
Tssr150767 18 37890899 to 37890923 24 + TSS region transcription start site region 150767
Tssr152996 18 37890983 to 37891000 17 - TSS region transcription start site region 152996
Tssr152997 18 37893373 to 37893411 38 - TSS region transcription start site region 152997
Tssr152998 18 37894201 to 37894214 13 - TSS region transcription start site region 152998
Tssr152999 18 37896141 to 37896155 14 - TSS region transcription start site region 152999
Tssr153000 18 37923382 to 37923386 4 - TSS region transcription start site region 153000
Cpgi9957 18 37934829 to 37935789 960 CpG island CpG island 9957
Tssr153001 18 37935378 to 37935393 15 - TSS region transcription start site region 153001
Tssr153002 18 37935403 to 37935428 25 - TSS region transcription start site region 153002
Tssr153003 18 37935429 to 37935450 21 - TSS region transcription start site region 153003
Hdac3 18 37936971 to 37954988 18017 - protein coding gene histone deacetylase 3
Tssr153004 18 37945048 to 37945064 16 - TSS region transcription start site region 153004
Cpgi9958 18 37954787 to 37956373 1586 CpG island CpG island 9958
Tssr153005 18 37954936 to 37954952 16 - TSS region transcription start site region 153005
Tssr153006 18 37954958 to 37955002 44 - TSS region transcription start site region 153006
Tssr153007 18 37955009 to 37955025 16 - TSS region transcription start site region 153007
Tssr150768 18 37955065 to 37955122 57 + TSS region transcription start site region 150768
Rell2 18 37955084 to 37959179 4095 + protein coding gene RELT-like 2
Tssr150769 18 37955126 to 37955135 9 + TSS region transcription start site region 150769
Tssr150770 18 37955528 to 37955537 9 + TSS region transcription start site region 150770
Tssr150771 18 37955544 to 37955623 79 + TSS region transcription start site region 150771
Tssr150772 18 37955635 to 37955645 10 + TSS region transcription start site region 150772
Tssr150773 18 37955648 to 37955672 24 + TSS region transcription start site region 150773
Tssr150774 18 37955685 to 37955694 9 + TSS region transcription start site region 150774
Fchsd1 18 37957431 to 37969774 12343 - protein coding gene FCH and double SH3 domains 1
Cpgi9959 18 37969404 to 37970198 794 CpG island CpG island 9959
Tssr153008 18 37969742 to 37969782 40 - TSS region transcription start site region 153008
Tssr153009 18 37969970 to 37969981 11 - TSS region transcription start site region 153009
Arap3 18 37972624 to 37997574 24950 - protein coding gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
Mir6981 18 37974503 to 37974617 114 - miRNA gene microRNA 6981
Cpgi9960 18 37985265 to 37985477 212 CpG island CpG island 9960
Tssr153010 18 37987170 to 37987174 4 - TSS region transcription start site region 153010
Mir6980 18 37990887 to 37990945 58 - miRNA gene microRNA 6980
Tssr153011 18 37997528 to 37997540 12 - TSS region transcription start site region 153011
Tssr153012 18 37997543 to 37997569 26 - TSS region transcription start site region 153012
Tssr150775 18 37997673 to 37997706 33 + TSS region transcription start site region 150775
Cpgi9961 18 37998453 to 37998839 386 CpG island CpG island 9961
Tssr153013 18 37998714 to 37998771 57 - TSS region transcription start site region 153013
Tssr153014 18 37999517 to 37999540 23 - TSS region transcription start site region 153014
Gm30093 18 38025003 to 38104400 79397 + lncRNA gene predicted gene, 30093
Cpgi9962 18 38025110 to 38025779 669 CpG island CpG island 9962
Gm41701 18 38049789 to 38061485 11696 - lncRNA gene predicted gene, 41701
Hctq8 18 38084527 to 38084674 147 QTL hematocrit QTL 8
D18Mit94 18 38084527 to 38084674 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 94
Cpgi9963 18 38096292 to 38096540 248 CpG island CpG island 9963
Gm30188 18 38105757 to 38145025 39268 - lncRNA gene predicted gene, 30188
Cpgi9964 18 38144961 to 38145341 380 CpG island CpG island 9964
Gm30142 18 38146242 to 38147998 1756 + lncRNA gene predicted gene, 30142
Tssr153015 18 38150799 to 38150810 11 - TSS region transcription start site region 153015
Gm30259 18 38162664 to 38168039 5375 - lncRNA gene predicted gene, 30259
Gm38566 18 38168484 to 38173421 4937 - lncRNA gene predicted gene, 38566
Cpgi9965 18 38185132 to 38185549 417 CpG island CpG island 9965
Cpgi9966 18 38185608 to 38186244 636 CpG island CpG island 9966
Cpgi9967 18 38189429 to 38189930 501 CpG island CpG island 9967
Pcdh1 18 38189454 to 38212048 22594 - protein coding gene protocadherin 1
Tssr150776 18 38190793 to 38190804 11 + TSS region transcription start site region 150776
Tssr153016 18 38192121 to 38192128 7 - TSS region transcription start site region 153016
Cpgi9968 18 38197802 to 38198103 301 CpG island CpG island 9968
Tssr153017 18 38203784 to 38203795 11 - TSS region transcription start site region 153017
Tssr153018 18 38203798 to 38203828 30 - TSS region transcription start site region 153018
Tssr153019 18 38203833 to 38203836 3 - TSS region transcription start site region 153019
Tssr153020 18 38203842 to 38203851 9 - TSS region transcription start site region 153020
Cpgi9969 18 38209604 to 38213013 3409 CpG island CpG island 9969
Tssr153021 18 38209642 to 38209670 28 - TSS region transcription start site region 153021
Tssr153022 18 38209676 to 38209728 52 - TSS region transcription start site region 153022
Tssr153023 18 38209733 to 38209747 14 - TSS region transcription start site region 153023
Tssr153024 18 38209767 to 38209786 19 - TSS region transcription start site region 153024
Tssr153025 18 38211957 to 38211995 38 - TSS region transcription start site region 153025
2010320O07Rik 18 38212112 to 38229163 17051 + lncRNA gene RIKEN cDNA 2010320O07 gene
Tssr150777 18 38228548 to 38228561 13 + TSS region transcription start site region 150777
1700086O06Rik 18 38238405 to 38250565 12160 - lincRNA gene RIKEN cDNA 1700086O06 gene
Cpgi9970 18 38239125 to 38239975 850 CpG island CpG island 9970
Tssr150778 18 38244789 to 38244798 9 + TSS region transcription start site region 150778
Gm10268 18 38244828 to 38245382 554 + pseudogene predicted gene 10268
Cpgi9971 18 38249945 to 38250617 672 CpG island CpG island 9971
Tssr153026 18 38250127 to 38250140 13 - TSS region transcription start site region 153026
Tssr153027 18 38250157 to 38250212 55 - TSS region transcription start site region 153027
Tssr150779 18 38250240 to 38250287 47 + TSS region transcription start site region 150779
Dele1 18 38250249 to 38262629 12380 + protein coding gene DAP3 binding cell death enhancer 1
Tssr150780 18 38250294 to 38250305 11 + TSS region transcription start site region 150780
Tssr150781 18 38250306 to 38250317 11 + TSS region transcription start site region 150781
Tssr153028 18 38250479 to 38250514 35 - TSS region transcription start site region 153028
Tssr153029 18 38250558 to 38250607 49 - TSS region transcription start site region 153029
Tssr150782 18 38251080 to 38251092 12 + TSS region transcription start site region 150782
Tssr150783 18 38262006 to 38262033 27 + TSS region transcription start site region 150783
Pcdh12 18 38267092 to 38284401 17309 - protein coding gene protocadherin 12
Cpgi9972 18 38268906 to 38269128 222 CpG island CpG island 9972
Tssr153030 18 38284322 to 38284328 6 - TSS region transcription start site region 153030
Tssr153031 18 38284339 to 38284346 7 - TSS region transcription start site region 153031
Tssr153032 18 38284391 to 38284408 17 - TSS region transcription start site region 153032
Cpgi9973 18 38296417 to 38297491 1074 CpG island CpG island 9973
Rnf14 18 38296635 to 38317847 21212 + protein coding gene ring finger protein 14
Tssr150784 18 38296640 to 38296719 79 + TSS region transcription start site region 150784
Tssr150785 18 38296724 to 38296734 10 + TSS region transcription start site region 150785
Tssr150786 18 38296739 to 38296750 11 + TSS region transcription start site region 150786
Tssr150787 18 38296808 to 38296819 11 + TSS region transcription start site region 150787
Tssr150788 18 38296826 to 38296837 11 + TSS region transcription start site region 150788
Tssr150789 18 38296961 to 38296987 26 + TSS region transcription start site region 150789
Tssr153033 18 38297040 to 38297055 15 - TSS region transcription start site region 153033
Tssr150790 18 38297210 to 38297231 21 + TSS region transcription start site region 150790
Tssr150791 18 38297247 to 38297266 19 + TSS region transcription start site region 150791
Tssr150792 18 38297486 to 38297507 21 + TSS region transcription start site region 150792
Gm23205 18 38297939 to 38298041 102 + snRNA gene predicted gene, 23205
1700074L02Rik 18 38299072 to 38299470 398 unclassified gene RIKEN cDNA 1700074L02 gene
Gnpda1 18 38327558 to 38339003 11445 - protein coding gene glucosamine-6-phosphate deaminase 1
Gm41702 18 38338229 to 38339710 1481 + lncRNA gene predicted gene, 41702
Cpgi9974 18 38338312 to 38339216 904 CpG island CpG island 9974
Tssr153034 18 38338934 to 38338985 51 - TSS region transcription start site region 153034
Tssr153035 18 38338991 to 38338994 3 - TSS region transcription start site region 153035
Tssr153036 18 38338997 to 38339007 10 - TSS region transcription start site region 153036
Tssr150793 18 38339071 to 38339101 30 + TSS region transcription start site region 150793
Tssr153037 18 38349939 to 38349946 7 - TSS region transcription start site region 153037
Tssr153038 18 38350100 to 38350133 33 - TSS region transcription start site region 153038
Gm24690 18 38356578 to 38356674 96 + rRNA gene predicted gene, 24690
Gm4949 18 38359444 to 38360538 1094 - pseudogene predicted gene 4949
Gm41703 18 38361361 to 38367990 6629 - lncRNA gene predicted gene, 41703
Cpgi9975 18 38367326 to 38367521 195 CpG island CpG island 9975
Tssr153039 18 38375547 to 38375557 10 - TSS region transcription start site region 153039
Tssr150794 18 38379339 to 38379350 11 + TSS region transcription start site region 150794
Tssr153040 18 38381173 to 38381176 3 - TSS region transcription start site region 153040
Tssr153041 18 38381181 to 38381191 10 - TSS region transcription start site region 153041
Tssr150795 18 38406457 to 38406467 10 + TSS region transcription start site region 150795
Cpgi9976 18 38418585 to 38419687 1102 CpG island CpG island 9976
Tssr150796 18 38418909 to 38418916 7 + TSS region transcription start site region 150796
Tssr150797 18 38418927 to 38418938 11 + TSS region transcription start site region 150797
Tssr150798 18 38418946 to 38418985 39 + TSS region transcription start site region 150798
Ndfip1 18 38418975 to 38464399 45424 + protein coding gene Nedd4 family interacting protein 1
Tssr150799 18 38419066 to 38419093 27 + TSS region transcription start site region 150799
Tssr153042 18 38419354 to 38419365 11 - TSS region transcription start site region 153042
Tssr150800 18 38419490 to 38419495 5 + TSS region transcription start site region 150800
Tssr150801 18 38428761 to 38428762 1 + TSS region transcription start site region 150801
Tssr150802 18 38457768 to 38457772 4 + TSS region transcription start site region 150802
D18Mit71 18 38459363 to 38459474 111 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 71
Tssr5291 18 38464593 to 38464607 14 + TSS region transcription start site region 5291
Gm41704 18 38482099 to 38488778 6679 + lncRNA gene predicted gene, 41704
Cpgi9977 18 38483368 to 38483822 454 CpG island CpG island 9977
D18Mit135 18 38524548 to 38524677 129 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 135
Tssr150803 18 38542878 to 38542906 28 + TSS region transcription start site region 150803
Cpgi9978 18 38574315 to 38574503 188 CpG island CpG island 9978
Gm19100 18 38582858 to 38583455 597 + pseudogene predicted gene, 19100
Tssr153043 18 38585007 to 38585008 1 - TSS region transcription start site region 153043