Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:37657378-37808408

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
3222401L13Rik 18 37655726 to 37659870 4144 + lincRNA gene RIKEN cDNA 3222401L13 gene
Tssr150714 18 37661771 to 37661776 5 + TSS region transcription start site region 150714
Pcdhga1 18 37661945 to 37841870 179925 + protein coding gene protocadherin gamma subfamily A, 1
Gm37118 18 37661952 to 37662632 680 - antisense lncRNA gene predicted gene, 37118
Cpgi9927 18 37662101 to 37662299 198 CpG island CpG island 9927
Tssr150715 18 37668918 to 37668962 44 + TSS region transcription start site region 150715
Cpgi9928 18 37668985 to 37669861 876 CpG island CpG island 9928
Pcdhga2 18 37669105 to 37841870 172765 + protein coding gene protocadherin gamma subfamily A, 2
Tssr150716 18 37674303 to 37674365 62 + TSS region transcription start site region 150716
Pcdhga3 18 37674335 to 37841873 167538 + protein coding gene protocadherin gamma subfamily A, 3
Cpgi9929 18 37674445 to 37674688 243 CpG island CpG island 9929
Tssr150717 18 37680254 to 37680307 53 + TSS region transcription start site region 150717
Pcdhgb1 18 37680458 to 37841870 161412 + protein coding gene protocadherin gamma subfamily B, 1
Cpgi9930 18 37681708 to 37682079 371 CpG island CpG island 9930
Tssr150718 18 37685229 to 37685289 60 + TSS region transcription start site region 150718
Pcdhga4 18 37685400 to 37841870 156470 + protein coding gene protocadherin gamma subfamily A, 4
Cpgi9931 18 37685467 to 37686122 655 CpG island CpG island 9931
Tssr150719 18 37689812 to 37689875 63 + TSS region transcription start site region 150719
Pcdhgb2 18 37689859 to 37841872 152013 + protein coding gene protocadherin gamma subfamily B, 2
Cpgi9932 18 37689917 to 37690081 164 CpG island CpG island 9932
Cpgi9933 18 37691371 to 37691623 252 CpG island CpG island 9933
Cpgi9934 18 37694342 to 37695355 1013 CpG island CpG island 9934
Tssr150720 18 37694360 to 37694388 28 + TSS region transcription start site region 150720
Tssr150721 18 37694407 to 37694423 16 + TSS region transcription start site region 150721
Pcdhga5 18 37694501 to 37841870 147369 + protein coding gene protocadherin gamma subfamily A, 5
Gm24401 18 37705979 to 37706069 90 + snoRNA gene predicted gene, 24401
Tssr150722 18 37707096 to 37707111 15 + TSS region transcription start site region 150722
Tssr150723 18 37707195 to 37707226 31 + TSS region transcription start site region 150723
Pcdhga6 18 37707229 to 37841870 134641 + protein coding gene protocadherin gamma subfamily A, 6
Gm37165 18 37714279 to 37726121 11842 - antisense lncRNA gene predicted gene, 37165
Tssr150724 18 37714712 to 37714729 17 + TSS region transcription start site region 150724
Tssr150725 18 37714739 to 37714820 81 + TSS region transcription start site region 150725
Pcdhga7 18 37714834 to 37841873 127039 + protein coding gene protocadherin gamma subfamily A, 7
Cpgi9935 18 37715108 to 37715284 176 CpG island CpG island 9935
Tssr150726 18 37720363 to 37720411 48 + TSS region transcription start site region 150726
Pcdhgb4 18 37720554 to 37841870 121316 + protein coding gene protocadherin gamma subfamily B, 4
Cpgi9936 18 37721855 to 37722742 887 CpG island CpG island 9936
Pcdhga8 18 37725706 to 37841873 116167 + protein coding gene protocadherin gamma subfamily A, 8
Tssr150727 18 37725721 to 37725754 33 + TSS region transcription start site region 150727
Cpgi9937 18 37725741 to 37726240 499 CpG island CpG island 9937
Cpgi9938 18 37726481 to 37726715 234 CpG island CpG island 9938
Tssr150728 18 37730965 to 37730989 24 + TSS region transcription start site region 150728
Tssr150729 18 37730992 to 37731010 18 + TSS region transcription start site region 150729
Pcdhgb5 18 37731154 to 37841870 110716 + protein coding gene protocadherin gamma subfamily B, 5
Cpgi9939 18 37732378 to 37733408 1030 CpG island CpG island 9939
Tssr150730 18 37736897 to 37736958 61 + TSS region transcription start site region 150730
Pcdhga9 18 37736936 to 37841863 104927 + protein coding gene protocadherin gamma subfamily A, 9
Cpgi9940 18 37737740 to 37737928 188 CpG island CpG island 9940
Tssr150731 18 37742088 to 37742137 49 + TSS region transcription start site region 150731
Pcdhgb6 18 37742094 to 37841873 99779 + protein coding gene protocadherin gamma subfamily B, 6
Cpgi9941 18 37742127 to 37742377 250 CpG island CpG island 9941
Cpgi9942 18 37743497 to 37744414 917 CpG island CpG island 9942
Gm26672 18 37746559 to 37768242 21683 - unclassified non-coding RNA gene predicted gene, 26672
Tssr150732 18 37746971 to 37747023 52 + TSS region transcription start site region 150732
Cpgi9943 18 37747140 to 37748046 906 CpG island CpG island 9943
Pcdhga10 18 37747188 to 37841870 94682 + protein coding gene protocadherin gamma subfamily A, 10
Cpgi9944 18 37748768 to 37749503 735 CpG island CpG island 9944
Tssr150733 18 37751601 to 37751652 51 + TSS region transcription start site region 150733
Pcdhgb7 18 37751779 to 37841870 90091 + protein coding gene protocadherin gamma subfamily B, 7
Cpgi9945 18 37753117 to 37753945 828 CpG island CpG island 9945
Tssr150734 18 37755718 to 37755767 49 + TSS region transcription start site region 150734
Pcdhga11 18 37755773 to 37841873 86100 + protein coding gene protocadherin gamma subfamily A, 11
Cpgi9946 18 37755835 to 37756629 794 CpG island CpG island 9946
Cpgi9947 18 37757652 to 37758255 603 CpG island CpG island 9947
Pcdhgb8 18 37761801 to 37841870 80069 + polymorphic pseudogene protocadherin gamma subfamily B, 8
Cpgi9948 18 37763162 to 37763985 823 CpG island CpG island 9948
Pcdhga12 18 37765580 to 37841873 76293 + protein coding gene protocadherin gamma subfamily A, 12
Tssr150735 18 37765958 to 37766008 50 + TSS region transcription start site region 150735
Cpgi9949 18 37766079 to 37766283 204 CpG island CpG island 9949
Cpgi9950 18 37766303 to 37768435 2132 CpG island CpG island 9950
Tssr150736 18 37768338 to 37768379 41 + TSS region transcription start site region 150736
Tssr150737 18 37768380 to 37768394 14 + TSS region transcription start site region 150737
Tssr150738 18 37768410 to 37768421 11 + TSS region transcription start site region 150738
BC037039 18 37805718 to 37807922 2204 - antisense lncRNA gene cDNA sequence BC037039
Cpgi9951 18 37805941 to 37807626 1685 CpG island CpG island 9951
Tssr150739 18 37806389 to 37806453 64 + TSS region transcription start site region 150739
Pcdhgc3 18 37806410 to 37841873 35463 + protein coding gene protocadherin gamma subfamily C, 3
Tssr5287 18 37806469 to 37806472 3 + TSS region transcription start site region 5287
Tssr150740 18 37806491 to 37806496 5 + TSS region transcription start site region 150740
Tssr150741 18 37807010 to 37807023 13 + TSS region transcription start site region 150741
Tssr150742 18 37807038 to 37807091 53 + TSS region transcription start site region 150742
Tssr150743 18 37807840 to 37807861 21 + TSS region transcription start site region 150743
Cpgi9952 18 37807901 to 37808962 1061 CpG island CpG island 9952
Tssr5288 18 37807939 to 37807960 21 - TSS region transcription start site region 5288
Tssr150744 18 37808045 to 37808119 74 + TSS region transcription start site region 150744