Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:37482378-37822982

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdhb16 18 37477814 to 37483038 5224 + protein coding gene protocadherin beta 16
Tssr150709 18 37484955 to 37485028 73 + TSS region transcription start site region 150709
Pcdhb17 18 37485021 to 37488290 3269 + protein coding gene protocadherin beta 17
Cpgi9916 18 37486608 to 37487379 771 CpG island CpG island 9916
Pcdhb18 18 37489465 to 37494503 5038 + protein coding gene protocadherin beta 18
Cpgi9917 18 37491093 to 37491376 283 CpG island CpG island 9917
Pcdhb19 18 37496998 to 37501711 4713 + protein coding gene protocadherin beta 19
Cpgi9918 18 37498538 to 37498772 234 CpG island CpG island 9918
Cpgi9919 18 37499175 to 37499354 179 CpG island CpG island 9919
Pcdhb20 18 37504264 to 37507660 3396 + protein coding gene protocadherin beta 20
Tssr150710 18 37504266 to 37504296 30 + TSS region transcription start site region 150710
Cpgi9920 18 37505840 to 37506506 666 CpG island CpG island 9920
Pcdhb21 18 37513652 to 37516363 2711 + protein coding gene protocadherin beta 21
Cpgi9921 18 37515125 to 37516057 932 CpG island CpG island 9921
Tssr150711 18 37518341 to 37518359 18 + TSS region transcription start site region 150711
Pcdhb22 18 37518353 to 37521419 3066 + protein coding gene protocadherin beta 22
Cpgi9922 18 37519736 to 37520129 393 CpG island CpG island 9922
Cpgi9923 18 37521617 to 37522120 503 CpG island CpG island 9923
Tssr152982 18 37618738 to 37618774 36 - TSS region transcription start site region 152982
4930517L18Rik 18 37618906 to 37619766 860 + lincRNA gene RIKEN cDNA 4930517L18 gene
Slc25a2 18 37637378 to 37638723 1345 - protein coding gene solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2
Cpgi9924 18 37638493 to 37638781 288 CpG island CpG island 9924
Tssr152983 18 37638719 to 37638737 18 - TSS region transcription start site region 152983
Taf7 18 37640491 to 37644204 3713 - protein coding gene TATA-box binding protein associated factor 7
Tssr152984 18 37642179 to 37642182 3 - TSS region transcription start site region 152984
Cpgi9925 18 37643894 to 37644436 542 CpG island CpG island 9925
Tssr152985 18 37644062 to 37644073 11 - TSS region transcription start site region 152985
Tssr152986 18 37644121 to 37644136 15 - TSS region transcription start site region 152986
Tssr152987 18 37644137 to 37644178 41 - TSS region transcription start site region 152987
Tssr152988 18 37644185 to 37644209 24 - TSS region transcription start site region 152988
Tssr152989 18 37644215 to 37644226 11 - TSS region transcription start site region 152989
Tssr150712 18 37644316 to 37644345 29 + TSS region transcription start site region 150712
Gm8242 18 37652378 to 37652982 604 - pseudogene predicted gene 8242
Cpgi9926 18 37655512 to 37655981 469 CpG island CpG island 9926
3222401L13Rik 18 37655726 to 37659870 4144 + lincRNA gene RIKEN cDNA 3222401L13 gene
Tssr152990 18 37655838 to 37655858 20 - TSS region transcription start site region 152990
Tssr150713 18 37655891 to 37655915 24 + TSS region transcription start site region 150713
Tssr150714 18 37661771 to 37661776 5 + TSS region transcription start site region 150714
Pcdhga1 18 37661945 to 37841870 179925 + protein coding gene protocadherin gamma subfamily A, 1
Gm37118 18 37661952 to 37662632 680 - antisense lncRNA gene predicted gene, 37118
Cpgi9927 18 37662101 to 37662299 198 CpG island CpG island 9927
Tssr150715 18 37668918 to 37668962 44 + TSS region transcription start site region 150715
Cpgi9928 18 37668985 to 37669861 876 CpG island CpG island 9928
Pcdhga2 18 37669105 to 37841870 172765 + protein coding gene protocadherin gamma subfamily A, 2
Tssr150716 18 37674303 to 37674365 62 + TSS region transcription start site region 150716
Pcdhga3 18 37674335 to 37841873 167538 + protein coding gene protocadherin gamma subfamily A, 3
Cpgi9929 18 37674445 to 37674688 243 CpG island CpG island 9929
Tssr150717 18 37680254 to 37680307 53 + TSS region transcription start site region 150717
Pcdhgb1 18 37680458 to 37841870 161412 + protein coding gene protocadherin gamma subfamily B, 1
Cpgi9930 18 37681708 to 37682079 371 CpG island CpG island 9930
Tssr150718 18 37685229 to 37685289 60 + TSS region transcription start site region 150718
Pcdhga4 18 37685400 to 37841870 156470 + protein coding gene protocadherin gamma subfamily A, 4
Cpgi9931 18 37685467 to 37686122 655 CpG island CpG island 9931
Tssr150719 18 37689812 to 37689875 63 + TSS region transcription start site region 150719
Pcdhgb2 18 37689859 to 37841872 152013 + protein coding gene protocadherin gamma subfamily B, 2
Cpgi9932 18 37689917 to 37690081 164 CpG island CpG island 9932
Cpgi9933 18 37691371 to 37691623 252 CpG island CpG island 9933
Cpgi9934 18 37694342 to 37695355 1013 CpG island CpG island 9934
Tssr150720 18 37694360 to 37694388 28 + TSS region transcription start site region 150720
Tssr150721 18 37694407 to 37694423 16 + TSS region transcription start site region 150721
Pcdhga5 18 37694501 to 37841870 147369 + protein coding gene protocadherin gamma subfamily A, 5
Gm24401 18 37705979 to 37706069 90 + snoRNA gene predicted gene, 24401
Tssr150722 18 37707096 to 37707111 15 + TSS region transcription start site region 150722
Tssr150723 18 37707195 to 37707226 31 + TSS region transcription start site region 150723
Pcdhga6 18 37707229 to 37841870 134641 + protein coding gene protocadherin gamma subfamily A, 6
Gm37165 18 37714279 to 37726121 11842 - antisense lncRNA gene predicted gene, 37165
Tssr150724 18 37714712 to 37714729 17 + TSS region transcription start site region 150724
Tssr150725 18 37714739 to 37714820 81 + TSS region transcription start site region 150725
Pcdhga7 18 37714834 to 37841873 127039 + protein coding gene protocadherin gamma subfamily A, 7
Cpgi9935 18 37715108 to 37715284 176 CpG island CpG island 9935
Tssr150726 18 37720363 to 37720411 48 + TSS region transcription start site region 150726
Pcdhgb4 18 37720554 to 37841870 121316 + protein coding gene protocadherin gamma subfamily B, 4
Cpgi9936 18 37721855 to 37722742 887 CpG island CpG island 9936
Pcdhga8 18 37725706 to 37841873 116167 + protein coding gene protocadherin gamma subfamily A, 8
Tssr150727 18 37725721 to 37725754 33 + TSS region transcription start site region 150727
Cpgi9937 18 37725741 to 37726240 499 CpG island CpG island 9937
Cpgi9938 18 37726481 to 37726715 234 CpG island CpG island 9938
Tssr150728 18 37730965 to 37730989 24 + TSS region transcription start site region 150728
Tssr150729 18 37730992 to 37731010 18 + TSS region transcription start site region 150729
Pcdhgb5 18 37731154 to 37841870 110716 + protein coding gene protocadherin gamma subfamily B, 5
Cpgi9939 18 37732378 to 37733408 1030 CpG island CpG island 9939
Tssr150730 18 37736897 to 37736958 61 + TSS region transcription start site region 150730
Pcdhga9 18 37736936 to 37841863 104927 + protein coding gene protocadherin gamma subfamily A, 9
Cpgi9940 18 37737740 to 37737928 188 CpG island CpG island 9940
Tssr150731 18 37742088 to 37742137 49 + TSS region transcription start site region 150731
Pcdhgb6 18 37742094 to 37841873 99779 + protein coding gene protocadherin gamma subfamily B, 6
Cpgi9941 18 37742127 to 37742377 250 CpG island CpG island 9941
Cpgi9942 18 37743497 to 37744414 917 CpG island CpG island 9942
Gm26672 18 37746559 to 37768242 21683 - unclassified non-coding RNA gene predicted gene, 26672
Tssr150732 18 37746971 to 37747023 52 + TSS region transcription start site region 150732
Cpgi9943 18 37747140 to 37748046 906 CpG island CpG island 9943
Pcdhga10 18 37747188 to 37841870 94682 + protein coding gene protocadherin gamma subfamily A, 10
Cpgi9944 18 37748768 to 37749503 735 CpG island CpG island 9944
Tssr150733 18 37751601 to 37751652 51 + TSS region transcription start site region 150733
Pcdhgb7 18 37751779 to 37841870 90091 + protein coding gene protocadherin gamma subfamily B, 7
Cpgi9945 18 37753117 to 37753945 828 CpG island CpG island 9945
Tssr150734 18 37755718 to 37755767 49 + TSS region transcription start site region 150734
Pcdhga11 18 37755773 to 37841873 86100 + protein coding gene protocadherin gamma subfamily A, 11
Cpgi9946 18 37755835 to 37756629 794 CpG island CpG island 9946
Cpgi9947 18 37757652 to 37758255 603 CpG island CpG island 9947
Pcdhgb8 18 37761801 to 37841870 80069 + polymorphic pseudogene protocadherin gamma subfamily B, 8
Cpgi9948 18 37763162 to 37763985 823 CpG island CpG island 9948
Pcdhga12 18 37765580 to 37841873 76293 + protein coding gene protocadherin gamma subfamily A, 12
Tssr150735 18 37765958 to 37766008 50 + TSS region transcription start site region 150735
Cpgi9949 18 37766079 to 37766283 204 CpG island CpG island 9949
Cpgi9950 18 37766303 to 37768435 2132 CpG island CpG island 9950
Tssr150736 18 37768338 to 37768379 41 + TSS region transcription start site region 150736
Tssr150737 18 37768380 to 37768394 14 + TSS region transcription start site region 150737
Tssr150738 18 37768410 to 37768421 11 + TSS region transcription start site region 150738
BC037039 18 37805718 to 37807922 2204 - antisense lncRNA gene cDNA sequence BC037039
Cpgi9951 18 37805941 to 37807626 1685 CpG island CpG island 9951
Tssr150739 18 37806389 to 37806453 64 + TSS region transcription start site region 150739
Pcdhgc3 18 37806410 to 37841873 35463 + protein coding gene protocadherin gamma subfamily C, 3
Tssr5287 18 37806469 to 37806472 3 + TSS region transcription start site region 5287
Tssr150740 18 37806491 to 37806496 5 + TSS region transcription start site region 150740
Tssr150741 18 37807010 to 37807023 13 + TSS region transcription start site region 150741
Tssr150742 18 37807038 to 37807091 53 + TSS region transcription start site region 150742
Tssr150743 18 37807840 to 37807861 21 + TSS region transcription start site region 150743
Cpgi9952 18 37807901 to 37808962 1061 CpG island CpG island 9952
Tssr5288 18 37807939 to 37807960 21 - TSS region transcription start site region 5288
Tssr150744 18 37808045 to 37808119 74 + TSS region transcription start site region 150744
Tssr150745 18 37808690 to 37808704 14 + TSS region transcription start site region 150745
Tssr150746 18 37808713 to 37808719 6 + TSS region transcription start site region 150746
Tssr5289 18 37808733 to 37808740 7 + TSS region transcription start site region 5289
Tssr150747 18 37812660 to 37812687 27 + TSS region transcription start site region 150747
Tssr150748 18 37812870 to 37812897 27 + TSS region transcription start site region 150748
Tssr150749 18 37813070 to 37813088 18 + TSS region transcription start site region 150749
Tssr150750 18 37813174 to 37813234 60 + TSS region transcription start site region 150750
Tssr150751 18 37813369 to 37813385 16 + TSS region transcription start site region 150751
Pcdhgc4 18 37815079 to 37841873 26794 + protein coding gene protocadherin gamma subfamily C, 4
Cpgi9953 18 37815153 to 37816311 1158 CpG island CpG island 9953
Tssr150752 18 37815390 to 37815437 47 + TSS region transcription start site region 150752
Tssr150753 18 37815444 to 37815467 23 + TSS region transcription start site region 150753
Tssr150754 18 37819503 to 37819518 15 + TSS region transcription start site region 150754
Tssr150755 18 37819543 to 37819570 27 + TSS region transcription start site region 150755
Pcdhgc5 18 37819546 to 37841873 22327 + protein coding gene protocadherin gamma subfamily C, 5
Tssr150756 18 37821519 to 37821526 7 + TSS region transcription start site region 150756
Tssr150757 18 37821531 to 37821539 8 + TSS region transcription start site region 150757
Cpgi9954 18 37821951 to 37822656 705 CpG island CpG island 9954