Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:36941455-37652020

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdha1 18 36930285 to 37187657 257372 + protein coding gene protocadherin alpha 1
Pcdha2 18 36939205 to 37187657 248452 + protein coding gene protocadherin alpha 2
Cpgi9881 18 36940384 to 36941513 1129 CpG island CpG island 9881
Tssr150685 18 36946081 to 36946096 15 + TSS region transcription start site region 150685
Pcdha3 18 36946207 to 37187657 241450 + protein coding gene protocadherin alpha 3
Cpgi9882 18 36947425 to 36947608 183 CpG island CpG island 9882
Cpgi9883 18 36947867 to 36948499 632 CpG island CpG island 9883
Tssr150686 18 36952621 to 36952660 39 + TSS region transcription start site region 150686
Gm38225 18 36952651 to 36953043 392 - antisense lncRNA gene predicted gene, 38225
Pcdha4 18 36952689 to 37187657 234968 + protein coding gene protocadherin alpha 4
Gm42416 18 36952741 to 37840200 887459 + protein coding gene predicted gene, 42416
Cpgi9884 18 36953843 to 36955022 1179 CpG island CpG island 9884
Tssr150687 18 36960269 to 36960298 29 + TSS region transcription start site region 150687
Pcdha5 18 36960440 to 37187657 227217 + protein coding gene protocadherin alpha 5
Cpgi9885 18 36961474 to 36962671 1197 CpG island CpG island 9885
Gm37753 18 36967591 to 36968148 557 - antisense lncRNA gene predicted gene, 37753
Tssr150688 18 36967619 to 36967650 31 + TSS region transcription start site region 150688
Gm38666 18 36967631 to 37841873 874242 + protein coding gene predicted gene, 38666
Pcdha6 18 36967756 to 37187657 219901 + protein coding gene protocadherin alpha 6
Cpgi9886 18 36968829 to 36969831 1002 CpG island CpG island 9886
Gm37013 18 36969916 to 37833296 863380 + protein coding gene predicted gene, 37013
Tssr150689 18 36973799 to 36973816 17 + TSS region transcription start site region 150689
Gm38667 18 36973802 to 37841873 868071 + protein coding gene predicted gene, 38667
Pcdha7 18 36973924 to 37187657 213733 + protein coding gene protocadherin alpha 7
Cpgi9887 18 36974977 to 36976271 1294 CpG island CpG island 9887
Gm37388 18 36975941 to 37833296 857355 + protein coding gene predicted gene, 37388
Gm36858 18 36980057 to 36989575 9518 + pseudogene predicted gene, 36858
Pcdha8 18 36992467 to 37187657 195190 + protein coding gene protocadherin alpha 8
Cpgi9888 18 36992608 to 36992892 284 CpG island CpG island 9888
Cpgi9889 18 36993709 to 36994795 1086 CpG island CpG island 9889
Tssr5284 18 36997807 to 36997825 18 + TSS region transcription start site region 5284
Pcdha9 18 36997880 to 37187657 189777 + protein coding gene protocadherin alpha 9
Cpgi9890 18 36998059 to 36998276 217 CpG island CpG island 9890
Cpgi9891 18 36999314 to 37000150 836 CpG island CpG island 9891
Pcdha10 18 37005320 to 37187657 182337 + protein coding gene protocadherin alpha 10
Cpgi9892 18 37006541 to 37007272 731 CpG island CpG island 9892
Gm10545 18 37008868 to 37020679 11811 - antisense lncRNA gene predicted gene 10545
Tssr5285 18 37010705 to 37010720 15 + TSS region transcription start site region 5285
Pcdha11 18 37010858 to 37187657 176799 + protein coding gene protocadherin alpha 11
Cpgi9893 18 37012137 to 37013030 893 CpG island CpG island 9893
Gm18150 18 37014056 to 37014631 575 + pseudogene predicted gene, 18150
Tssr150690 18 37020097 to 37020138 41 + TSS region transcription start site region 150690
Pcdha12 18 37020230 to 37187657 167427 + protein coding gene protocadherin alpha 12
Cpgi9894 18 37020608 to 37020804 196 CpG island CpG island 9894
Cpgi9895 18 37021300 to 37021557 257 CpG island CpG island 9895
Cpgi9896 18 37021844 to 37022420 576 CpG island CpG island 9896
Gm19035 18 37081499 to 37082457 958 + pseudogene predicted gene, 19035
Cpgi9897 18 37089812 to 37090817 1005 CpG island CpG island 9897
Pcdhac1 18 37090136 to 37187657 97521 + protein coding gene protocadherin alpha subfamily C, 1
C130024J02Rik 18 37121095 to 37124112 3017 unclassified gene RIKEN cDNA C130024J02 gene
Cpgi9898 18 37143285 to 37144828 1543 CpG island CpG island 9898
Tssr150691 18 37143664 to 37143696 32 + TSS region transcription start site region 150691
Tssr150692 18 37143714 to 37143729 15 + TSS region transcription start site region 150692
Pcdhac2 18 37143969 to 37187657 43688 + protein coding gene protocadherin alpha subfamily C, 2
Gm10544 18 37159854 to 37178522 18668 - unclassified non-coding RNA gene predicted gene 10544
Gm38097 18 37172126 to 37172564 438 - antisense lncRNA gene predicted gene, 38097
Tssr152980 18 37178493 to 37178531 38 - TSS region transcription start site region 152980
Tssr152981 18 37178700 to 37178716 16 - TSS region transcription start site region 152981
Tssr150693 18 37186695 to 37186696 1 + TSS region transcription start site region 150693
Cpgi9899 18 37218217 to 37218462 245 CpG island CpG island 9899
Cpgi9900 18 37264970 to 37265367 397 CpG island CpG island 9900
Pcdhb1 18 37264998 to 37267454 2456 + protein coding gene protocadherin beta 1
Pcdhb2 18 37294840 to 37297614 2774 + protein coding gene protocadherin beta 2
Cpgi9901 18 37296455 to 37297020 565 CpG island CpG island 9901
Pcdhb3 18 37300799 to 37304585 3786 + protein coding gene protocadherin beta 3
Tssr150694 18 37300810 to 37300835 25 + TSS region transcription start site region 150694
Cpgi9902 18 37302187 to 37303072 885 CpG island CpG island 9902
Gm18529 18 37305535 to 37306532 997 + pseudogene predicted gene, 18529
Tssr150695 18 37307445 to 37307462 17 + TSS region transcription start site region 150695
Pcdhb4 18 37307455 to 37311172 3717 + protein coding gene protocadherin beta 4
Cpgi9903 18 37308982 to 37309724 742 CpG island CpG island 9903
Tssr150696 18 37320374 to 37320401 27 + TSS region transcription start site region 150696
Pcdhb5 18 37320381 to 37323913 3532 + protein coding gene protocadherin beta 5
Cpgi9904 18 37322033 to 37322711 678 CpG island CpG island 9904
Tssr150697 18 37333853 to 37333863 10 + TSS region transcription start site region 150697
Pcdhb6 18 37334028 to 37336346 2318 + protein coding gene protocadherin beta 6
Pcdhb7 18 37341702 to 37345202 3500 + protein coding gene protocadherin beta 7
Tssr150698 18 37341715 to 37341728 13 + TSS region transcription start site region 150698
Tssr150699 18 37341744 to 37341756 12 + TSS region transcription start site region 150699
Cpgi9905 18 37343192 to 37343535 343 CpG island CpG island 9905
Cpgi9906 18 37343794 to 37343974 180 CpG island CpG island 9906
Pcdhb8 18 37355271 to 37357610 2339 + protein coding gene protocadherin beta 8
Cpgi9907 18 37356743 to 37356982 239 CpG island CpG island 9907
Tssr150700 18 37400845 to 37400886 41 + TSS region transcription start site region 150700
Pcdhb9 18 37400855 to 37403909 3054 + protein coding gene protocadherin beta 9
Cpgi9908 18 37402376 to 37403102 726 CpG island CpG island 9908
Tssr150701 18 37404053 to 37404058 5 + TSS region transcription start site region 150701
Pcdhb10 18 37411674 to 37414514 2840 + protein coding gene protocadherin beta 10
Tssr150702 18 37411693 to 37411732 39 + TSS region transcription start site region 150702
Cpgi9909 18 37413338 to 37413627 289 CpG island CpG island 9909
Pcdhb11 18 37421418 to 37425032 3614 + protein coding gene protocadherin beta 11
Tssr150703 18 37421428 to 37421455 27 + TSS region transcription start site region 150703
Cpgi9910 18 37423101 to 37423717 616 CpG island CpG island 9910
Gm37446 18 37433412 to 37437547 4135 - antisense lncRNA gene predicted gene, 37446
Gm20162 18 37434243 to 37435113 870 + pseudogene predicted gene, 20162
Tssr150704 18 37435602 to 37435636 34 + TSS region transcription start site region 150704
Pcdhb12 18 37435621 to 37438654 3033 + protein coding gene protocadherin beta 12
Cpgi9911 18 37437107 to 37437999 892 CpG island CpG island 9911
Pcdhb13 18 37442517 to 37446209 3692 + protein coding gene protocadherin beta 13
Cpgi9912 18 37444024 to 37444652 628 CpG island CpG island 9912
Tssr150705 18 37447641 to 37447674 33 + TSS region transcription start site region 150705
Pcdhb14 18 37447657 to 37451094 3437 + protein coding gene protocadherin beta 14
Cpgi9913 18 37449321 to 37449843 522 CpG island CpG island 9913
Tssr150706 18 37473514 to 37473532 18 + TSS region transcription start site region 150706
Tssr150707 18 37473538 to 37473562 24 + TSS region transcription start site region 150707
Pcdhb15 18 37473546 to 37476340 2794 + protein coding gene protocadherin beta 15
Cpgi9914 18 37475170 to 37475618 448 CpG island CpG island 9914
Tssr150708 18 37477805 to 37477835 30 + TSS region transcription start site region 150708
Pcdhb16 18 37477814 to 37483038 5224 + protein coding gene protocadherin beta 16
Tssr5286 18 37477846 to 37477856 10 + TSS region transcription start site region 5286
Cpgi9915 18 37479449 to 37479917 468 CpG island CpG island 9915
Tssr150709 18 37484955 to 37485028 73 + TSS region transcription start site region 150709
Pcdhb17 18 37485021 to 37488290 3269 + protein coding gene protocadherin beta 17
Cpgi9916 18 37486608 to 37487379 771 CpG island CpG island 9916
Pcdhb18 18 37489465 to 37494503 5038 + protein coding gene protocadherin beta 18
Cpgi9917 18 37491093 to 37491376 283 CpG island CpG island 9917
Pcdhb19 18 37496998 to 37501711 4713 + protein coding gene protocadherin beta 19
Cpgi9918 18 37498538 to 37498772 234 CpG island CpG island 9918
Cpgi9919 18 37499175 to 37499354 179 CpG island CpG island 9919
Pcdhb20 18 37504264 to 37507660 3396 + protein coding gene protocadherin beta 20
Tssr150710 18 37504266 to 37504296 30 + TSS region transcription start site region 150710
Cpgi9920 18 37505840 to 37506506 666 CpG island CpG island 9920
Pcdhb21 18 37513652 to 37516363 2711 + protein coding gene protocadherin beta 21
Cpgi9921 18 37515125 to 37516057 932 CpG island CpG island 9921
Tssr150711 18 37518341 to 37518359 18 + TSS region transcription start site region 150711
Pcdhb22 18 37518353 to 37521419 3066 + protein coding gene protocadherin beta 22
Cpgi9922 18 37519736 to 37520129 393 CpG island CpG island 9922
Cpgi9923 18 37521617 to 37522120 503 CpG island CpG island 9923
Tssr152982 18 37618738 to 37618774 36 - TSS region transcription start site region 152982
4930517L18Rik 18 37618906 to 37619766 860 + lincRNA gene RIKEN cDNA 4930517L18 gene
Slc25a2 18 37637378 to 37638723 1345 - protein coding gene solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2
Cpgi9924 18 37638493 to 37638781 288 CpG island CpG island 9924
Tssr152983 18 37638719 to 37638737 18 - TSS region transcription start site region 152983
Taf7 18 37640491 to 37644204 3713 - protein coding gene TATA-box binding protein associated factor 7
Tssr152984 18 37642179 to 37642182 3 - TSS region transcription start site region 152984
Cpgi9925 18 37643894 to 37644436 542 CpG island CpG island 9925
Tssr152985 18 37644062 to 37644073 11 - TSS region transcription start site region 152985
Tssr152986 18 37644121 to 37644136 15 - TSS region transcription start site region 152986
Tssr152987 18 37644137 to 37644178 41 - TSS region transcription start site region 152987
Tssr152988 18 37644185 to 37644209 24 - TSS region transcription start site region 152988
Tssr152989 18 37644215 to 37644226 11 - TSS region transcription start site region 152989
Tssr150712 18 37644316 to 37644345 29 + TSS region transcription start site region 150712