Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:36679548-40369677

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658 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9871 18 36678886 to 36679654 768 CpG island CpG island 9871
Slc35a4 18 36679215 to 36683861 4646 + protein coding gene solute carrier family 35, member A4
Tssr150651 18 36679575 to 36679592 17 + TSS region transcription start site region 150651
E230025N22Rik 18 36684923 to 36695925 11002 - protein coding gene Riken cDNA E230025N22 gene
Tssr152953 18 36700542 to 36700574 32 - TSS region transcription start site region 152953
Tssr150652 18 36702433 to 36702452 19 + TSS region transcription start site region 150652
Gm41699 18 36709020 to 36718962 9942 + lncRNA gene predicted gene, 41699
Tssr150653 18 36709206 to 36709224 18 + TSS region transcription start site region 150653
Tssr150654 18 36709229 to 36709240 11 + TSS region transcription start site region 150654
Tssr152954 18 36713359 to 36713363 4 - TSS region transcription start site region 152954
Tssr150655 18 36713669 to 36713718 49 + TSS region transcription start site region 150655
Tssr5283 18 36719953 to 36719960 7 - TSS region transcription start site region 5283
Tssr152955 18 36720021 to 36720026 5 - TSS region transcription start site region 152955
Tssr150656 18 36720216 to 36720239 23 + TSS region transcription start site region 150656
Cd14 18 36725074 to 36726736 1662 - protein coding gene CD14 antigen
Tssr152956 18 36725097 to 36725127 30 - TSS region transcription start site region 152956
Cpgi9872 18 36725481 to 36726454 973 CpG island CpG island 9872
Tssr150657 18 36725768 to 36725787 19 + TSS region transcription start site region 150657
Tssr150658 18 36725788 to 36725833 45 + TSS region transcription start site region 150658
Tssr150659 18 36725918 to 36725994 76 + TSS region transcription start site region 150659
Tssr152957 18 36726108 to 36726116 8 - TSS region transcription start site region 152957
Tssr152958 18 36726172 to 36726186 14 - TSS region transcription start site region 152958
Tssr152959 18 36726200 to 36726226 26 - TSS region transcription start site region 152959
Tssr152960 18 36726278 to 36726301 23 - TSS region transcription start site region 152960
Tssr150660 18 36726297 to 36726334 37 + TSS region transcription start site region 150660
Tssr152961 18 36726335 to 36726349 14 - TSS region transcription start site region 152961
Tssr152962 18 36726571 to 36726586 15 - TSS region transcription start site region 152962
Tssr152963 18 36726592 to 36726615 23 - TSS region transcription start site region 152963
Tssr152964 18 36726668 to 36726691 23 - TSS region transcription start site region 152964
Tssr152965 18 36726716 to 36726724 8 - TSS region transcription start site region 152965
Tssr152966 18 36726730 to 36726745 15 - TSS region transcription start site region 152966
Tssr152967 18 36726777 to 36726782 5 - TSS region transcription start site region 152967
Tssr150661 18 36727621 to 36727628 7 + TSS region transcription start site region 150661
Cpgi9873 18 36734817 to 36735541 724 CpG island CpG island 9873
Tssr152968 18 36734899 to 36734906 7 - TSS region transcription start site region 152968
Tssr150662 18 36735012 to 36735026 14 + TSS region transcription start site region 150662
Tssr150663 18 36735032 to 36735058 26 + TSS region transcription start site region 150663
Tmco6 18 36735068 to 36742391 7323 + protein coding gene transmembrane and coiled-coil domains 6
Tssr150664 18 36735117 to 36735177 60 + TSS region transcription start site region 150664
Ndufa2 18 36742332 to 36744557 2225 - protein coding gene NADH:ubiquinone oxidoreductase subunit A2
Cpgi9874 18 36744138 to 36745163 1025 CpG island CpG island 9874
Tssr152969 18 36744451 to 36744460 9 - TSS region transcription start site region 152969
Tssr152970 18 36744495 to 36744499 4 - TSS region transcription start site region 152970
Tssr152971 18 36744518 to 36744553 35 - TSS region transcription start site region 152971
Ik 18 36744656 to 36757639 12983 + protein coding gene IK cytokine
Tssr150665 18 36744673 to 36744737 64 + TSS region transcription start site region 150665
Tssr150666 18 36749240 to 36749259 19 + TSS region transcription start site region 150666
Tssr150667 18 36751100 to 36751113 13 + TSS region transcription start site region 150667
Tssr150668 18 36751162 to 36751182 20 + TSS region transcription start site region 150668
Tssr150669 18 36753433 to 36753455 22 + TSS region transcription start site region 150669
Cpgi9875 18 36759844 to 36760634 790 CpG island CpG island 9875
Tssr150670 18 36760214 to 36760292 78 + TSS region transcription start site region 150670
Wdr55 18 36760239 to 36763708 3469 + protein coding gene WD repeat domain 55
Dnd1 18 36763671 to 36766214 2543 - protein coding gene DND microRNA-mediated repression inhibitor 1
Cpgi9876 18 36765068 to 36765577 509 CpG island CpG island 9876
Tssr152972 18 36766192 to 36766205 13 - TSS region transcription start site region 152972
Tssr152973 18 36766218 to 36766237 19 - TSS region transcription start site region 152973
Hars 18 36766530 to 36783205 16675 - protein coding gene histidyl-tRNA synthetase
Tssr152974 18 36770184 to 36770196 12 - TSS region transcription start site region 152974
Tssr152975 18 36772322 to 36772346 24 - TSS region transcription start site region 152975
Tssr152976 18 36772371 to 36772385 14 - TSS region transcription start site region 152976
Cpgi9877 18 36782746 to 36783565 819 CpG island CpG island 9877
Tssr152977 18 36783096 to 36783108 12 - TSS region transcription start site region 152977
Tssr152978 18 36783113 to 36783141 28 - TSS region transcription start site region 152978
Tssr152979 18 36783146 to 36783191 45 - TSS region transcription start site region 152979
Hars2 18 36783209 to 36792562 9353 + protein coding gene histidyl-tRNA synthetase 2
Tssr150671 18 36783222 to 36783235 13 + TSS region transcription start site region 150671
Tssr150672 18 36783236 to 36783271 35 + TSS region transcription start site region 150672
Cpgi9878 18 36793734 to 36794319 585 CpG island CpG island 9878
Tssr150673 18 36793832 to 36793849 17 + TSS region transcription start site region 150673
Tssr150674 18 36793918 to 36793937 19 + TSS region transcription start site region 150674
Zmat2 18 36793923 to 36799660 5737 + protein coding gene zinc finger, matrin type 2
Tssr150675 18 36795102 to 36795128 26 + TSS region transcription start site region 150675
Tssr150676 18 36796029 to 36796042 13 + TSS region transcription start site region 150676
Tssr150677 18 36796060 to 36796073 13 + TSS region transcription start site region 150677
Tssr150678 18 36796520 to 36796536 16 + TSS region transcription start site region 150678
Tssr150679 18 36799301 to 36799306 5 + TSS region transcription start site region 150679
Cpgi9879 18 36801488 to 36802024 536 CpG island CpG island 9879
Tssr150680 18 36801826 to 36801842 16 + TSS region transcription start site region 150680
Tssr150681 18 36801856 to 36801882 26 + TSS region transcription start site region 150681
Vaultrc5 18 36801866 to 36802008 142 + lncRNA gene vault RNA component 5
Gm23424 18 36810891 to 36811000 109 + miRNA gene predicted gene, 23424
Gm6756 18 36920396 to 36922015 1619 + pseudogene predicted gene 6756
Pcdha1 18 36930285 to 37187657 257372 + protein coding gene protocadherin alpha 1
Cpgi9880 18 36931414 to 36932549 1135 CpG island CpG island 9880
Gm37751 18 36933952 to 36935149 1197 - antisense lncRNA gene predicted gene, 37751
Tssr150682 18 36936296 to 36936319 23 + TSS region transcription start site region 150682
Tssr150683 18 36939120 to 36939128 8 + TSS region transcription start site region 150683
Tssr150684 18 36939178 to 36939212 34 + TSS region transcription start site region 150684
Pcdha2 18 36939205 to 37187657 248452 + protein coding gene protocadherin alpha 2
Cpgi9881 18 36940384 to 36941513 1129 CpG island CpG island 9881
Tssr150685 18 36946081 to 36946096 15 + TSS region transcription start site region 150685
Pcdha3 18 36946207 to 37187657 241450 + protein coding gene protocadherin alpha 3
Cpgi9882 18 36947425 to 36947608 183 CpG island CpG island 9882
Cpgi9883 18 36947867 to 36948499 632 CpG island CpG island 9883
Tssr150686 18 36952621 to 36952660 39 + TSS region transcription start site region 150686
Gm38225 18 36952651 to 36953043 392 - antisense lncRNA gene predicted gene, 38225
Pcdha4 18 36952689 to 37187657 234968 + protein coding gene protocadherin alpha 4
Gm42416 18 36952741 to 37840200 887459 + protein coding gene predicted gene, 42416
Cpgi9884 18 36953843 to 36955022 1179 CpG island CpG island 9884
Tssr150687 18 36960269 to 36960298 29 + TSS region transcription start site region 150687
Pcdha5 18 36960440 to 37187657 227217 + protein coding gene protocadherin alpha 5
Cpgi9885 18 36961474 to 36962671 1197 CpG island CpG island 9885
Gm37753 18 36967591 to 36968148 557 - antisense lncRNA gene predicted gene, 37753
Tssr150688 18 36967619 to 36967650 31 + TSS region transcription start site region 150688
Gm38666 18 36967631 to 37841873 874242 + protein coding gene predicted gene, 38666
Pcdha6 18 36967756 to 37187657 219901 + protein coding gene protocadherin alpha 6
Cpgi9886 18 36968829 to 36969831 1002 CpG island CpG island 9886
Gm37013 18 36969916 to 37833296 863380 + protein coding gene predicted gene, 37013
Tssr150689 18 36973799 to 36973816 17 + TSS region transcription start site region 150689
Gm38667 18 36973802 to 37841873 868071 + protein coding gene predicted gene, 38667
Pcdha7 18 36973924 to 37187657 213733 + protein coding gene protocadherin alpha 7
Cpgi9887 18 36974977 to 36976271 1294 CpG island CpG island 9887
Gm37388 18 36975941 to 37833296 857355 + protein coding gene predicted gene, 37388
Gm36858 18 36980057 to 36989575 9518 + pseudogene predicted gene, 36858
Pcdha8 18 36992467 to 37187657 195190 + protein coding gene protocadherin alpha 8
Cpgi9888 18 36992608 to 36992892 284 CpG island CpG island 9888
Cpgi9889 18 36993709 to 36994795 1086 CpG island CpG island 9889
Tssr5284 18 36997807 to 36997825 18 + TSS region transcription start site region 5284
Pcdha9 18 36997880 to 37187657 189777 + protein coding gene protocadherin alpha 9
Cpgi9890 18 36998059 to 36998276 217 CpG island CpG island 9890
Cpgi9891 18 36999314 to 37000150 836 CpG island CpG island 9891
Pcdha10 18 37005320 to 37187657 182337 + protein coding gene protocadherin alpha 10
Cpgi9892 18 37006541 to 37007272 731 CpG island CpG island 9892
Gm10545 18 37008868 to 37020679 11811 - antisense lncRNA gene predicted gene 10545
Tssr5285 18 37010705 to 37010720 15 + TSS region transcription start site region 5285
Pcdha11 18 37010858 to 37187657 176799 + protein coding gene protocadherin alpha 11
Cpgi9893 18 37012137 to 37013030 893 CpG island CpG island 9893
Gm18150 18 37014056 to 37014631 575 + pseudogene predicted gene, 18150
Tssr150690 18 37020097 to 37020138 41 + TSS region transcription start site region 150690
Pcdha12 18 37020230 to 37187657 167427 + protein coding gene protocadherin alpha 12
Cpgi9894 18 37020608 to 37020804 196 CpG island CpG island 9894
Cpgi9895 18 37021300 to 37021557 257 CpG island CpG island 9895
Cpgi9896 18 37021844 to 37022420 576 CpG island CpG island 9896
Gm19035 18 37081499 to 37082457 958 + pseudogene predicted gene, 19035
Cpgi9897 18 37089812 to 37090817 1005 CpG island CpG island 9897
Pcdhac1 18 37090136 to 37187657 97521 + protein coding gene protocadherin alpha subfamily C, 1
C130024J02Rik 18 37121095 to 37124112 3017 unclassified gene RIKEN cDNA C130024J02 gene
Cpgi9898 18 37143285 to 37144828 1543 CpG island CpG island 9898
Tssr150691 18 37143664 to 37143696 32 + TSS region transcription start site region 150691
Tssr150692 18 37143714 to 37143729 15 + TSS region transcription start site region 150692
Pcdhac2 18 37143969 to 37187657 43688 + protein coding gene protocadherin alpha subfamily C, 2
Gm10544 18 37159854 to 37178522 18668 - unclassified non-coding RNA gene predicted gene 10544
Gm38097 18 37172126 to 37172564 438 - antisense lncRNA gene predicted gene, 38097
Tssr152980 18 37178493 to 37178531 38 - TSS region transcription start site region 152980
Tssr152981 18 37178700 to 37178716 16 - TSS region transcription start site region 152981
Tssr150693 18 37186695 to 37186696 1 + TSS region transcription start site region 150693
Cpgi9899 18 37218217 to 37218462 245 CpG island CpG island 9899
Cpgi9900 18 37264970 to 37265367 397 CpG island CpG island 9900
Pcdhb1 18 37264998 to 37267454 2456 + protein coding gene protocadherin beta 1
Pcdhb2 18 37294840 to 37297614 2774 + protein coding gene protocadherin beta 2
Cpgi9901 18 37296455 to 37297020 565 CpG island CpG island 9901
Pcdhb3 18 37300799 to 37304585 3786 + protein coding gene protocadherin beta 3
Tssr150694 18 37300810 to 37300835 25 + TSS region transcription start site region 150694
Cpgi9902 18 37302187 to 37303072 885 CpG island CpG island 9902
Gm18529 18 37305535 to 37306532 997 + pseudogene predicted gene, 18529
Tssr150695 18 37307445 to 37307462 17 + TSS region transcription start site region 150695
Pcdhb4 18 37307455 to 37311172 3717 + protein coding gene protocadherin beta 4
Cpgi9903 18 37308982 to 37309724 742 CpG island CpG island 9903
Tssr150696 18 37320374 to 37320401 27 + TSS region transcription start site region 150696
Pcdhb5 18 37320381 to 37323913 3532 + protein coding gene protocadherin beta 5
Cpgi9904 18 37322033 to 37322711 678 CpG island CpG island 9904
Tssr150697 18 37333853 to 37333863 10 + TSS region transcription start site region 150697
Pcdhb6 18 37334028 to 37336346 2318 + protein coding gene protocadherin beta 6
Pcdhb7 18 37341702 to 37345202 3500 + protein coding gene protocadherin beta 7
Tssr150698 18 37341715 to 37341728 13 + TSS region transcription start site region 150698
Tssr150699 18 37341744 to 37341756 12 + TSS region transcription start site region 150699
Cpgi9905 18 37343192 to 37343535 343 CpG island CpG island 9905
Cpgi9906 18 37343794 to 37343974 180 CpG island CpG island 9906
Pcdhb8 18 37355271 to 37357610 2339 + protein coding gene protocadherin beta 8
Cpgi9907 18 37356743 to 37356982 239 CpG island CpG island 9907
Tssr150700 18 37400845 to 37400886 41 + TSS region transcription start site region 150700
Pcdhb9 18 37400855 to 37403909 3054 + protein coding gene protocadherin beta 9
Cpgi9908 18 37402376 to 37403102 726 CpG island CpG island 9908
Tssr150701 18 37404053 to 37404058 5 + TSS region transcription start site region 150701
Pcdhb10 18 37411674 to 37414514 2840 + protein coding gene protocadherin beta 10
Tssr150702 18 37411693 to 37411732 39 + TSS region transcription start site region 150702
Cpgi9909 18 37413338 to 37413627 289 CpG island CpG island 9909
Pcdhb11 18 37421418 to 37425032 3614 + protein coding gene protocadherin beta 11
Tssr150703 18 37421428 to 37421455 27 + TSS region transcription start site region 150703
Cpgi9910 18 37423101 to 37423717 616 CpG island CpG island 9910
Gm37446 18 37433412 to 37437547 4135 - antisense lncRNA gene predicted gene, 37446
Gm20162 18 37434243 to 37435113 870 + pseudogene predicted gene, 20162
Tssr150704 18 37435602 to 37435636 34 + TSS region transcription start site region 150704
Pcdhb12 18 37435621 to 37438654 3033 + protein coding gene protocadherin beta 12
Cpgi9911 18 37437107 to 37437999 892 CpG island CpG island 9911
Pcdhb13 18 37442517 to 37446209 3692 + protein coding gene protocadherin beta 13
Cpgi9912 18 37444024 to 37444652 628 CpG island CpG island 9912
Tssr150705 18 37447641 to 37447674 33 + TSS region transcription start site region 150705
Pcdhb14 18 37447657 to 37451094 3437 + protein coding gene protocadherin beta 14
Cpgi9913 18 37449321 to 37449843 522 CpG island CpG island 9913
Tssr150706 18 37473514 to 37473532 18 + TSS region transcription start site region 150706
Tssr150707 18 37473538 to 37473562 24 + TSS region transcription start site region 150707
Pcdhb15 18 37473546 to 37476340 2794 + protein coding gene protocadherin beta 15
Cpgi9914 18 37475170 to 37475618 448 CpG island CpG island 9914
Tssr150708 18 37477805 to 37477835 30 + TSS region transcription start site region 150708
Pcdhb16 18 37477814 to 37483038 5224 + protein coding gene protocadherin beta 16
Tssr5286 18 37477846 to 37477856 10 + TSS region transcription start site region 5286
Cpgi9915 18 37479449 to 37479917 468 CpG island CpG island 9915
Tssr150709 18 37484955 to 37485028 73 + TSS region transcription start site region 150709