Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:36343784-40063795

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708 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr150618 18 36344576 to 36344589 13 + TSS region transcription start site region 150618
Cpgi9867 18 36348201 to 36349275 1074 CpG island CpG island 9867
Cystm1 18 36348624 to 36393370 44746 + protein coding gene cysteine-rich transmembrane module containing 1
Tssr150619 18 36348653 to 36348728 75 + TSS region transcription start site region 150619
Tssr150620 18 36348739 to 36348779 40 + TSS region transcription start site region 150620
Tssr150621 18 36348794 to 36348803 9 + TSS region transcription start site region 150621
Tssr150622 18 36348916 to 36348930 14 + TSS region transcription start site region 150622
Tssr150623 18 36348935 to 36348957 22 + TSS region transcription start site region 150623
Tssr150624 18 36365774 to 36365785 11 + TSS region transcription start site region 150624
Tssr150625 18 36365812 to 36365823 11 + TSS region transcription start site region 150625
Tssr150626 18 36366563 to 36366587 24 + TSS region transcription start site region 150626
Tssr150627 18 36390922 to 36390926 4 + TSS region transcription start site region 150627
Pfdn1 18 36403679 to 36454495 50816 - protein coding gene prefoldin 1
Tssr152932 18 36416593 to 36416598 5 - TSS region transcription start site region 152932
Tssr152933 18 36453830 to 36453835 5 - TSS region transcription start site region 152933
Tssr152934 18 36454487 to 36454516 29 - TSS region transcription start site region 152934
Tssr152935 18 36454523 to 36454535 12 - TSS region transcription start site region 152935
Hbegf 18 36504929 to 36515805 10876 - protein coding gene heparin-binding EGF-like growth factor
Cpgi9868 18 36515063 to 36516264 1201 CpG island CpG island 9868
Tssr152936 18 36515767 to 36515787 20 - TSS region transcription start site region 152936
Tssr152937 18 36515798 to 36515812 14 - TSS region transcription start site region 152937
Gm41698 18 36515946 to 36519145 3199 + lncRNA gene predicted gene, 41698
Tssr150628 18 36528145 to 36528154 9 + TSS region transcription start site region 150628
Slc4a9 18 36528157 to 36541293 13136 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter, member 9
Tssr150629 18 36529205 to 36529208 3 + TSS region transcription start site region 150629
Tssr150630 18 36529223 to 36529241 18 + TSS region transcription start site region 150630
Tssr150631 18 36529243 to 36529251 8 + TSS region transcription start site region 150631
Tssr150632 18 36531032 to 36531048 16 + TSS region transcription start site region 150632
Cpgi9869 18 36559371 to 36561576 2205 CpG island CpG island 9869
Tssr152938 18 36559831 to 36559851 20 - TSS region transcription start site region 152938
Tssr152939 18 36559887 to 36559912 25 - TSS region transcription start site region 152939
Tssr150633 18 36559972 to 36560003 31 + TSS region transcription start site region 150633
Tssr152940 18 36560153 to 36560178 25 - TSS region transcription start site region 152940
Tssr152941 18 36560205 to 36560230 25 - TSS region transcription start site region 152941
Tssr150634 18 36560581 to 36560620 39 + TSS region transcription start site region 150634
Ankhd1 18 36560603 to 36658908 98305 + protein coding gene ankyrin repeat and KH domain containing 1
Tssr150635 18 36560630 to 36560657 27 + TSS region transcription start site region 150635
Tssr150636 18 36560660 to 36560674 14 + TSS region transcription start site region 150636
Tssr150637 18 36563682 to 36563686 4 + TSS region transcription start site region 150637
Tssr150638 18 36571703 to 36571707 4 + TSS region transcription start site region 150638
Tssr150639 18 36573580 to 36573585 5 + TSS region transcription start site region 150639
Tssr150640 18 36597780 to 36597791 11 + TSS region transcription start site region 150640
Tssr152942 18 36606091 to 36606127 36 - TSS region transcription start site region 152942
Tssr150641 18 36606173 to 36606189 16 + TSS region transcription start site region 150641
Tssr5282 18 36606189 to 36606196 7 + TSS region transcription start site region 5282
Gm6542 18 36609958 to 36610729 771 + pseudogene predicted gene 6542
Tssr150642 18 36610416 to 36610443 27 + TSS region transcription start site region 150642
Tssr150643 18 36635554 to 36635557 3 + TSS region transcription start site region 150643
Tssr150644 18 36638185 to 36638206 21 + TSS region transcription start site region 150644
Tssr150645 18 36638574 to 36638585 11 + TSS region transcription start site region 150645
Tssr150646 18 36641615 to 36641630 15 + TSS region transcription start site region 150646
Eif4ebp3 18 36664060 to 36665917 1857 + protein coding gene eukaryotic translation initiation factor 4E binding protein 3
Tssr150647 18 36664106 to 36664124 18 + TSS region transcription start site region 150647
Tssr150648 18 36664132 to 36664157 25 + TSS region transcription start site region 150648
Tssr150649 18 36665321 to 36665347 26 + TSS region transcription start site region 150649
Sra1 18 36667187 to 36670311 3124 - protein coding gene steroid receptor RNA activator 1
Cpgi9870 18 36670031 to 36670447 416 CpG island CpG island 9870
Tssr152943 18 36670269 to 36670317 48 - TSS region transcription start site region 152943
Apbb3 18 36671154 to 36679366 8212 - protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 3
5830431N17Rik 18 36671971 to 36672468 497 unclassified gene RIKEN cDNA 5830431N17 gene
Tssr152944 18 36678269 to 36678273 4 - TSS region transcription start site region 152944
Cpgi9871 18 36678886 to 36679654 768 CpG island CpG island 9871
Tssr152945 18 36679111 to 36679135 24 - TSS region transcription start site region 152945
Tssr152946 18 36679141 to 36679168 27 - TSS region transcription start site region 152946
Tssr150650 18 36679193 to 36679253 60 + TSS region transcription start site region 150650
Slc35a4 18 36679215 to 36683861 4646 + protein coding gene solute carrier family 35, member A4
Tssr152947 18 36679227 to 36679250 23 - TSS region transcription start site region 152947
Tssr152948 18 36679258 to 36679279 21 - TSS region transcription start site region 152948
Tssr152949 18 36679285 to 36679349 64 - TSS region transcription start site region 152949
Tssr152950 18 36679353 to 36679380 27 - TSS region transcription start site region 152950
Tssr152951 18 36679423 to 36679438 15 - TSS region transcription start site region 152951
Tssr152952 18 36679470 to 36679497 27 - TSS region transcription start site region 152952
Tssr150651 18 36679575 to 36679592 17 + TSS region transcription start site region 150651
E230025N22Rik 18 36684923 to 36695925 11002 - protein coding gene Riken cDNA E230025N22 gene
Tssr152953 18 36700542 to 36700574 32 - TSS region transcription start site region 152953
Tssr150652 18 36702433 to 36702452 19 + TSS region transcription start site region 150652
Gm41699 18 36709020 to 36718962 9942 + lncRNA gene predicted gene, 41699
Tssr150653 18 36709206 to 36709224 18 + TSS region transcription start site region 150653
Tssr150654 18 36709229 to 36709240 11 + TSS region transcription start site region 150654
Tssr152954 18 36713359 to 36713363 4 - TSS region transcription start site region 152954
Tssr150655 18 36713669 to 36713718 49 + TSS region transcription start site region 150655
Tssr5283 18 36719953 to 36719960 7 - TSS region transcription start site region 5283
Tssr152955 18 36720021 to 36720026 5 - TSS region transcription start site region 152955
Tssr150656 18 36720216 to 36720239 23 + TSS region transcription start site region 150656
Cd14 18 36725074 to 36726736 1662 - protein coding gene CD14 antigen
Tssr152956 18 36725097 to 36725127 30 - TSS region transcription start site region 152956
Cpgi9872 18 36725481 to 36726454 973 CpG island CpG island 9872
Tssr150657 18 36725768 to 36725787 19 + TSS region transcription start site region 150657
Tssr150658 18 36725788 to 36725833 45 + TSS region transcription start site region 150658
Tssr150659 18 36725918 to 36725994 76 + TSS region transcription start site region 150659
Tssr152957 18 36726108 to 36726116 8 - TSS region transcription start site region 152957
Tssr152958 18 36726172 to 36726186 14 - TSS region transcription start site region 152958
Tssr152959 18 36726200 to 36726226 26 - TSS region transcription start site region 152959
Tssr152960 18 36726278 to 36726301 23 - TSS region transcription start site region 152960
Tssr150660 18 36726297 to 36726334 37 + TSS region transcription start site region 150660
Tssr152961 18 36726335 to 36726349 14 - TSS region transcription start site region 152961
Tssr152962 18 36726571 to 36726586 15 - TSS region transcription start site region 152962
Tssr152963 18 36726592 to 36726615 23 - TSS region transcription start site region 152963
Tssr152964 18 36726668 to 36726691 23 - TSS region transcription start site region 152964
Tssr152965 18 36726716 to 36726724 8 - TSS region transcription start site region 152965
Tssr152966 18 36726730 to 36726745 15 - TSS region transcription start site region 152966
Tssr152967 18 36726777 to 36726782 5 - TSS region transcription start site region 152967
Tssr150661 18 36727621 to 36727628 7 + TSS region transcription start site region 150661
Cpgi9873 18 36734817 to 36735541 724 CpG island CpG island 9873
Tssr152968 18 36734899 to 36734906 7 - TSS region transcription start site region 152968
Tssr150662 18 36735012 to 36735026 14 + TSS region transcription start site region 150662
Tssr150663 18 36735032 to 36735058 26 + TSS region transcription start site region 150663
Tmco6 18 36735068 to 36742391 7323 + protein coding gene transmembrane and coiled-coil domains 6
Tssr150664 18 36735117 to 36735177 60 + TSS region transcription start site region 150664
Ndufa2 18 36742332 to 36744557 2225 - protein coding gene NADH:ubiquinone oxidoreductase subunit A2
Cpgi9874 18 36744138 to 36745163 1025 CpG island CpG island 9874
Tssr152969 18 36744451 to 36744460 9 - TSS region transcription start site region 152969
Tssr152970 18 36744495 to 36744499 4 - TSS region transcription start site region 152970
Tssr152971 18 36744518 to 36744553 35 - TSS region transcription start site region 152971
Ik 18 36744656 to 36757639 12983 + protein coding gene IK cytokine
Tssr150665 18 36744673 to 36744737 64 + TSS region transcription start site region 150665
Tssr150666 18 36749240 to 36749259 19 + TSS region transcription start site region 150666
Tssr150667 18 36751100 to 36751113 13 + TSS region transcription start site region 150667
Tssr150668 18 36751162 to 36751182 20 + TSS region transcription start site region 150668
Tssr150669 18 36753433 to 36753455 22 + TSS region transcription start site region 150669
Cpgi9875 18 36759844 to 36760634 790 CpG island CpG island 9875
Tssr150670 18 36760214 to 36760292 78 + TSS region transcription start site region 150670
Wdr55 18 36760239 to 36763708 3469 + protein coding gene WD repeat domain 55
Dnd1 18 36763671 to 36766214 2543 - protein coding gene DND microRNA-mediated repression inhibitor 1
Cpgi9876 18 36765068 to 36765577 509 CpG island CpG island 9876
Tssr152972 18 36766192 to 36766205 13 - TSS region transcription start site region 152972
Tssr152973 18 36766218 to 36766237 19 - TSS region transcription start site region 152973
Hars 18 36766530 to 36783205 16675 - protein coding gene histidyl-tRNA synthetase
Tssr152974 18 36770184 to 36770196 12 - TSS region transcription start site region 152974
Tssr152975 18 36772322 to 36772346 24 - TSS region transcription start site region 152975
Tssr152976 18 36772371 to 36772385 14 - TSS region transcription start site region 152976
Cpgi9877 18 36782746 to 36783565 819 CpG island CpG island 9877
Tssr152977 18 36783096 to 36783108 12 - TSS region transcription start site region 152977
Tssr152978 18 36783113 to 36783141 28 - TSS region transcription start site region 152978
Tssr152979 18 36783146 to 36783191 45 - TSS region transcription start site region 152979
Hars2 18 36783209 to 36792562 9353 + protein coding gene histidyl-tRNA synthetase 2
Tssr150671 18 36783222 to 36783235 13 + TSS region transcription start site region 150671
Tssr150672 18 36783236 to 36783271 35 + TSS region transcription start site region 150672
Cpgi9878 18 36793734 to 36794319 585 CpG island CpG island 9878
Tssr150673 18 36793832 to 36793849 17 + TSS region transcription start site region 150673
Tssr150674 18 36793918 to 36793937 19 + TSS region transcription start site region 150674
Zmat2 18 36793923 to 36799660 5737 + protein coding gene zinc finger, matrin type 2
Tssr150675 18 36795102 to 36795128 26 + TSS region transcription start site region 150675
Tssr150676 18 36796029 to 36796042 13 + TSS region transcription start site region 150676
Tssr150677 18 36796060 to 36796073 13 + TSS region transcription start site region 150677
Tssr150678 18 36796520 to 36796536 16 + TSS region transcription start site region 150678
Tssr150679 18 36799301 to 36799306 5 + TSS region transcription start site region 150679
Cpgi9879 18 36801488 to 36802024 536 CpG island CpG island 9879
Tssr150680 18 36801826 to 36801842 16 + TSS region transcription start site region 150680
Tssr150681 18 36801856 to 36801882 26 + TSS region transcription start site region 150681
Vaultrc5 18 36801866 to 36802008 142 + lncRNA gene vault RNA component 5
Gm23424 18 36810891 to 36811000 109 + miRNA gene predicted gene, 23424
Gm6756 18 36920396 to 36922015 1619 + pseudogene predicted gene 6756
Pcdha1 18 36930285 to 37187657 257372 + protein coding gene protocadherin alpha 1
Cpgi9880 18 36931414 to 36932549 1135 CpG island CpG island 9880
Gm37751 18 36933952 to 36935149 1197 - antisense lncRNA gene predicted gene, 37751
Tssr150682 18 36936296 to 36936319 23 + TSS region transcription start site region 150682
Tssr150683 18 36939120 to 36939128 8 + TSS region transcription start site region 150683
Tssr150684 18 36939178 to 36939212 34 + TSS region transcription start site region 150684
Pcdha2 18 36939205 to 37187657 248452 + protein coding gene protocadherin alpha 2
Cpgi9881 18 36940384 to 36941513 1129 CpG island CpG island 9881
Tssr150685 18 36946081 to 36946096 15 + TSS region transcription start site region 150685
Pcdha3 18 36946207 to 37187657 241450 + protein coding gene protocadherin alpha 3
Cpgi9882 18 36947425 to 36947608 183 CpG island CpG island 9882
Cpgi9883 18 36947867 to 36948499 632 CpG island CpG island 9883
Tssr150686 18 36952621 to 36952660 39 + TSS region transcription start site region 150686
Gm38225 18 36952651 to 36953043 392 - antisense lncRNA gene predicted gene, 38225
Pcdha4 18 36952689 to 37187657 234968 + protein coding gene protocadherin alpha 4
Gm42416 18 36952741 to 37840200 887459 + protein coding gene predicted gene, 42416
Cpgi9884 18 36953843 to 36955022 1179 CpG island CpG island 9884
Tssr150687 18 36960269 to 36960298 29 + TSS region transcription start site region 150687
Pcdha5 18 36960440 to 37187657 227217 + protein coding gene protocadherin alpha 5
Cpgi9885 18 36961474 to 36962671 1197 CpG island CpG island 9885
Gm37753 18 36967591 to 36968148 557 - antisense lncRNA gene predicted gene, 37753
Tssr150688 18 36967619 to 36967650 31 + TSS region transcription start site region 150688
Gm38666 18 36967631 to 37841873 874242 + protein coding gene predicted gene, 38666
Pcdha6 18 36967756 to 37187657 219901 + protein coding gene protocadherin alpha 6
Cpgi9886 18 36968829 to 36969831 1002 CpG island CpG island 9886
Gm37013 18 36969916 to 37833296 863380 + protein coding gene predicted gene, 37013
Tssr150689 18 36973799 to 36973816 17 + TSS region transcription start site region 150689
Gm38667 18 36973802 to 37841873 868071 + protein coding gene predicted gene, 38667
Pcdha7 18 36973924 to 37187657 213733 + protein coding gene protocadherin alpha 7
Cpgi9887 18 36974977 to 36976271 1294 CpG island CpG island 9887
Gm37388 18 36975941 to 37833296 857355 + protein coding gene predicted gene, 37388
Gm36858 18 36980057 to 36989575 9518 + pseudogene predicted gene, 36858
Pcdha8 18 36992467 to 37187657 195190 + protein coding gene protocadherin alpha 8
Cpgi9888 18 36992608 to 36992892 284 CpG island CpG island 9888
Cpgi9889 18 36993709 to 36994795 1086 CpG island CpG island 9889
Tssr5284 18 36997807 to 36997825 18 + TSS region transcription start site region 5284
Pcdha9 18 36997880 to 37187657 189777 + protein coding gene protocadherin alpha 9
Cpgi9890 18 36998059 to 36998276 217 CpG island CpG island 9890
Cpgi9891 18 36999314 to 37000150 836 CpG island CpG island 9891
Pcdha10 18 37005320 to 37187657 182337 + protein coding gene protocadherin alpha 10
Cpgi9892 18 37006541 to 37007272 731 CpG island CpG island 9892
Gm10545 18 37008868 to 37020679 11811 - antisense lncRNA gene predicted gene 10545
Tssr5285 18 37010705 to 37010720 15 + TSS region transcription start site region 5285
Pcdha11 18 37010858 to 37187657 176799 + protein coding gene protocadherin alpha 11
Cpgi9893 18 37012137 to 37013030 893 CpG island CpG island 9893
Gm18150 18 37014056 to 37014631 575 + pseudogene predicted gene, 18150
Tssr150690 18 37020097 to 37020138 41 + TSS region transcription start site region 150690