Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:36257543-39737569

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732 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9864 18 36280480 to 36281983 1503 CpG island CpG island 9864
Tssr150596 18 36280551 to 36280567 16 + TSS region transcription start site region 150596
Tssr152929 18 36280975 to 36280989 14 - TSS region transcription start site region 152929
Tssr150597 18 36281069 to 36281151 82 + TSS region transcription start site region 150597
Pura 18 36281097 to 36289723 8626 + protein coding gene purine rich element binding protein A
Tssr150598 18 36281348 to 36281386 38 + TSS region transcription start site region 150598
Tssr150599 18 36281389 to 36281402 13 + TSS region transcription start site region 150599
Tssr150600 18 36281446 to 36281459 13 + TSS region transcription start site region 150600
Tssr150601 18 36281465 to 36281504 39 + TSS region transcription start site region 150601
Tssr150602 18 36281511 to 36281518 7 + TSS region transcription start site region 150602
Cpgi9865 18 36286008 to 36288035 2027 CpG island CpG island 9865
Tssr150603 18 36286362 to 36286419 57 + TSS region transcription start site region 150603
Tssr152930 18 36286974 to 36286996 22 - TSS region transcription start site region 152930
Tssr150604 18 36287075 to 36287161 86 + TSS region transcription start site region 150604
Tssr150605 18 36287275 to 36287286 11 + TSS region transcription start site region 150605
Tssr150606 18 36287898 to 36287910 12 + TSS region transcription start site region 150606
Tssr150607 18 36287945 to 36287958 13 + TSS region transcription start site region 150607
Tssr150608 18 36288012 to 36288038 26 + TSS region transcription start site region 150608
Tssr150609 18 36288066 to 36288079 13 + TSS region transcription start site region 150609
Tssr150610 18 36288110 to 36288123 13 + TSS region transcription start site region 150610
Tssr150611 18 36289423 to 36289442 19 + TSS region transcription start site region 150611
Tssr150612 18 36290022 to 36290036 14 + TSS region transcription start site region 150612
Tssr150613 18 36291115 to 36291127 12 + TSS region transcription start site region 150613
Tssr150614 18 36292624 to 36292628 4 + TSS region transcription start site region 150614
Gm45884 18 36292626 to 36296041 3415 + unclassified gene predicted gene 45884
Igip 18 36300101 to 36301478 1377 + protein coding gene IgA inducing protein
Gm41696 18 36319368 to 36332143 12775 + lncRNA gene predicted gene, 41696
Cpgi9866 18 36319669 to 36321004 1335 CpG island CpG island 9866
4930477J04Rik 18 36320905 to 36321491 586 unclassified gene RIKEN cDNA 4930477J04 gene
Tssr152931 18 36321526 to 36321537 11 - TSS region transcription start site region 152931
Tssr150615 18 36342928 to 36342933 5 + TSS region transcription start site region 150615
Tssr150616 18 36342944 to 36342950 6 + TSS region transcription start site region 150616
Tssr150617 18 36343081 to 36343116 35 + TSS region transcription start site region 150617
Tssr150618 18 36344576 to 36344589 13 + TSS region transcription start site region 150618
Cpgi9867 18 36348201 to 36349275 1074 CpG island CpG island 9867
Cystm1 18 36348624 to 36393370 44746 + protein coding gene cysteine-rich transmembrane module containing 1
Tssr150619 18 36348653 to 36348728 75 + TSS region transcription start site region 150619
Tssr150620 18 36348739 to 36348779 40 + TSS region transcription start site region 150620
Tssr150621 18 36348794 to 36348803 9 + TSS region transcription start site region 150621
Tssr150622 18 36348916 to 36348930 14 + TSS region transcription start site region 150622
Tssr150623 18 36348935 to 36348957 22 + TSS region transcription start site region 150623
Tssr150624 18 36365774 to 36365785 11 + TSS region transcription start site region 150624
Tssr150625 18 36365812 to 36365823 11 + TSS region transcription start site region 150625
Tssr150626 18 36366563 to 36366587 24 + TSS region transcription start site region 150626
Tssr150627 18 36390922 to 36390926 4 + TSS region transcription start site region 150627
Pfdn1 18 36403679 to 36454495 50816 - protein coding gene prefoldin 1
Tssr152932 18 36416593 to 36416598 5 - TSS region transcription start site region 152932
Tssr152933 18 36453830 to 36453835 5 - TSS region transcription start site region 152933
Tssr152934 18 36454487 to 36454516 29 - TSS region transcription start site region 152934
Tssr152935 18 36454523 to 36454535 12 - TSS region transcription start site region 152935
Hbegf 18 36504929 to 36515805 10876 - protein coding gene heparin-binding EGF-like growth factor
Cpgi9868 18 36515063 to 36516264 1201 CpG island CpG island 9868
Tssr152936 18 36515767 to 36515787 20 - TSS region transcription start site region 152936
Tssr152937 18 36515798 to 36515812 14 - TSS region transcription start site region 152937
Gm41698 18 36515946 to 36519145 3199 + lncRNA gene predicted gene, 41698
Tssr150628 18 36528145 to 36528154 9 + TSS region transcription start site region 150628
Slc4a9 18 36528157 to 36541293 13136 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter, member 9
Tssr150629 18 36529205 to 36529208 3 + TSS region transcription start site region 150629
Tssr150630 18 36529223 to 36529241 18 + TSS region transcription start site region 150630
Tssr150631 18 36529243 to 36529251 8 + TSS region transcription start site region 150631
Tssr150632 18 36531032 to 36531048 16 + TSS region transcription start site region 150632
Cpgi9869 18 36559371 to 36561576 2205 CpG island CpG island 9869
Tssr152938 18 36559831 to 36559851 20 - TSS region transcription start site region 152938
Tssr152939 18 36559887 to 36559912 25 - TSS region transcription start site region 152939
Tssr150633 18 36559972 to 36560003 31 + TSS region transcription start site region 150633
Tssr152940 18 36560153 to 36560178 25 - TSS region transcription start site region 152940
Tssr152941 18 36560205 to 36560230 25 - TSS region transcription start site region 152941
Tssr150634 18 36560581 to 36560620 39 + TSS region transcription start site region 150634
Ankhd1 18 36560603 to 36658908 98305 + protein coding gene ankyrin repeat and KH domain containing 1
Tssr150635 18 36560630 to 36560657 27 + TSS region transcription start site region 150635
Tssr150636 18 36560660 to 36560674 14 + TSS region transcription start site region 150636
Tssr150637 18 36563682 to 36563686 4 + TSS region transcription start site region 150637
Tssr150638 18 36571703 to 36571707 4 + TSS region transcription start site region 150638
Tssr150639 18 36573580 to 36573585 5 + TSS region transcription start site region 150639
Tssr150640 18 36597780 to 36597791 11 + TSS region transcription start site region 150640
Tssr152942 18 36606091 to 36606127 36 - TSS region transcription start site region 152942
Tssr150641 18 36606173 to 36606189 16 + TSS region transcription start site region 150641
Tssr5282 18 36606189 to 36606196 7 + TSS region transcription start site region 5282
Gm6542 18 36609958 to 36610729 771 + pseudogene predicted gene 6542
Tssr150642 18 36610416 to 36610443 27 + TSS region transcription start site region 150642
Tssr150643 18 36635554 to 36635557 3 + TSS region transcription start site region 150643
Tssr150644 18 36638185 to 36638206 21 + TSS region transcription start site region 150644
Tssr150645 18 36638574 to 36638585 11 + TSS region transcription start site region 150645
Tssr150646 18 36641615 to 36641630 15 + TSS region transcription start site region 150646
Eif4ebp3 18 36664060 to 36665917 1857 + protein coding gene eukaryotic translation initiation factor 4E binding protein 3
Tssr150647 18 36664106 to 36664124 18 + TSS region transcription start site region 150647
Tssr150648 18 36664132 to 36664157 25 + TSS region transcription start site region 150648
Tssr150649 18 36665321 to 36665347 26 + TSS region transcription start site region 150649
Sra1 18 36667187 to 36670311 3124 - protein coding gene steroid receptor RNA activator 1
Cpgi9870 18 36670031 to 36670447 416 CpG island CpG island 9870
Tssr152943 18 36670269 to 36670317 48 - TSS region transcription start site region 152943
Apbb3 18 36671154 to 36679366 8212 - protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 3
5830431N17Rik 18 36671971 to 36672468 497 unclassified gene RIKEN cDNA 5830431N17 gene
Tssr152944 18 36678269 to 36678273 4 - TSS region transcription start site region 152944
Cpgi9871 18 36678886 to 36679654 768 CpG island CpG island 9871
Tssr152945 18 36679111 to 36679135 24 - TSS region transcription start site region 152945
Tssr152946 18 36679141 to 36679168 27 - TSS region transcription start site region 152946
Tssr150650 18 36679193 to 36679253 60 + TSS region transcription start site region 150650
Slc35a4 18 36679215 to 36683861 4646 + protein coding gene solute carrier family 35, member A4
Tssr152947 18 36679227 to 36679250 23 - TSS region transcription start site region 152947
Tssr152948 18 36679258 to 36679279 21 - TSS region transcription start site region 152948
Tssr152949 18 36679285 to 36679349 64 - TSS region transcription start site region 152949
Tssr152950 18 36679353 to 36679380 27 - TSS region transcription start site region 152950
Tssr152951 18 36679423 to 36679438 15 - TSS region transcription start site region 152951
Tssr152952 18 36679470 to 36679497 27 - TSS region transcription start site region 152952
Tssr150651 18 36679575 to 36679592 17 + TSS region transcription start site region 150651
E230025N22Rik 18 36684923 to 36695925 11002 - protein coding gene Riken cDNA E230025N22 gene
Tssr152953 18 36700542 to 36700574 32 - TSS region transcription start site region 152953
Tssr150652 18 36702433 to 36702452 19 + TSS region transcription start site region 150652
Gm41699 18 36709020 to 36718962 9942 + lncRNA gene predicted gene, 41699
Tssr150653 18 36709206 to 36709224 18 + TSS region transcription start site region 150653
Tssr150654 18 36709229 to 36709240 11 + TSS region transcription start site region 150654
Tssr152954 18 36713359 to 36713363 4 - TSS region transcription start site region 152954
Tssr150655 18 36713669 to 36713718 49 + TSS region transcription start site region 150655
Tssr5283 18 36719953 to 36719960 7 - TSS region transcription start site region 5283
Tssr152955 18 36720021 to 36720026 5 - TSS region transcription start site region 152955
Tssr150656 18 36720216 to 36720239 23 + TSS region transcription start site region 150656
Cd14 18 36725074 to 36726736 1662 - protein coding gene CD14 antigen
Tssr152956 18 36725097 to 36725127 30 - TSS region transcription start site region 152956
Cpgi9872 18 36725481 to 36726454 973 CpG island CpG island 9872
Tssr150657 18 36725768 to 36725787 19 + TSS region transcription start site region 150657
Tssr150658 18 36725788 to 36725833 45 + TSS region transcription start site region 150658
Tssr150659 18 36725918 to 36725994 76 + TSS region transcription start site region 150659
Tssr152957 18 36726108 to 36726116 8 - TSS region transcription start site region 152957
Tssr152958 18 36726172 to 36726186 14 - TSS region transcription start site region 152958
Tssr152959 18 36726200 to 36726226 26 - TSS region transcription start site region 152959
Tssr152960 18 36726278 to 36726301 23 - TSS region transcription start site region 152960
Tssr150660 18 36726297 to 36726334 37 + TSS region transcription start site region 150660
Tssr152961 18 36726335 to 36726349 14 - TSS region transcription start site region 152961
Tssr152962 18 36726571 to 36726586 15 - TSS region transcription start site region 152962
Tssr152963 18 36726592 to 36726615 23 - TSS region transcription start site region 152963
Tssr152964 18 36726668 to 36726691 23 - TSS region transcription start site region 152964
Tssr152965 18 36726716 to 36726724 8 - TSS region transcription start site region 152965
Tssr152966 18 36726730 to 36726745 15 - TSS region transcription start site region 152966
Tssr152967 18 36726777 to 36726782 5 - TSS region transcription start site region 152967
Tssr150661 18 36727621 to 36727628 7 + TSS region transcription start site region 150661
Cpgi9873 18 36734817 to 36735541 724 CpG island CpG island 9873
Tssr152968 18 36734899 to 36734906 7 - TSS region transcription start site region 152968
Tssr150662 18 36735012 to 36735026 14 + TSS region transcription start site region 150662
Tssr150663 18 36735032 to 36735058 26 + TSS region transcription start site region 150663
Tmco6 18 36735068 to 36742391 7323 + protein coding gene transmembrane and coiled-coil domains 6
Tssr150664 18 36735117 to 36735177 60 + TSS region transcription start site region 150664
Ndufa2 18 36742332 to 36744557 2225 - protein coding gene NADH:ubiquinone oxidoreductase subunit A2
Cpgi9874 18 36744138 to 36745163 1025 CpG island CpG island 9874
Tssr152969 18 36744451 to 36744460 9 - TSS region transcription start site region 152969
Tssr152970 18 36744495 to 36744499 4 - TSS region transcription start site region 152970
Tssr152971 18 36744518 to 36744553 35 - TSS region transcription start site region 152971
Ik 18 36744656 to 36757639 12983 + protein coding gene IK cytokine
Tssr150665 18 36744673 to 36744737 64 + TSS region transcription start site region 150665
Tssr150666 18 36749240 to 36749259 19 + TSS region transcription start site region 150666
Tssr150667 18 36751100 to 36751113 13 + TSS region transcription start site region 150667
Tssr150668 18 36751162 to 36751182 20 + TSS region transcription start site region 150668
Tssr150669 18 36753433 to 36753455 22 + TSS region transcription start site region 150669
Cpgi9875 18 36759844 to 36760634 790 CpG island CpG island 9875
Tssr150670 18 36760214 to 36760292 78 + TSS region transcription start site region 150670
Wdr55 18 36760239 to 36763708 3469 + protein coding gene WD repeat domain 55
Dnd1 18 36763671 to 36766214 2543 - protein coding gene DND microRNA-mediated repression inhibitor 1
Cpgi9876 18 36765068 to 36765577 509 CpG island CpG island 9876
Tssr152972 18 36766192 to 36766205 13 - TSS region transcription start site region 152972
Tssr152973 18 36766218 to 36766237 19 - TSS region transcription start site region 152973
Hars 18 36766530 to 36783205 16675 - protein coding gene histidyl-tRNA synthetase
Tssr152974 18 36770184 to 36770196 12 - TSS region transcription start site region 152974
Tssr152975 18 36772322 to 36772346 24 - TSS region transcription start site region 152975
Tssr152976 18 36772371 to 36772385 14 - TSS region transcription start site region 152976
Cpgi9877 18 36782746 to 36783565 819 CpG island CpG island 9877
Tssr152977 18 36783096 to 36783108 12 - TSS region transcription start site region 152977
Tssr152978 18 36783113 to 36783141 28 - TSS region transcription start site region 152978
Tssr152979 18 36783146 to 36783191 45 - TSS region transcription start site region 152979
Hars2 18 36783209 to 36792562 9353 + protein coding gene histidyl-tRNA synthetase 2
Tssr150671 18 36783222 to 36783235 13 + TSS region transcription start site region 150671
Tssr150672 18 36783236 to 36783271 35 + TSS region transcription start site region 150672
Cpgi9878 18 36793734 to 36794319 585 CpG island CpG island 9878
Tssr150673 18 36793832 to 36793849 17 + TSS region transcription start site region 150673
Tssr150674 18 36793918 to 36793937 19 + TSS region transcription start site region 150674
Zmat2 18 36793923 to 36799660 5737 + protein coding gene zinc finger, matrin type 2
Tssr150675 18 36795102 to 36795128 26 + TSS region transcription start site region 150675
Tssr150676 18 36796029 to 36796042 13 + TSS region transcription start site region 150676
Tssr150677 18 36796060 to 36796073 13 + TSS region transcription start site region 150677
Tssr150678 18 36796520 to 36796536 16 + TSS region transcription start site region 150678
Tssr150679 18 36799301 to 36799306 5 + TSS region transcription start site region 150679
Cpgi9879 18 36801488 to 36802024 536 CpG island CpG island 9879
Tssr150680 18 36801826 to 36801842 16 + TSS region transcription start site region 150680
Tssr150681 18 36801856 to 36801882 26 + TSS region transcription start site region 150681
Vaultrc5 18 36801866 to 36802008 142 + lncRNA gene vault RNA component 5
Gm23424 18 36810891 to 36811000 109 + miRNA gene predicted gene, 23424
Gm6756 18 36920396 to 36922015 1619 + pseudogene predicted gene 6756
Pcdha1 18 36930285 to 37187657 257372 + protein coding gene protocadherin alpha 1
Cpgi9880 18 36931414 to 36932549 1135 CpG island CpG island 9880
Gm37751 18 36933952 to 36935149 1197 - antisense lncRNA gene predicted gene, 37751
Tssr150682 18 36936296 to 36936319 23 + TSS region transcription start site region 150682
Tssr150683 18 36939120 to 36939128 8 + TSS region transcription start site region 150683
Tssr150684 18 36939178 to 36939212 34 + TSS region transcription start site region 150684
Pcdha2 18 36939205 to 37187657 248452 + protein coding gene protocadherin alpha 2
Cpgi9881 18 36940384 to 36941513 1129 CpG island CpG island 9881
Tssr150685 18 36946081 to 36946096 15 + TSS region transcription start site region 150685
Pcdha3 18 36946207 to 37187657 241450 + protein coding gene protocadherin alpha 3
Cpgi9882 18 36947425 to 36947608 183 CpG island CpG island 9882
Cpgi9883 18 36947867 to 36948499 632 CpG island CpG island 9883
Tssr150686 18 36952621 to 36952660 39 + TSS region transcription start site region 150686
Gm38225 18 36952651 to 36953043 392 - antisense lncRNA gene predicted gene, 38225