Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:35853611-36283621

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
Cxxc5 18 35829818 to 35861687 31869 + protein coding gene CXXC finger 5
Tssr150577 18 35854679 to 35854715 36 + TSS region transcription start site region 150577
Tssr150578 18 35854717 to 35854732 15 + TSS region transcription start site region 150578
Tssr150579 18 35854734 to 35854750 16 + TSS region transcription start site region 150579
Cpgi9848 18 35855571 to 35855856 285 CpG island CpG island 9848
Cpgi9849 18 35858540 to 35858801 261 CpG island CpG island 9849
Tssr150580 18 35858693 to 35858705 12 + TSS region transcription start site region 150580
Cpgi9850 18 35859057 to 35859461 404 CpG island CpG island 9850
Gm41693 18 35871836 to 35877311 5475 + lncRNA gene predicted gene, 41693
Cpgi9851 18 35873218 to 35874055 837 CpG island CpG island 9851
Tssr150581 18 35873502 to 35873505 3 + TSS region transcription start site region 150581
Cpgi9852 18 35878958 to 35879210 252 CpG island CpG island 9852
D18Mit12 18 35885821 to 35885939 118 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 12
Kcal1 18 35885821 to 35885939 118 QTL kilocalorie 1
Im7 18 35885821 to 35885939 118 QTL immunoregulatory 7
Cpgi9853 18 35887541 to 35890399 2858 CpG island CpG island 9853
Tssr150582 18 35888548 to 35888586 38 + TSS region transcription start site region 150582
Gm36315 18 35888769 to 35890859 2090 - lncRNA gene predicted gene, 36315
Tssr150583 18 35889675 to 35889697 22 + TSS region transcription start site region 150583
Tssr152919 18 35889791 to 35889802 11 - TSS region transcription start site region 152919
Tssr150584 18 35910328 to 35910337 9 + TSS region transcription start site region 150584
Tssr152920 18 35910408 to 35910416 8 - TSS region transcription start site region 152920
C330008A17Rik 18 35913131 to 35916771 3640 unclassified gene RIKEN cDNA C330008A17 gene
Cpgi9854 18 35918903 to 35921347 2444 CpG island CpG island 9854
Gm36416 18 35920778 to 35921763 985 - lncRNA gene predicted gene, 36416
Cpgi9855 18 35930251 to 35931054 803 CpG island CpG island 9855
Cpgi9856 18 35932982 to 35933960 978 CpG island CpG island 9856
Tssr152921 18 35938205 to 35938209 4 - TSS region transcription start site region 152921
Cpgi9857 18 35938232 to 35938835 603 CpG island CpG island 9857
Cpgi9858 18 35939470 to 35939976 506 CpG island CpG island 9858
Tssr150585 18 35942369 to 35942409 40 + TSS region transcription start site region 150585
Gm23882 18 35952824 to 35952907 83 + miRNA gene predicted gene, 23882
Gm36461 18 35957292 to 35963582 6290 + lncRNA gene predicted gene, 36461
Cpgi9859 18 35964645 to 35965499 854 CpG island CpG island 9859
Psd2 18 35964830 to 36014715 49885 + protein coding gene pleckstrin and Sec7 domain containing 2
Tssr150586 18 35965009 to 35965023 14 + TSS region transcription start site region 150586
Tssr150587 18 35965036 to 35965087 51 + TSS region transcription start site region 150587
Tssr150588 18 35965088 to 35965110 22 + TSS region transcription start site region 150588
Tssr150589 18 35999335 to 35999358 23 + TSS region transcription start site region 150589
Tssr150590 18 36013317 to 36013327 10 + TSS region transcription start site region 150590
Nrg2 18 36017707 to 36197380 179673 - protein coding gene neuregulin 2
Cpgi9860 18 36017849 to 36018936 1087 CpG island CpG island 9860
D18Mit120 18 36054514 to 36054687 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 120
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27
Tssr152922 18 36067630 to 36067635 5 - TSS region transcription start site region 152922
Cpgi9861 18 36067727 to 36068946 1219 CpG island CpG island 9861
Tssr152923 18 36068611 to 36068621 10 - TSS region transcription start site region 152923
Gm41694 18 36070234 to 36084205 13971 + lncRNA gene predicted gene, 41694
Cpgi9862 18 36100410 to 36100651 241 CpG island CpG island 9862
Tssr152924 18 36103187 to 36103189 2 - TSS region transcription start site region 152924
Tssr150591 18 36106164 to 36106173 9 + TSS region transcription start site region 150591
Tssr150592 18 36106180 to 36106222 42 + TSS region transcription start site region 150592
4930471G03Rik 18 36106203 to 36109954 3751 + lncRNA gene RIKEN cDNA 4930471G03 gene
Tssr150593 18 36109627 to 36109629 2 + TSS region transcription start site region 150593
Tssr150594 18 36109811 to 36109816 5 + TSS region transcription start site region 150594
Tssr150595 18 36109849 to 36109856 7 + TSS region transcription start site region 150595
Tssr152925 18 36126343 to 36126345 2 - TSS region transcription start site region 152925
Tssr5281 18 36195678 to 36195679 1 + TSS region transcription start site region 5281
Cpgi9863 18 36195867 to 36197719 1852 CpG island CpG island 9863
Tssr152926 18 36197315 to 36197329 14 - TSS region transcription start site region 152926
Tssr152927 18 36197343 to 36197403 60 - TSS region transcription start site region 152927
Gm41695 18 36240161 to 36243200 3039 + lncRNA gene predicted gene, 41695
Tssr152928 18 36255149 to 36255158 9 - TSS region transcription start site region 152928
Cpgi9864 18 36280480 to 36281983 1503 CpG island CpG island 9864
Tssr150596 18 36280551 to 36280567 16 + TSS region transcription start site region 150596
Tssr152929 18 36280975 to 36280989 14 - TSS region transcription start site region 152929
Tssr150597 18 36281069 to 36281151 82 + TSS region transcription start site region 150597
Pura 18 36281097 to 36289723 8626 + protein coding gene purine rich element binding protein A
Tssr150598 18 36281348 to 36281386 38 + TSS region transcription start site region 150598
Tssr150599 18 36281389 to 36281402 13 + TSS region transcription start site region 150599
Tssr150600 18 36281446 to 36281459 13 + TSS region transcription start site region 150600
Tssr150601 18 36281465 to 36281504 39 + TSS region transcription start site region 150601
Tssr150602 18 36281511 to 36281518 7 + TSS region transcription start site region 150602