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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:35799811-36419816

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
Ube2d2a 18 35771559 to 35807172 35613 + protein coding gene ubiquitin-conjugating enzyme E2D 2A
Tssr150565 18 35806454 to 35806465 11 + TSS region transcription start site region 150565
Cpgi9843 18 35814732 to 35815085 353 CpG island CpG island 9843
Tssr152917 18 35822865 to 35822875 10 - TSS region transcription start site region 152917
Tssr150566 18 35828798 to 35828815 17 + TSS region transcription start site region 150566
Tssr150567 18 35828853 to 35828868 15 + TSS region transcription start site region 150567
Cpgi9844 18 35829160 to 35831196 2036 CpG island CpG island 9844
Tssr150568 18 35829730 to 35829756 26 + TSS region transcription start site region 150568
Tssr150569 18 35829779 to 35829795 16 + TSS region transcription start site region 150569
Tssr150570 18 35829798 to 35829821 23 + TSS region transcription start site region 150570
Cxxc5 18 35829818 to 35861687 31869 + protein coding gene CXXC finger 5
Tssr150571 18 35829828 to 35829839 11 + TSS region transcription start site region 150571
Tssr150572 18 35829840 to 35829851 11 + TSS region transcription start site region 150572
Tssr150573 18 35830091 to 35830111 20 + TSS region transcription start site region 150573
Tssr152918 18 35830125 to 35830137 12 - TSS region transcription start site region 152918
Tssr150574 18 35830179 to 35830208 29 + TSS region transcription start site region 150574
Tssr150575 18 35830300 to 35830363 63 + TSS region transcription start site region 150575
Gm29417 18 35830389 to 35831093 704 - antisense lncRNA gene predicted gene 29417
Tssr150576 18 35830971 to 35830973 2 + TSS region transcription start site region 150576
Cpgi9845 18 35831298 to 35831495 197 CpG island CpG island 9845
Cpgi9846 18 35831633 to 35832306 673 CpG island CpG island 9846
Cpgi9847 18 35847904 to 35848611 707 CpG island CpG island 9847
Tssr150577 18 35854679 to 35854715 36 + TSS region transcription start site region 150577
Tssr150578 18 35854717 to 35854732 15 + TSS region transcription start site region 150578
Tssr150579 18 35854734 to 35854750 16 + TSS region transcription start site region 150579
Cpgi9848 18 35855571 to 35855856 285 CpG island CpG island 9848
Cpgi9849 18 35858540 to 35858801 261 CpG island CpG island 9849
Tssr150580 18 35858693 to 35858705 12 + TSS region transcription start site region 150580
Cpgi9850 18 35859057 to 35859461 404 CpG island CpG island 9850
Gm41693 18 35871836 to 35877311 5475 + lncRNA gene predicted gene, 41693
Cpgi9851 18 35873218 to 35874055 837 CpG island CpG island 9851
Tssr150581 18 35873502 to 35873505 3 + TSS region transcription start site region 150581
Cpgi9852 18 35878958 to 35879210 252 CpG island CpG island 9852
D18Mit12 18 35885821 to 35885939 118 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 12
Kcal1 18 35885821 to 35885939 118 QTL kilocalorie 1
Im7 18 35885821 to 35885939 118 QTL immunoregulatory 7
Cpgi9853 18 35887541 to 35890399 2858 CpG island CpG island 9853
Tssr150582 18 35888548 to 35888586 38 + TSS region transcription start site region 150582
Gm36315 18 35888769 to 35890859 2090 - lncRNA gene predicted gene, 36315
Tssr150583 18 35889675 to 35889697 22 + TSS region transcription start site region 150583
Tssr152919 18 35889791 to 35889802 11 - TSS region transcription start site region 152919
Tssr150584 18 35910328 to 35910337 9 + TSS region transcription start site region 150584
Tssr152920 18 35910408 to 35910416 8 - TSS region transcription start site region 152920
C330008A17Rik 18 35913131 to 35916771 3640 unclassified gene RIKEN cDNA C330008A17 gene
Cpgi9854 18 35918903 to 35921347 2444 CpG island CpG island 9854
Gm36416 18 35920778 to 35921763 985 - lncRNA gene predicted gene, 36416
Cpgi9855 18 35930251 to 35931054 803 CpG island CpG island 9855
Cpgi9856 18 35932982 to 35933960 978 CpG island CpG island 9856
Tssr152921 18 35938205 to 35938209 4 - TSS region transcription start site region 152921
Cpgi9857 18 35938232 to 35938835 603 CpG island CpG island 9857
Cpgi9858 18 35939470 to 35939976 506 CpG island CpG island 9858
Tssr150585 18 35942369 to 35942409 40 + TSS region transcription start site region 150585
Gm23882 18 35952824 to 35952907 83 + miRNA gene predicted gene, 23882
Gm36461 18 35957292 to 35963582 6290 + lncRNA gene predicted gene, 36461
Cpgi9859 18 35964645 to 35965499 854 CpG island CpG island 9859
Psd2 18 35964830 to 36014715 49885 + protein coding gene pleckstrin and Sec7 domain containing 2
Tssr150586 18 35965009 to 35965023 14 + TSS region transcription start site region 150586
Tssr150587 18 35965036 to 35965087 51 + TSS region transcription start site region 150587
Tssr150588 18 35965088 to 35965110 22 + TSS region transcription start site region 150588
Tssr150589 18 35999335 to 35999358 23 + TSS region transcription start site region 150589
Tssr150590 18 36013317 to 36013327 10 + TSS region transcription start site region 150590
Nrg2 18 36017707 to 36197380 179673 - protein coding gene neuregulin 2
Cpgi9860 18 36017849 to 36018936 1087 CpG island CpG island 9860
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27
D18Mit120 18 36054514 to 36054687 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 120
Tssr152922 18 36067630 to 36067635 5 - TSS region transcription start site region 152922
Cpgi9861 18 36067727 to 36068946 1219 CpG island CpG island 9861
Tssr152923 18 36068611 to 36068621 10 - TSS region transcription start site region 152923
Gm41694 18 36070234 to 36084205 13971 + lncRNA gene predicted gene, 41694
Cpgi9862 18 36100410 to 36100651 241 CpG island CpG island 9862
Tssr152924 18 36103187 to 36103189 2 - TSS region transcription start site region 152924
Tssr150591 18 36106164 to 36106173 9 + TSS region transcription start site region 150591
Tssr150592 18 36106180 to 36106222 42 + TSS region transcription start site region 150592
4930471G03Rik 18 36106203 to 36109954 3751 + lncRNA gene RIKEN cDNA 4930471G03 gene
Tssr150593 18 36109627 to 36109629 2 + TSS region transcription start site region 150593
Tssr150594 18 36109811 to 36109816 5 + TSS region transcription start site region 150594
Tssr150595 18 36109849 to 36109856 7 + TSS region transcription start site region 150595
Tssr152925 18 36126343 to 36126345 2 - TSS region transcription start site region 152925
Tssr5281 18 36195678 to 36195679 1 + TSS region transcription start site region 5281
Cpgi9863 18 36195867 to 36197719 1852 CpG island CpG island 9863
Tssr152926 18 36197315 to 36197329 14 - TSS region transcription start site region 152926
Tssr152927 18 36197343 to 36197403 60 - TSS region transcription start site region 152927
Gm41695 18 36240161 to 36243200 3039 + lncRNA gene predicted gene, 41695
Tssr152928 18 36255149 to 36255158 9 - TSS region transcription start site region 152928
Cpgi9864 18 36280480 to 36281983 1503 CpG island CpG island 9864
Tssr150596 18 36280551 to 36280567 16 + TSS region transcription start site region 150596
Tssr152929 18 36280975 to 36280989 14 - TSS region transcription start site region 152929
Tssr150597 18 36281069 to 36281151 82 + TSS region transcription start site region 150597
Pura 18 36281097 to 36289723 8626 + protein coding gene purine rich element binding protein A
Tssr150598 18 36281348 to 36281386 38 + TSS region transcription start site region 150598
Tssr150599 18 36281389 to 36281402 13 + TSS region transcription start site region 150599
Tssr150600 18 36281446 to 36281459 13 + TSS region transcription start site region 150600
Tssr150601 18 36281465 to 36281504 39 + TSS region transcription start site region 150601
Tssr150602 18 36281511 to 36281518 7 + TSS region transcription start site region 150602
Cpgi9865 18 36286008 to 36288035 2027 CpG island CpG island 9865
Tssr150603 18 36286362 to 36286419 57 + TSS region transcription start site region 150603
Tssr152930 18 36286974 to 36286996 22 - TSS region transcription start site region 152930
Tssr150604 18 36287075 to 36287161 86 + TSS region transcription start site region 150604
Tssr150605 18 36287275 to 36287286 11 + TSS region transcription start site region 150605
Tssr150606 18 36287898 to 36287910 12 + TSS region transcription start site region 150606
Tssr150607 18 36287945 to 36287958 13 + TSS region transcription start site region 150607
Tssr150608 18 36288012 to 36288038 26 + TSS region transcription start site region 150608
Tssr150609 18 36288066 to 36288079 13 + TSS region transcription start site region 150609
Tssr150610 18 36288110 to 36288123 13 + TSS region transcription start site region 150610
Tssr150611 18 36289423 to 36289442 19 + TSS region transcription start site region 150611
Tssr150612 18 36290022 to 36290036 14 + TSS region transcription start site region 150612
Tssr150613 18 36291115 to 36291127 12 + TSS region transcription start site region 150613
Tssr150614 18 36292624 to 36292628 4 + TSS region transcription start site region 150614
Gm45884 18 36292626 to 36296041 3415 + unclassified gene predicted gene 45884
Igip 18 36300101 to 36301478 1377 + protein coding gene IgA inducing protein
Gm41696 18 36319368 to 36332143 12775 + lncRNA gene predicted gene, 41696
Cpgi9866 18 36319669 to 36321004 1335 CpG island CpG island 9866
4930477J04Rik 18 36320905 to 36321491 586 unclassified gene RIKEN cDNA 4930477J04 gene
Tssr152931 18 36321526 to 36321537 11 - TSS region transcription start site region 152931
Tssr150615 18 36342928 to 36342933 5 + TSS region transcription start site region 150615
Tssr150616 18 36342944 to 36342950 6 + TSS region transcription start site region 150616
Tssr150617 18 36343081 to 36343116 35 + TSS region transcription start site region 150617
Tssr150618 18 36344576 to 36344589 13 + TSS region transcription start site region 150618
Cpgi9867 18 36348201 to 36349275 1074 CpG island CpG island 9867
Cystm1 18 36348624 to 36393370 44746 + protein coding gene cysteine-rich transmembrane module containing 1
Tssr150619 18 36348653 to 36348728 75 + TSS region transcription start site region 150619
Tssr150620 18 36348739 to 36348779 40 + TSS region transcription start site region 150620
Tssr150621 18 36348794 to 36348803 9 + TSS region transcription start site region 150621
Tssr150622 18 36348916 to 36348930 14 + TSS region transcription start site region 150622
Tssr150623 18 36348935 to 36348957 22 + TSS region transcription start site region 150623
Tssr150624 18 36365774 to 36365785 11 + TSS region transcription start site region 150624
Tssr150625 18 36365812 to 36365823 11 + TSS region transcription start site region 150625
Tssr150626 18 36366563 to 36366587 24 + TSS region transcription start site region 150626
Tssr150627 18 36390922 to 36390926 4 + TSS region transcription start site region 150627
Pfdn1 18 36403679 to 36454495 50816 - protein coding gene prefoldin 1
Tssr152932 18 36416593 to 36416598 5 - TSS region transcription start site region 152932