Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:35463410-35648316

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Cpgi9835 18 35498504 to 35499151 647 CpG island CpG island 9835
Tssr152868 18 35498816 to 35498829 13 - TSS region transcription start site region 152868
Tssr152869 18 35498844 to 35498853 9 - TSS region transcription start site region 152869
Tssr152870 18 35498856 to 35498925 69 - TSS region transcription start site region 152870
Gm41691 18 35502712 to 35517526 14814 - lncRNA gene predicted gene, 41691
Tssr150522 18 35536539 to 35536546 7 + TSS region transcription start site region 150522
Gm5239 18 35536583 to 35536951 368 + pseudogene predicted pseudogene 5239
Gm41692 18 35540859 to 35542689 1830 + lncRNA gene predicted gene, 41692
Tssr150523 18 35553401 to 35553421 20 + TSS region transcription start site region 150523
Snhg4 18 35553410 to 35558316 4906 + lncRNA gene small nucleolar RNA host gene 4
Tssr150524 18 35553436 to 35553445 9 + TSS region transcription start site region 150524
Tssr150525 18 35553583 to 35553596 13 + TSS region transcription start site region 150525
Mir1949 18 35554567 to 35554636 69 + miRNA gene microRNA 1949
Snora74a 18 35557032 to 35557227 195 + snoRNA gene small nucleolar RNA, H/ACA box 74A
Gm49347 18 35557132 to 35557242 110 + miRNA gene predicted gene, 49347
Cpgi9836 18 35561889 to 35563098 1209 CpG island CpG island 9836
Matr3 18 35562158 to 35592045 29887 + protein coding gene matrin 3
Tssr150526 18 35562167 to 35562174 7 + TSS region transcription start site region 150526
Tssr150527 18 35562180 to 35562197 17 + TSS region transcription start site region 150527
Tssr150528 18 35562200 to 35562260 60 + TSS region transcription start site region 150528
Tssr150529 18 35562262 to 35562273 11 + TSS region transcription start site region 150529
Tssr150530 18 35562286 to 35562297 11 + TSS region transcription start site region 150530
Tssr5279 18 35562331 to 35562357 26 + TSS region transcription start site region 5279
Tssr150531 18 35562434 to 35562490 56 + TSS region transcription start site region 150531
Tssr152871 18 35562522 to 35562533 11 - TSS region transcription start site region 152871
Tssr150532 18 35562734 to 35562751 17 + TSS region transcription start site region 150532
Tssr150533 18 35564390 to 35564394 4 + TSS region transcription start site region 150533
Tssr150534 18 35571480 to 35571486 6 + TSS region transcription start site region 150534
Tssr150535 18 35571984 to 35571999 15 + TSS region transcription start site region 150535
Tssr5280 18 35572381 to 35572391 10 + TSS region transcription start site region 5280
Gm36989 18 35574907 to 35577066 2159 + unclassified gene predicted gene, 36989
Tssr150536 18 35582789 to 35582811 22 + TSS region transcription start site region 150536
Tssr150537 18 35584738 to 35584767 29 + TSS region transcription start site region 150537
Cpgi9837 18 35598377 to 35599301 924 CpG island CpG island 9837
Tssr150538 18 35598607 to 35598653 46 + TSS region transcription start site region 150538
Paip2 18 35598641 to 35617185 18544 + protein coding gene polyadenylate-binding protein-interacting protein 2
Tssr150539 18 35598654 to 35598672 18 + TSS region transcription start site region 150539
Tssr150540 18 35598687 to 35598698 11 + TSS region transcription start site region 150540
Tssr150541 18 35599198 to 35599215 17 + TSS region transcription start site region 150541
Tssr150542 18 35599219 to 35599269 50 + TSS region transcription start site region 150542
Tssr150543 18 35601001 to 35601005 4 + TSS region transcription start site region 150543
Tssr150544 18 35607931 to 35607935 4 + TSS region transcription start site region 150544
Tssr150545 18 35609054 to 35609060 6 + TSS region transcription start site region 150545
D18Ertd665e 18 35613576 to 35613787 211 DNA segment DNA segment, Chr 18, ERATO Doi 665, expressed
Slc23a1 18 35614604 to 35627227 12623 - protein coding gene solute carrier family 23 (nucleobase transporters), member 1
Tssr152872 18 35615397 to 35615407 10 - TSS region transcription start site region 152872
Tssr152873 18 35619636 to 35619651 15 - TSS region transcription start site region 152873
Tssr152874 18 35627138 to 35627200 62 - TSS region transcription start site region 152874
Tssr152875 18 35627206 to 35627222 16 - TSS region transcription start site region 152875
Tssr152876 18 35627223 to 35627249 26 - TSS region transcription start site region 152876
Tssr152877 18 35627263 to 35627274 11 - TSS region transcription start site region 152877
Tssr152878 18 35629799 to 35629818 19 - TSS region transcription start site region 152878
Tssr152879 18 35629823 to 35629836 13 - TSS region transcription start site region 152879
Tssr152880 18 35629859 to 35629870 11 - TSS region transcription start site region 152880
Mzb1 18 35647266 to 35649367 2101 - protein coding gene marginal zone B and B1 cell-specific protein 1