Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:35245351-36060199

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
Ctnna1 18 35118912 to 35254775 135863 + protein coding gene catenin (cadherin associated protein), alpha 1
Tssr152866 18 35258982 to 35258985 3 - TSS region transcription start site region 152866
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Tssr152867 18 35343032 to 35343036 4 - TSS region transcription start site region 152867
Tssr5278 18 35438256 to 35438261 5 + TSS region transcription start site region 5278
Cpgi9835 18 35498504 to 35499151 647 CpG island CpG island 9835
Tssr152868 18 35498816 to 35498829 13 - TSS region transcription start site region 152868
Tssr152869 18 35498844 to 35498853 9 - TSS region transcription start site region 152869
Tssr152870 18 35498856 to 35498925 69 - TSS region transcription start site region 152870
Gm41691 18 35502712 to 35517526 14814 - lncRNA gene predicted gene, 41691
Tssr150522 18 35536539 to 35536546 7 + TSS region transcription start site region 150522
Gm5239 18 35536583 to 35536951 368 + pseudogene predicted pseudogene 5239
Gm41692 18 35540859 to 35542689 1830 + lncRNA gene predicted gene, 41692
Tssr150523 18 35553401 to 35553421 20 + TSS region transcription start site region 150523
Snhg4 18 35553410 to 35558316 4906 + lncRNA gene small nucleolar RNA host gene 4
Tssr150524 18 35553436 to 35553445 9 + TSS region transcription start site region 150524
Tssr150525 18 35553583 to 35553596 13 + TSS region transcription start site region 150525
Mir1949 18 35554567 to 35554636 69 + miRNA gene microRNA 1949
Snora74a 18 35557032 to 35557227 195 + snoRNA gene small nucleolar RNA, H/ACA box 74A
Gm49347 18 35557132 to 35557242 110 + miRNA gene predicted gene, 49347
Cpgi9836 18 35561889 to 35563098 1209 CpG island CpG island 9836
Matr3 18 35562158 to 35592045 29887 + protein coding gene matrin 3
Tssr150526 18 35562167 to 35562174 7 + TSS region transcription start site region 150526
Tssr150527 18 35562180 to 35562197 17 + TSS region transcription start site region 150527
Tssr150528 18 35562200 to 35562260 60 + TSS region transcription start site region 150528
Tssr150529 18 35562262 to 35562273 11 + TSS region transcription start site region 150529
Tssr150530 18 35562286 to 35562297 11 + TSS region transcription start site region 150530
Tssr5279 18 35562331 to 35562357 26 + TSS region transcription start site region 5279
Tssr150531 18 35562434 to 35562490 56 + TSS region transcription start site region 150531
Tssr152871 18 35562522 to 35562533 11 - TSS region transcription start site region 152871
Tssr150532 18 35562734 to 35562751 17 + TSS region transcription start site region 150532
Tssr150533 18 35564390 to 35564394 4 + TSS region transcription start site region 150533
Tssr150534 18 35571480 to 35571486 6 + TSS region transcription start site region 150534
Tssr150535 18 35571984 to 35571999 15 + TSS region transcription start site region 150535
Tssr5280 18 35572381 to 35572391 10 + TSS region transcription start site region 5280
Gm36989 18 35574907 to 35577066 2159 + unclassified gene predicted gene, 36989
Tssr150536 18 35582789 to 35582811 22 + TSS region transcription start site region 150536
Tssr150537 18 35584738 to 35584767 29 + TSS region transcription start site region 150537
Cpgi9837 18 35598377 to 35599301 924 CpG island CpG island 9837
Tssr150538 18 35598607 to 35598653 46 + TSS region transcription start site region 150538
Paip2 18 35598641 to 35617185 18544 + protein coding gene polyadenylate-binding protein-interacting protein 2
Tssr150539 18 35598654 to 35598672 18 + TSS region transcription start site region 150539
Tssr150540 18 35598687 to 35598698 11 + TSS region transcription start site region 150540
Tssr150541 18 35599198 to 35599215 17 + TSS region transcription start site region 150541
Tssr150542 18 35599219 to 35599269 50 + TSS region transcription start site region 150542
Tssr150543 18 35601001 to 35601005 4 + TSS region transcription start site region 150543
Tssr150544 18 35607931 to 35607935 4 + TSS region transcription start site region 150544
Tssr150545 18 35609054 to 35609060 6 + TSS region transcription start site region 150545
D18Ertd665e 18 35613576 to 35613787 211 DNA segment DNA segment, Chr 18, ERATO Doi 665, expressed
Slc23a1 18 35614604 to 35627227 12623 - protein coding gene solute carrier family 23 (nucleobase transporters), member 1
Tssr152872 18 35615397 to 35615407 10 - TSS region transcription start site region 152872
Tssr152873 18 35619636 to 35619651 15 - TSS region transcription start site region 152873
Tssr152874 18 35627138 to 35627200 62 - TSS region transcription start site region 152874
Tssr152875 18 35627206 to 35627222 16 - TSS region transcription start site region 152875
Tssr152876 18 35627223 to 35627249 26 - TSS region transcription start site region 152876
Tssr152877 18 35627263 to 35627274 11 - TSS region transcription start site region 152877
Tssr152878 18 35629799 to 35629818 19 - TSS region transcription start site region 152878
Tssr152879 18 35629823 to 35629836 13 - TSS region transcription start site region 152879
Tssr152880 18 35629859 to 35629870 11 - TSS region transcription start site region 152880
Mzb1 18 35647266 to 35649367 2101 - protein coding gene marginal zone B and B1 cell-specific protein 1
Tssr152881 18 35648379 to 35648395 16 - TSS region transcription start site region 152881
Tssr152882 18 35648397 to 35648412 15 - TSS region transcription start site region 152882
Tssr152883 18 35648416 to 35648430 14 - TSS region transcription start site region 152883
Tssr152884 18 35648466 to 35648482 16 - TSS region transcription start site region 152884
Tssr152885 18 35648483 to 35648502 19 - TSS region transcription start site region 152885
Tssr152886 18 35648507 to 35648516 9 - TSS region transcription start site region 152886
Tssr152887 18 35649312 to 35649328 16 - TSS region transcription start site region 152887
Tssr152888 18 35649335 to 35649344 9 - TSS region transcription start site region 152888
Tssr152889 18 35649349 to 35649374 25 - TSS region transcription start site region 152889
Tssr152890 18 35649492 to 35649499 7 - TSS region transcription start site region 152890
Tssr152891 18 35649569 to 35649589 20 - TSS region transcription start site region 152891
Cpgi9838 18 35652132 to 35655564 3432 CpG island CpG island 9838
Prob1 18 35652167 to 35655199 3032 - protein coding gene proline rich basic protein 1
Tssr152892 18 35654341 to 35654349 8 - TSS region transcription start site region 152892
Tssr152893 18 35654888 to 35654903 15 - TSS region transcription start site region 152893
Tssr152894 18 35654938 to 35654950 12 - TSS region transcription start site region 152894
Tssr152895 18 35655172 to 35655181 9 - TSS region transcription start site region 152895
Tssr152896 18 35655185 to 35655199 14 - TSS region transcription start site region 152896
Tssr152897 18 35655202 to 35655240 38 - TSS region transcription start site region 152897
Spata24 18 35656690 to 35662186 5496 - protein coding gene spermatogenesis associated 24
Cpgi9839 18 35661508 to 35662366 858 CpG island CpG island 9839
Tssr152898 18 35662081 to 35662092 11 - TSS region transcription start site region 152898
Tssr152899 18 35662129 to 35662175 46 - TSS region transcription start site region 152899
Tssr152900 18 35662180 to 35662195 15 - TSS region transcription start site region 152900
Dnajc18 18 35671103 to 35703144 32041 - protein coding gene DnaJ heat shock protein family (Hsp40) member C18
Cpgi9840 18 35702675 to 35703392 717 CpG island CpG island 9840
Tssr152901 18 35703070 to 35703081 11 - TSS region transcription start site region 152901
Tssr152902 18 35703084 to 35703099 15 - TSS region transcription start site region 152902
Tssr152903 18 35703108 to 35703133 25 - TSS region transcription start site region 152903
Tssr150546 18 35703212 to 35703221 9 + TSS region transcription start site region 150546
Tssr152904 18 35708388 to 35708406 18 - TSS region transcription start site region 152904
Tssr152905 18 35708415 to 35708422 7 - TSS region transcription start site region 152905
Ecscr 18 35713086 to 35722356 9270 - protein coding gene endothelial cell surface expressed chemotaxis and apoptosis regulator
Tssr152906 18 35722062 to 35722073 11 - TSS region transcription start site region 152906
Tssr152907 18 35722311 to 35722327 16 - TSS region transcription start site region 152907
Tssr152908 18 35722330 to 35722381 51 - TSS region transcription start site region 152908
1700066B19Rik 18 35726727 to 35730869 4142 + protein coding gene RIKEN cDNA 1700066B19 gene
Tssr150547 18 35726862 to 35726888 26 + TSS region transcription start site region 150547
Tssr150548 18 35726975 to 35726994 19 + TSS region transcription start site region 150548
Tssr150549 18 35727019 to 35727039 20 + TSS region transcription start site region 150549
Tmem173 18 35733678 to 35740554 6876 - protein coding gene transmembrane protein 173
Tssr152909 18 35739995 to 35740021 26 - TSS region transcription start site region 152909
Tssr152910 18 35740024 to 35740035 11 - TSS region transcription start site region 152910
Tssr152911 18 35740067 to 35740074 7 - TSS region transcription start site region 152911
Tssr152912 18 35740106 to 35740128 22 - TSS region transcription start site region 152912
Tssr152913 18 35740204 to 35740240 36 - TSS region transcription start site region 152913
Tssr152914 18 35740391 to 35740438 47 - TSS region transcription start site region 152914
Tssr152915 18 35740439 to 35740492 53 - TSS region transcription start site region 152915
Tssr152916 18 35740499 to 35740542 43 - TSS region transcription start site region 152916
Tssr150550 18 35740673 to 35740712 39 + TSS region transcription start site region 150550
D18Ertd511e 18 35746521 to 35746730 209 DNA segment DNA segment, Chr 18, ERATO Doi 511, expressed
Cpgi9841 18 35752016 to 35752459 443 CpG island CpG island 9841
Gm16490 18 35770318 to 35770668 350 + pseudogene predicted gene 16490
Cpgi9842 18 35770989 to 35772493 1504 CpG island CpG island 9842
Tssr150551 18 35771357 to 35771368 11 + TSS region transcription start site region 150551
Tssr150552 18 35771371 to 35771487 116 + TSS region transcription start site region 150552
Tssr150553 18 35771488 to 35771558 70 + TSS region transcription start site region 150553
Ube2d2a 18 35771559 to 35807172 35613 + protein coding gene ubiquitin-conjugating enzyme E2D 2A
Tssr150554 18 35771574 to 35771599 25 + TSS region transcription start site region 150554
Tssr150555 18 35771610 to 35771615 5 + TSS region transcription start site region 150555
Tssr150556 18 35771662 to 35771671 9 + TSS region transcription start site region 150556
Tssr150557 18 35771676 to 35771710 34 + TSS region transcription start site region 150557
Tssr150558 18 35771711 to 35771741 30 + TSS region transcription start site region 150558
Tssr150559 18 35771897 to 35771954 57 + TSS region transcription start site region 150559
Tssr150560 18 35772118 to 35772131 13 + TSS region transcription start site region 150560
Tssr150561 18 35772145 to 35772165 20 + TSS region transcription start site region 150561
Tssr150562 18 35773801 to 35773805 4 + TSS region transcription start site region 150562
Tssr150563 18 35780787 to 35780791 4 + TSS region transcription start site region 150563
Tssr150564 18 35795515 to 35795519 4 + TSS region transcription start site region 150564
Tssr150565 18 35806454 to 35806465 11 + TSS region transcription start site region 150565
Cpgi9843 18 35814732 to 35815085 353 CpG island CpG island 9843
Tssr152917 18 35822865 to 35822875 10 - TSS region transcription start site region 152917
Tssr150566 18 35828798 to 35828815 17 + TSS region transcription start site region 150566
Tssr150567 18 35828853 to 35828868 15 + TSS region transcription start site region 150567
Cpgi9844 18 35829160 to 35831196 2036 CpG island CpG island 9844
Tssr150568 18 35829730 to 35829756 26 + TSS region transcription start site region 150568
Tssr150569 18 35829779 to 35829795 16 + TSS region transcription start site region 150569
Tssr150570 18 35829798 to 35829821 23 + TSS region transcription start site region 150570
Cxxc5 18 35829818 to 35861687 31869 + protein coding gene CXXC finger 5
Tssr150571 18 35829828 to 35829839 11 + TSS region transcription start site region 150571
Tssr150572 18 35829840 to 35829851 11 + TSS region transcription start site region 150572
Tssr150573 18 35830091 to 35830111 20 + TSS region transcription start site region 150573
Tssr152918 18 35830125 to 35830137 12 - TSS region transcription start site region 152918
Tssr150574 18 35830179 to 35830208 29 + TSS region transcription start site region 150574
Tssr150575 18 35830300 to 35830363 63 + TSS region transcription start site region 150575
Gm29417 18 35830389 to 35831093 704 - antisense lncRNA gene predicted gene 29417
Tssr150576 18 35830971 to 35830973 2 + TSS region transcription start site region 150576
Cpgi9845 18 35831298 to 35831495 197 CpG island CpG island 9845
Cpgi9846 18 35831633 to 35832306 673 CpG island CpG island 9846
Cpgi9847 18 35847904 to 35848611 707 CpG island CpG island 9847
Tssr150577 18 35854679 to 35854715 36 + TSS region transcription start site region 150577
Tssr150578 18 35854717 to 35854732 15 + TSS region transcription start site region 150578
Tssr150579 18 35854734 to 35854750 16 + TSS region transcription start site region 150579
Cpgi9848 18 35855571 to 35855856 285 CpG island CpG island 9848
Cpgi9849 18 35858540 to 35858801 261 CpG island CpG island 9849
Tssr150580 18 35858693 to 35858705 12 + TSS region transcription start site region 150580
Cpgi9850 18 35859057 to 35859461 404 CpG island CpG island 9850
Gm41693 18 35871836 to 35877311 5475 + lncRNA gene predicted gene, 41693
Cpgi9851 18 35873218 to 35874055 837 CpG island CpG island 9851
Tssr150581 18 35873502 to 35873505 3 + TSS region transcription start site region 150581
Cpgi9852 18 35878958 to 35879210 252 CpG island CpG island 9852
D18Mit12 18 35885821 to 35885939 118 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 12
Im7 18 35885821 to 35885939 118 QTL immunoregulatory 7
Kcal1 18 35885821 to 35885939 118 QTL kilocalorie 1
Cpgi9853 18 35887541 to 35890399 2858 CpG island CpG island 9853
Tssr150582 18 35888548 to 35888586 38 + TSS region transcription start site region 150582
Gm36315 18 35888769 to 35890859 2090 - lncRNA gene predicted gene, 36315
Tssr150583 18 35889675 to 35889697 22 + TSS region transcription start site region 150583
Tssr152919 18 35889791 to 35889802 11 - TSS region transcription start site region 152919
Tssr150584 18 35910328 to 35910337 9 + TSS region transcription start site region 150584
Tssr152920 18 35910408 to 35910416 8 - TSS region transcription start site region 152920
C330008A17Rik 18 35913131 to 35916771 3640 unclassified gene RIKEN cDNA C330008A17 gene
Cpgi9854 18 35918903 to 35921347 2444 CpG island CpG island 9854
Gm36416 18 35920778 to 35921763 985 - lncRNA gene predicted gene, 36416
Cpgi9855 18 35930251 to 35931054 803 CpG island CpG island 9855
Cpgi9856 18 35932982 to 35933960 978 CpG island CpG island 9856
Tssr152921 18 35938205 to 35938209 4 - TSS region transcription start site region 152921
Cpgi9857 18 35938232 to 35938835 603 CpG island CpG island 9857
Cpgi9858 18 35939470 to 35939976 506 CpG island CpG island 9858
Tssr150585 18 35942369 to 35942409 40 + TSS region transcription start site region 150585
Gm23882 18 35952824 to 35952907 83 + miRNA gene predicted gene, 23882
Gm36461 18 35957292 to 35963582 6290 + lncRNA gene predicted gene, 36461
Cpgi9859 18 35964645 to 35965499 854 CpG island CpG island 9859
Psd2 18 35964830 to 36014715 49885 + protein coding gene pleckstrin and Sec7 domain containing 2
Tssr150586 18 35965009 to 35965023 14 + TSS region transcription start site region 150586
Tssr150587 18 35965036 to 35965087 51 + TSS region transcription start site region 150587
Tssr150588 18 35965088 to 35965110 22 + TSS region transcription start site region 150588
Tssr150589 18 35999335 to 35999358 23 + TSS region transcription start site region 150589
Tssr150590 18 36013317 to 36013327 10 + TSS region transcription start site region 150590
Nrg2 18 36017707 to 36197380 179673 - protein coding gene neuregulin 2
Cpgi9860 18 36017849 to 36018936 1087 CpG island CpG island 9860
D18Mit120 18 36054514 to 36054687 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 120
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27