Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:34958032-35728036

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6724 18 34969662 to 34970841 1179 - pseudogene predicted gene 6724
Gm36037 18 34982669 to 35079510 96841 + lncRNA gene predicted gene, 36037
Gm41690 18 34993627 to 34995566 1939 - lncRNA gene predicted gene, 41690
D18Mit15 18 35006651 to 35006806 155 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 15
Phospq1 18 35006651 to 35006806 155 QTL phospholipid QTL 1
Tssr150505 18 35034096 to 35034134 38 + TSS region transcription start site region 150505
Tssr5277 18 35034140 to 35034149 9 + TSS region transcription start site region 5277
Tssr150506 18 35034174 to 35034191 17 + TSS region transcription start site region 150506
Tssr150507 18 35046651 to 35046680 29 + TSS region transcription start site region 150507
Tssr150508 18 35048293 to 35048294 1 + TSS region transcription start site region 150508
Gm3587 18 35057753 to 35087943 30190 - lncRNA gene predicted gene 3587
Tssr152858 18 35087593 to 35087625 32 - TSS region transcription start site region 152858
Gm46617 18 35117299 to 35118775 1476 - lncRNA gene predicted gene, 46617
Cpgi9834 18 35118376 to 35119759 1383 CpG island CpG island 9834
Tssr152859 18 35118799 to 35118818 19 - TSS region transcription start site region 152859
Tssr150509 18 35118880 to 35118903 23 + TSS region transcription start site region 150509
Tssr150510 18 35118907 to 35118926 19 + TSS region transcription start site region 150510
Ctnna1 18 35118912 to 35254775 135863 + protein coding gene catenin (cadherin associated protein), alpha 1
Tssr150511 18 35118942 to 35118953 11 + TSS region transcription start site region 150511
Tssr150512 18 35119421 to 35119429 8 + TSS region transcription start site region 150512
Tssr150513 18 35119806 to 35119818 12 + TSS region transcription start site region 150513
Tssr150514 18 35119829 to 35119840 11 + TSS region transcription start site region 150514
Tssr150515 18 35120232 to 35120236 4 + TSS region transcription start site region 150515
Tssr150516 18 35130643 to 35130646 3 + TSS region transcription start site region 150516
Tssr152860 18 35130930 to 35130935 5 - TSS region transcription start site region 152860
Tssr150517 18 35141934 to 35141936 2 + TSS region transcription start site region 150517
Tssr150518 18 35154461 to 35154476 15 + TSS region transcription start site region 150518
Lrrtm2 18 35209011 to 35215024 6013 - protein coding gene leucine rich repeat transmembrane neuronal 2
Tssr152861 18 35214912 to 35214934 22 - TSS region transcription start site region 152861
Tssr152862 18 35214943 to 35214969 26 - TSS region transcription start site region 152862
Tssr152863 18 35214980 to 35214992 12 - TSS region transcription start site region 152863
Tssr152864 18 35215008 to 35215033 25 - TSS region transcription start site region 152864
Tssr152865 18 35215043 to 35215067 24 - TSS region transcription start site region 152865
Tssr150519 18 35215076 to 35215130 54 + TSS region transcription start site region 150519
Tssr150520 18 35220849 to 35220852 3 + TSS region transcription start site region 150520
Tssr150521 18 35235499 to 35235517 18 + TSS region transcription start site region 150521
Tssr152866 18 35258982 to 35258985 3 - TSS region transcription start site region 152866
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Tssr152867 18 35343032 to 35343036 4 - TSS region transcription start site region 152867
Tssr5278 18 35438256 to 35438261 5 + TSS region transcription start site region 5278
Cpgi9835 18 35498504 to 35499151 647 CpG island CpG island 9835
Tssr152868 18 35498816 to 35498829 13 - TSS region transcription start site region 152868
Tssr152869 18 35498844 to 35498853 9 - TSS region transcription start site region 152869
Tssr152870 18 35498856 to 35498925 69 - TSS region transcription start site region 152870
Gm41691 18 35502712 to 35517526 14814 - lncRNA gene predicted gene, 41691
Tssr150522 18 35536539 to 35536546 7 + TSS region transcription start site region 150522
Gm5239 18 35536583 to 35536951 368 + pseudogene predicted pseudogene 5239
Gm41692 18 35540859 to 35542689 1830 + lncRNA gene predicted gene, 41692
Tssr150523 18 35553401 to 35553421 20 + TSS region transcription start site region 150523
Snhg4 18 35553410 to 35558316 4906 + lncRNA gene small nucleolar RNA host gene 4
Tssr150524 18 35553436 to 35553445 9 + TSS region transcription start site region 150524
Tssr150525 18 35553583 to 35553596 13 + TSS region transcription start site region 150525
Mir1949 18 35554567 to 35554636 69 + miRNA gene microRNA 1949
Snora74a 18 35557032 to 35557227 195 + snoRNA gene small nucleolar RNA, H/ACA box 74A
Gm49347 18 35557132 to 35557242 110 + miRNA gene predicted gene, 49347
Cpgi9836 18 35561889 to 35563098 1209 CpG island CpG island 9836
Matr3 18 35562158 to 35592045 29887 + protein coding gene matrin 3
Tssr150526 18 35562167 to 35562174 7 + TSS region transcription start site region 150526
Tssr150527 18 35562180 to 35562197 17 + TSS region transcription start site region 150527
Tssr150528 18 35562200 to 35562260 60 + TSS region transcription start site region 150528
Tssr150529 18 35562262 to 35562273 11 + TSS region transcription start site region 150529
Tssr150530 18 35562286 to 35562297 11 + TSS region transcription start site region 150530
Tssr5279 18 35562331 to 35562357 26 + TSS region transcription start site region 5279
Tssr150531 18 35562434 to 35562490 56 + TSS region transcription start site region 150531
Tssr152871 18 35562522 to 35562533 11 - TSS region transcription start site region 152871
Tssr150532 18 35562734 to 35562751 17 + TSS region transcription start site region 150532
Tssr150533 18 35564390 to 35564394 4 + TSS region transcription start site region 150533
Tssr150534 18 35571480 to 35571486 6 + TSS region transcription start site region 150534
Tssr150535 18 35571984 to 35571999 15 + TSS region transcription start site region 150535
Tssr5280 18 35572381 to 35572391 10 + TSS region transcription start site region 5280
Gm36989 18 35574907 to 35577066 2159 + unclassified gene predicted gene, 36989
Tssr150536 18 35582789 to 35582811 22 + TSS region transcription start site region 150536
Tssr150537 18 35584738 to 35584767 29 + TSS region transcription start site region 150537
Cpgi9837 18 35598377 to 35599301 924 CpG island CpG island 9837
Tssr150538 18 35598607 to 35598653 46 + TSS region transcription start site region 150538
Paip2 18 35598641 to 35617185 18544 + protein coding gene polyadenylate-binding protein-interacting protein 2
Tssr150539 18 35598654 to 35598672 18 + TSS region transcription start site region 150539
Tssr150540 18 35598687 to 35598698 11 + TSS region transcription start site region 150540
Tssr150541 18 35599198 to 35599215 17 + TSS region transcription start site region 150541
Tssr150542 18 35599219 to 35599269 50 + TSS region transcription start site region 150542
Tssr150543 18 35601001 to 35601005 4 + TSS region transcription start site region 150543
Tssr150544 18 35607931 to 35607935 4 + TSS region transcription start site region 150544
Tssr150545 18 35609054 to 35609060 6 + TSS region transcription start site region 150545
D18Ertd665e 18 35613576 to 35613787 211 DNA segment DNA segment, Chr 18, ERATO Doi 665, expressed
Slc23a1 18 35614604 to 35627227 12623 - protein coding gene solute carrier family 23 (nucleobase transporters), member 1
Tssr152872 18 35615397 to 35615407 10 - TSS region transcription start site region 152872
Tssr152873 18 35619636 to 35619651 15 - TSS region transcription start site region 152873
Tssr152874 18 35627138 to 35627200 62 - TSS region transcription start site region 152874
Tssr152875 18 35627206 to 35627222 16 - TSS region transcription start site region 152875
Tssr152876 18 35627223 to 35627249 26 - TSS region transcription start site region 152876
Tssr152877 18 35627263 to 35627274 11 - TSS region transcription start site region 152877
Tssr152878 18 35629799 to 35629818 19 - TSS region transcription start site region 152878
Tssr152879 18 35629823 to 35629836 13 - TSS region transcription start site region 152879
Tssr152880 18 35629859 to 35629870 11 - TSS region transcription start site region 152880
Mzb1 18 35647266 to 35649367 2101 - protein coding gene marginal zone B and B1 cell-specific protein 1
Tssr152881 18 35648379 to 35648395 16 - TSS region transcription start site region 152881
Tssr152882 18 35648397 to 35648412 15 - TSS region transcription start site region 152882
Tssr152883 18 35648416 to 35648430 14 - TSS region transcription start site region 152883
Tssr152884 18 35648466 to 35648482 16 - TSS region transcription start site region 152884
Tssr152885 18 35648483 to 35648502 19 - TSS region transcription start site region 152885
Tssr152886 18 35648507 to 35648516 9 - TSS region transcription start site region 152886
Tssr152887 18 35649312 to 35649328 16 - TSS region transcription start site region 152887
Tssr152888 18 35649335 to 35649344 9 - TSS region transcription start site region 152888
Tssr152889 18 35649349 to 35649374 25 - TSS region transcription start site region 152889
Tssr152890 18 35649492 to 35649499 7 - TSS region transcription start site region 152890
Tssr152891 18 35649569 to 35649589 20 - TSS region transcription start site region 152891
Cpgi9838 18 35652132 to 35655564 3432 CpG island CpG island 9838
Prob1 18 35652167 to 35655199 3032 - protein coding gene proline rich basic protein 1
Tssr152892 18 35654341 to 35654349 8 - TSS region transcription start site region 152892
Tssr152893 18 35654888 to 35654903 15 - TSS region transcription start site region 152893
Tssr152894 18 35654938 to 35654950 12 - TSS region transcription start site region 152894
Tssr152895 18 35655172 to 35655181 9 - TSS region transcription start site region 152895
Tssr152896 18 35655185 to 35655199 14 - TSS region transcription start site region 152896
Tssr152897 18 35655202 to 35655240 38 - TSS region transcription start site region 152897
Spata24 18 35656690 to 35662186 5496 - protein coding gene spermatogenesis associated 24
Cpgi9839 18 35661508 to 35662366 858 CpG island CpG island 9839
Tssr152898 18 35662081 to 35662092 11 - TSS region transcription start site region 152898
Tssr152899 18 35662129 to 35662175 46 - TSS region transcription start site region 152899
Tssr152900 18 35662180 to 35662195 15 - TSS region transcription start site region 152900
Dnajc18 18 35671103 to 35703144 32041 - protein coding gene DnaJ heat shock protein family (Hsp40) member C18
Cpgi9840 18 35702675 to 35703392 717 CpG island CpG island 9840
Tssr152901 18 35703070 to 35703081 11 - TSS region transcription start site region 152901
Tssr152902 18 35703084 to 35703099 15 - TSS region transcription start site region 152902
Tssr152903 18 35703108 to 35703133 25 - TSS region transcription start site region 152903
Tssr150546 18 35703212 to 35703221 9 + TSS region transcription start site region 150546
Tssr152904 18 35708388 to 35708406 18 - TSS region transcription start site region 152904
Tssr152905 18 35708415 to 35708422 7 - TSS region transcription start site region 152905
Ecscr 18 35713086 to 35722356 9270 - protein coding gene endothelial cell surface expressed chemotaxis and apoptosis regulator
Tssr152906 18 35722062 to 35722073 11 - TSS region transcription start site region 152906
Tssr152907 18 35722311 to 35722327 16 - TSS region transcription start site region 152907
Tssr152908 18 35722330 to 35722381 51 - TSS region transcription start site region 152908
1700066B19Rik 18 35726727 to 35730869 4142 + protein coding gene RIKEN cDNA 1700066B19 gene
Tssr150547 18 35726862 to 35726888 26 + TSS region transcription start site region 150547
Tssr150548 18 35726975 to 35726994 19 + TSS region transcription start site region 150548
Tssr150549 18 35727019 to 35727039 20 + TSS region transcription start site region 150549