Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:34953982-35563985

Filter by:
73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hspa9 18 34937423 to 34954351 16928 - protein coding gene heat shock protein 9
Cpgi9833 18 34953881 to 34955186 1305 CpG island CpG island 9833
Tssr152854 18 34954255 to 34954266 11 - TSS region transcription start site region 152854
Tssr152855 18 34954276 to 34954287 11 - TSS region transcription start site region 152855
Tssr152856 18 34954302 to 34954359 57 - TSS region transcription start site region 152856
Tssr5276 18 34954654 to 34954690 36 + TSS region transcription start site region 5276
Tssr152857 18 34954667 to 34954697 30 - TSS region transcription start site region 152857
Gm6724 18 34969662 to 34970841 1179 - pseudogene predicted gene 6724
Gm36037 18 34982669 to 35079510 96841 + lncRNA gene predicted gene, 36037
Gm41690 18 34993627 to 34995566 1939 - lncRNA gene predicted gene, 41690
D18Mit15 18 35006651 to 35006806 155 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 15
Phospq1 18 35006651 to 35006806 155 QTL phospholipid QTL 1
Tssr150505 18 35034096 to 35034134 38 + TSS region transcription start site region 150505
Tssr5277 18 35034140 to 35034149 9 + TSS region transcription start site region 5277
Tssr150506 18 35034174 to 35034191 17 + TSS region transcription start site region 150506
Tssr150507 18 35046651 to 35046680 29 + TSS region transcription start site region 150507
Tssr150508 18 35048293 to 35048294 1 + TSS region transcription start site region 150508
Gm3587 18 35057753 to 35087943 30190 - lncRNA gene predicted gene 3587
Tssr152858 18 35087593 to 35087625 32 - TSS region transcription start site region 152858
Gm46617 18 35117299 to 35118775 1476 - lncRNA gene predicted gene, 46617
Cpgi9834 18 35118376 to 35119759 1383 CpG island CpG island 9834
Tssr152859 18 35118799 to 35118818 19 - TSS region transcription start site region 152859
Tssr150509 18 35118880 to 35118903 23 + TSS region transcription start site region 150509
Tssr150510 18 35118907 to 35118926 19 + TSS region transcription start site region 150510
Ctnna1 18 35118912 to 35254775 135863 + protein coding gene catenin (cadherin associated protein), alpha 1
Tssr150511 18 35118942 to 35118953 11 + TSS region transcription start site region 150511
Tssr150512 18 35119421 to 35119429 8 + TSS region transcription start site region 150512
Tssr150513 18 35119806 to 35119818 12 + TSS region transcription start site region 150513
Tssr150514 18 35119829 to 35119840 11 + TSS region transcription start site region 150514
Tssr150515 18 35120232 to 35120236 4 + TSS region transcription start site region 150515
Tssr150516 18 35130643 to 35130646 3 + TSS region transcription start site region 150516
Tssr152860 18 35130930 to 35130935 5 - TSS region transcription start site region 152860
Tssr150517 18 35141934 to 35141936 2 + TSS region transcription start site region 150517
Tssr150518 18 35154461 to 35154476 15 + TSS region transcription start site region 150518
Lrrtm2 18 35209011 to 35215024 6013 - protein coding gene leucine rich repeat transmembrane neuronal 2
Tssr152861 18 35214912 to 35214934 22 - TSS region transcription start site region 152861
Tssr152862 18 35214943 to 35214969 26 - TSS region transcription start site region 152862
Tssr152863 18 35214980 to 35214992 12 - TSS region transcription start site region 152863
Tssr152864 18 35215008 to 35215033 25 - TSS region transcription start site region 152864
Tssr152865 18 35215043 to 35215067 24 - TSS region transcription start site region 152865
Tssr150519 18 35215076 to 35215130 54 + TSS region transcription start site region 150519
Tssr150520 18 35220849 to 35220852 3 + TSS region transcription start site region 150520
Tssr150521 18 35235499 to 35235517 18 + TSS region transcription start site region 150521
Tssr152866 18 35258982 to 35258985 3 - TSS region transcription start site region 152866
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Tssr152867 18 35343032 to 35343036 4 - TSS region transcription start site region 152867
Tssr5278 18 35438256 to 35438261 5 + TSS region transcription start site region 5278
Cpgi9835 18 35498504 to 35499151 647 CpG island CpG island 9835
Tssr152868 18 35498816 to 35498829 13 - TSS region transcription start site region 152868
Tssr152869 18 35498844 to 35498853 9 - TSS region transcription start site region 152869
Tssr152870 18 35498856 to 35498925 69 - TSS region transcription start site region 152870
Gm41691 18 35502712 to 35517526 14814 - lncRNA gene predicted gene, 41691
Tssr150522 18 35536539 to 35536546 7 + TSS region transcription start site region 150522
Gm5239 18 35536583 to 35536951 368 + pseudogene predicted pseudogene 5239
Gm41692 18 35540859 to 35542689 1830 + lncRNA gene predicted gene, 41692
Tssr150523 18 35553401 to 35553421 20 + TSS region transcription start site region 150523
Snhg4 18 35553410 to 35558316 4906 + lncRNA gene small nucleolar RNA host gene 4
Tssr150524 18 35553436 to 35553445 9 + TSS region transcription start site region 150524
Tssr150525 18 35553583 to 35553596 13 + TSS region transcription start site region 150525
Mir1949 18 35554567 to 35554636 69 + miRNA gene microRNA 1949
Snora74a 18 35557032 to 35557227 195 + snoRNA gene small nucleolar RNA, H/ACA box 74A
Gm49347 18 35557132 to 35557242 110 + miRNA gene predicted gene, 49347
Cpgi9836 18 35561889 to 35563098 1209 CpG island CpG island 9836
Matr3 18 35562158 to 35592045 29887 + protein coding gene matrin 3
Tssr150526 18 35562167 to 35562174 7 + TSS region transcription start site region 150526
Tssr150527 18 35562180 to 35562197 17 + TSS region transcription start site region 150527
Tssr150528 18 35562200 to 35562260 60 + TSS region transcription start site region 150528
Tssr150529 18 35562262 to 35562273 11 + TSS region transcription start site region 150529
Tssr150530 18 35562286 to 35562297 11 + TSS region transcription start site region 150530
Tssr5279 18 35562331 to 35562357 26 + TSS region transcription start site region 5279
Tssr150531 18 35562434 to 35562490 56 + TSS region transcription start site region 150531
Tssr152871 18 35562522 to 35562533 11 - TSS region transcription start site region 152871
Tssr150532 18 35562734 to 35562751 17 + TSS region transcription start site region 150532