Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:34933912-35439775

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hspa9 18 34937423 to 34954351 16928 - protein coding gene heat shock protein 9
Tssr152848 18 34940236 to 34940247 11 - TSS region transcription start site region 152848
Tssr152849 18 34940881 to 34940894 13 - TSS region transcription start site region 152849
Gm22200 18 34941234 to 34941300 66 - snoRNA gene predicted gene, 22200
Tssr152850 18 34941899 to 34941922 23 - TSS region transcription start site region 152850
Gm26109 18 34942644 to 34942713 69 - snoRNA gene predicted gene, 26109
Tssr152851 18 34946541 to 34946556 15 - TSS region transcription start site region 152851
Tssr152852 18 34947971 to 34948020 49 - TSS region transcription start site region 152852
D330004O07Rik 18 34949568 to 34951222 1654 unclassified gene RIKEN cDNA D330004O07 gene
Cpgi9833 18 34953881 to 34955186 1305 CpG island CpG island 9833
Tssr152853 18 34953930 to 34953939 9 - TSS region transcription start site region 152853
Tssr152854 18 34954255 to 34954266 11 - TSS region transcription start site region 152854
Tssr152855 18 34954276 to 34954287 11 - TSS region transcription start site region 152855
Tssr152856 18 34954302 to 34954359 57 - TSS region transcription start site region 152856
Tssr5276 18 34954654 to 34954690 36 + TSS region transcription start site region 5276
Tssr152857 18 34954667 to 34954697 30 - TSS region transcription start site region 152857
Gm6724 18 34969662 to 34970841 1179 - pseudogene predicted gene 6724
Gm36037 18 34982669 to 35079510 96841 + lncRNA gene predicted gene, 36037
Gm41690 18 34993627 to 34995566 1939 - lncRNA gene predicted gene, 41690
Phospq1 18 35006651 to 35006806 155 QTL phospholipid QTL 1
D18Mit15 18 35006651 to 35006806 155 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 15
Tssr150505 18 35034096 to 35034134 38 + TSS region transcription start site region 150505
Tssr5277 18 35034140 to 35034149 9 + TSS region transcription start site region 5277
Tssr150506 18 35034174 to 35034191 17 + TSS region transcription start site region 150506
Tssr150507 18 35046651 to 35046680 29 + TSS region transcription start site region 150507
Tssr150508 18 35048293 to 35048294 1 + TSS region transcription start site region 150508
Gm3587 18 35057753 to 35087943 30190 - lncRNA gene predicted gene 3587
Tssr152858 18 35087593 to 35087625 32 - TSS region transcription start site region 152858
Gm46617 18 35117299 to 35118775 1476 - lncRNA gene predicted gene, 46617
Cpgi9834 18 35118376 to 35119759 1383 CpG island CpG island 9834
Tssr152859 18 35118799 to 35118818 19 - TSS region transcription start site region 152859
Tssr150509 18 35118880 to 35118903 23 + TSS region transcription start site region 150509
Tssr150510 18 35118907 to 35118926 19 + TSS region transcription start site region 150510
Ctnna1 18 35118912 to 35254775 135863 + protein coding gene catenin (cadherin associated protein), alpha 1
Tssr150511 18 35118942 to 35118953 11 + TSS region transcription start site region 150511
Tssr150512 18 35119421 to 35119429 8 + TSS region transcription start site region 150512
Tssr150513 18 35119806 to 35119818 12 + TSS region transcription start site region 150513
Tssr150514 18 35119829 to 35119840 11 + TSS region transcription start site region 150514
Tssr150515 18 35120232 to 35120236 4 + TSS region transcription start site region 150515
Tssr150516 18 35130643 to 35130646 3 + TSS region transcription start site region 150516
Tssr152860 18 35130930 to 35130935 5 - TSS region transcription start site region 152860
Tssr150517 18 35141934 to 35141936 2 + TSS region transcription start site region 150517
Tssr150518 18 35154461 to 35154476 15 + TSS region transcription start site region 150518
Lrrtm2 18 35209011 to 35215024 6013 - protein coding gene leucine rich repeat transmembrane neuronal 2
Tssr152861 18 35214912 to 35214934 22 - TSS region transcription start site region 152861
Tssr152862 18 35214943 to 35214969 26 - TSS region transcription start site region 152862
Tssr152863 18 35214980 to 35214992 12 - TSS region transcription start site region 152863
Tssr152864 18 35215008 to 35215033 25 - TSS region transcription start site region 152864
Tssr152865 18 35215043 to 35215067 24 - TSS region transcription start site region 152865
Tssr150519 18 35215076 to 35215130 54 + TSS region transcription start site region 150519
Tssr150520 18 35220849 to 35220852 3 + TSS region transcription start site region 150520
Tssr150521 18 35235499 to 35235517 18 + TSS region transcription start site region 150521
Tssr152866 18 35258982 to 35258985 3 - TSS region transcription start site region 152866
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Tssr152867 18 35343032 to 35343036 4 - TSS region transcription start site region 152867
Tssr5278 18 35438256 to 35438261 5 + TSS region transcription start site region 5278