Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:3480884-4850894

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm50089 18 3484218 to 3485193 975 + pseudogene predicted gene, 50089
Cpgi9662 18 3498978 to 3499341 363 CpG island CpG island 9662
Cpgi9663 18 3507142 to 3508651 1509 CpG island CpG island 9663
Tssr152309 18 3507810 to 3507817 7 - TSS region transcription start site region 152309
Tssr149895 18 3507917 to 3507943 26 + TSS region transcription start site region 149895
Tssr149896 18 3507945 to 3507964 19 + TSS region transcription start site region 149896
Bambi 18 3507957 to 3516404 8447 + protein coding gene BMP and activin membrane-bound inhibitor
Tssr149897 18 3507981 to 3507992 11 + TSS region transcription start site region 149897
Tssr149898 18 3508002 to 3508014 12 + TSS region transcription start site region 149898
Tssr5236 18 3531896 to 3531902 6 + TSS region transcription start site region 5236
Tssr149899 18 3542487 to 3542504 17 + TSS region transcription start site region 149899
Gm50090 18 3558675 to 3560037 1362 + pseudogene predicted gene, 50090
Gm50091 18 3616281 to 3618242 1961 + unclassified gene predicted gene, 50091
Cpgi9664 18 3638878 to 3639145 267 CpG island CpG island 9664
D18Mit65 18 3729005 to 3729146 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 65
Gm23643 18 3770741 to 3770804 63 - snRNA gene predicted gene, 23643
D18Mit66 18 3840944 to 3841103 159 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 66
Rpl7a-ps6 18 3857769 to 3858580 811 - pseudogene ribosomal protein L7A, pseudogene 6
Gm24632 18 3860108 to 3860430 322 + unclassified non-coding RNA gene predicted gene, 24632
Cpgi9665 18 3864092 to 3864357 265 CpG island CpG island 9665
Gm7378 18 4010256 to 4011157 901 + pseudogene predicted gene 7378
Gm6248 18 4052351 to 4052536 185 - pseudogene predicted gene 6248
D18Dcr5 18 4111252 to 4111347 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 5
Lyzl1 18 4165832 to 4182232 16400 + protein coding gene lysozyme-like 1
Tssr149900 18 4165837 to 4165850 13 + TSS region transcription start site region 149900
Tssr149901 18 4165856 to 4165868 12 + TSS region transcription start site region 149901
Tssr149902 18 4165884 to 4165894 10 + TSS region transcription start site region 149902
Gm10557 18 4198320 to 4198938 618 - pseudogene predicted gene 10557
Tssr152310 18 4198515 to 4198541 26 - TSS region transcription start site region 152310
Tssr152311 18 4239211 to 4239220 9 - TSS region transcription start site region 152311
Tssr152312 18 4239248 to 4239254 6 - TSS region transcription start site region 152312
Gm41657 18 4244121 to 4250779 6658 - lncRNA gene predicted gene, 41657
Gm7400 18 4293099 to 4294482 1383 - pseudogene predicted gene 7400
Tssr149903 18 4322668 to 4322671 3 + TSS region transcription start site region 149903
Map3k8 18 4331327 to 4353015 21688 - protein coding gene mitogen-activated protein kinase kinase kinase 8
Tssr152313 18 4336289 to 4336298 9 - TSS region transcription start site region 152313
Cpgi9666 18 4352815 to 4353669 854 CpG island CpG island 9666
Tssr152314 18 4352916 to 4352923 7 - TSS region transcription start site region 152314
Tssr152315 18 4352944 to 4352962 18 - TSS region transcription start site region 152315
Tssr149904 18 4353061 to 4353072 11 + TSS region transcription start site region 149904
Tssr152316 18 4353226 to 4353238 12 - TSS region transcription start site region 152316
Tssr152317 18 4353245 to 4353256 11 - TSS region transcription start site region 152317
Tssr152318 18 4353282 to 4353330 48 - TSS region transcription start site region 152318
Tssr152319 18 4353335 to 4353352 17 - TSS region transcription start site region 152319
Tssr152320 18 4353412 to 4353431 19 - TSS region transcription start site region 152320
Tssr149905 18 4353537 to 4353554 17 + TSS region transcription start site region 149905
4833419F23Rik 18 4353558 to 4368920 15362 + lncRNA gene RIKEN cDNA 4833419F23 gene
Tssr149906 18 4353581 to 4353592 11 + TSS region transcription start site region 149906
Tssr149907 18 4353608 to 4353631 23 + TSS region transcription start site region 149907
Gm50096 18 4353644 to 4380723 27079 + unclassified gene predicted gene, 50096
Tssr149908 18 4366923 to 4366934 11 + TSS region transcription start site region 149908
Gm26865 18 4373669 to 4379985 6316 - lincRNA gene predicted gene, 26865
Cpgi9667 18 4375471 to 4376173 702 CpG island CpG island 9667
Tssr149909 18 4375583 to 4375623 40 + TSS region transcription start site region 149909
Mtpap 18 4375592 to 4397330 21738 + protein coding gene mitochondrial poly(A) polymerase
Tssr149910 18 4396775 to 4396781 6 + TSS region transcription start site region 149910
Gm50023 18 4399328 to 4400910 1582 + lincRNA gene predicted gene, 50023
Gm7411 18 4484506 to 4485501 995 + pseudogene predicted gene 7411
Tssr149911 18 4484717 to 4484727 10 + TSS region transcription start site region 149911
Gm41658 18 4541612 to 4562599 20987 - lncRNA gene predicted gene, 41658
Tssr149912 18 4563123 to 4563130 7 + TSS region transcription start site region 149912
Tssr149913 18 4590731 to 4590759 28 + TSS region transcription start site region 149913
Gm50024 18 4590763 to 4616064 25301 + lincRNA gene predicted gene, 50024
Cpgi9668 18 4634414 to 4635768 1354 CpG island CpG island 9668
Jcad 18 4634878 to 4682869 47991 + protein coding gene junctional cadherin 5 associated
Tssr149914 18 4634912 to 4634974 62 + TSS region transcription start site region 149914
Tssr149915 18 4634977 to 4634990 13 + TSS region transcription start site region 149915
Tssr149916 18 4636532 to 4636553 21 + TSS region transcription start site region 149916
Tssr149917 18 4743053 to 4743061 8 + TSS region transcription start site region 149917
Gm5047 18 4743076 to 4743876 800 + pseudogene predicted gene 5047
Gm10556 18 4812486 to 4850959 38473 + lincRNA gene predicted gene 10556
Gm34269 18 4820303 to 4826659 6356 - lncRNA gene predicted gene, 34269