Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:34773514-40173532

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1064 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
Fam53c 18 34758906 to 34773760 14854 + protein coding gene family with sequence similarity 53, member C
Tssr150478 18 34776203 to 34776207 4 + TSS region transcription start site region 150478
Cpgi9828 18 34776411 to 34777830 1419 CpG island CpG island 9828
Tssr150479 18 34777012 to 34777075 63 + TSS region transcription start site region 150479
Kdm3b 18 34777047 to 34838660 61613 + protein coding gene KDM3B lysine (K)-specific demethylase 3B
Tssr150480 18 34777590 to 34777646 56 + TSS region transcription start site region 150480
Tssr150481 18 34777847 to 34777863 16 + TSS region transcription start site region 150481
Gm26538 18 34796895 to 34803484 6589 - lincRNA gene predicted gene, 26538
Cpgi9829 18 34840391 to 34840875 484 CpG island CpG island 9829
Tssr150482 18 34840575 to 34840586 11 + TSS region transcription start site region 150482
Reep2 18 34840589 to 34847463 6874 + protein coding gene receptor accessory protein 2
Tssr150483 18 34840600 to 34840614 14 + TSS region transcription start site region 150483
Tssr150484 18 34840618 to 34840706 88 + TSS region transcription start site region 150484
Gm41689 18 34849123 to 34850988 1865 + lncRNA gene predicted gene, 41689
D18Mit70 18 34849194 to 34849302 108 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 70
Tssr150485 18 34855562 to 34855601 39 + TSS region transcription start site region 150485
Tssr152830 18 34856222 to 34856241 19 - TSS region transcription start site region 152830
Tssr150486 18 34856531 to 34856545 14 + TSS region transcription start site region 150486
Cpgi9830 18 34859799 to 34862800 3001 CpG island CpG island 9830
Tssr152831 18 34860421 to 34860426 5 - TSS region transcription start site region 152831
Tssr150487 18 34860961 to 34860987 26 + TSS region transcription start site region 150487
Tssr150488 18 34861200 to 34861215 15 + TSS region transcription start site region 150488
Egr1 18 34861207 to 34864956 3749 + protein coding gene early growth response 1
Tssr152832 18 34861427 to 34861441 14 - TSS region transcription start site region 152832
Tssr150489 18 34862470 to 34862481 11 + TSS region transcription start site region 150489
Tssr150490 18 34862496 to 34862521 25 + TSS region transcription start site region 150490
Tssr150491 18 34862524 to 34862570 46 + TSS region transcription start site region 150491
Tssr150492 18 34862596 to 34862616 20 + TSS region transcription start site region 150492
Tssr150493 18 34862673 to 34862698 25 + TSS region transcription start site region 150493
Tssr152833 18 34862707 to 34862721 14 - TSS region transcription start site region 152833
Tssr152834 18 34862766 to 34862814 48 - TSS region transcription start site region 152834
Tssr150494 18 34862929 to 34862965 36 + TSS region transcription start site region 150494
Tssr150495 18 34862983 to 34863019 36 + TSS region transcription start site region 150495
Tssr150496 18 34863056 to 34863088 32 + TSS region transcription start site region 150496
Tssr150497 18 34863248 to 34863259 11 + TSS region transcription start site region 150497
Tssr150498 18 34863360 to 34863376 16 + TSS region transcription start site region 150498
Tssr150499 18 34863494 to 34863505 11 + TSS region transcription start site region 150499
Tssr150500 18 34864350 to 34864361 11 + TSS region transcription start site region 150500
Tssr150501 18 34864655 to 34864665 10 + TSS region transcription start site region 150501
Tssr152835 18 34886663 to 34886668 5 - TSS region transcription start site region 152835
Cpgi9831 18 34887055 to 34887988 933 CpG island CpG island 9831
Tssr152836 18 34887334 to 34887339 5 - TSS region transcription start site region 152836
Tssr152837 18 34887362 to 34887394 32 - TSS region transcription start site region 152837
Tssr150502 18 34887519 to 34887524 5 + TSS region transcription start site region 150502
Etf1 18 34902785 to 34932003 29218 - protein coding gene eukaryotic translation termination factor 1
D6Ertd109e 18 34904142 to 34904360 218 DNA segment DNA segment, Chr 6, ERATO Doi 109, expressed
Tssr152838 18 34908137 to 34908150 13 - TSS region transcription start site region 152838
Tssr152839 18 34924901 to 34924918 17 - TSS region transcription start site region 152839
Cpgi9832 18 34931167 to 34932665 1498 CpG island CpG island 9832
Tssr152840 18 34931664 to 34931671 7 - TSS region transcription start site region 152840
Tssr152841 18 34931798 to 34931812 14 - TSS region transcription start site region 152841
Tssr152842 18 34931891 to 34931920 29 - TSS region transcription start site region 152842
Tssr152843 18 34931931 to 34931985 54 - TSS region transcription start site region 152843
Tssr152844 18 34931993 to 34932004 11 - TSS region transcription start site region 152844
Tssr152845 18 34932005 to 34932009 4 - TSS region transcription start site region 152845
Tssr152846 18 34932016 to 34932020 4 - TSS region transcription start site region 152846
Tssr150503 18 34932160 to 34932179 19 + TSS region transcription start site region 150503
Tssr150504 18 34932289 to 34932312 23 + TSS region transcription start site region 150504
Tssr152847 18 34932584 to 34932608 24 - TSS region transcription start site region 152847
Hspa9 18 34937423 to 34954351 16928 - protein coding gene heat shock protein 9
Tssr152848 18 34940236 to 34940247 11 - TSS region transcription start site region 152848
Tssr152849 18 34940881 to 34940894 13 - TSS region transcription start site region 152849
Gm22200 18 34941234 to 34941300 66 - snoRNA gene predicted gene, 22200
Tssr152850 18 34941899 to 34941922 23 - TSS region transcription start site region 152850
Gm26109 18 34942644 to 34942713 69 - snoRNA gene predicted gene, 26109
Tssr152851 18 34946541 to 34946556 15 - TSS region transcription start site region 152851
Tssr152852 18 34947971 to 34948020 49 - TSS region transcription start site region 152852
D330004O07Rik 18 34949568 to 34951222 1654 unclassified gene RIKEN cDNA D330004O07 gene
Cpgi9833 18 34953881 to 34955186 1305 CpG island CpG island 9833
Tssr152853 18 34953930 to 34953939 9 - TSS region transcription start site region 152853
Tssr152854 18 34954255 to 34954266 11 - TSS region transcription start site region 152854
Tssr152855 18 34954276 to 34954287 11 - TSS region transcription start site region 152855
Tssr152856 18 34954302 to 34954359 57 - TSS region transcription start site region 152856
Tssr5276 18 34954654 to 34954690 36 + TSS region transcription start site region 5276
Tssr152857 18 34954667 to 34954697 30 - TSS region transcription start site region 152857
Gm6724 18 34969662 to 34970841 1179 - pseudogene predicted gene 6724
Gm36037 18 34982669 to 35079510 96841 + lncRNA gene predicted gene, 36037
Gm41690 18 34993627 to 34995566 1939 - lncRNA gene predicted gene, 41690
D18Mit15 18 35006651 to 35006806 155 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 15
Phospq1 18 35006651 to 35006806 155 QTL phospholipid QTL 1
Tssr150505 18 35034096 to 35034134 38 + TSS region transcription start site region 150505
Tssr5277 18 35034140 to 35034149 9 + TSS region transcription start site region 5277
Tssr150506 18 35034174 to 35034191 17 + TSS region transcription start site region 150506
Tssr150507 18 35046651 to 35046680 29 + TSS region transcription start site region 150507
Tssr150508 18 35048293 to 35048294 1 + TSS region transcription start site region 150508
Gm3587 18 35057753 to 35087943 30190 - lncRNA gene predicted gene 3587
Tssr152858 18 35087593 to 35087625 32 - TSS region transcription start site region 152858
Gm46617 18 35117299 to 35118775 1476 - lncRNA gene predicted gene, 46617
Cpgi9834 18 35118376 to 35119759 1383 CpG island CpG island 9834
Tssr152859 18 35118799 to 35118818 19 - TSS region transcription start site region 152859
Tssr150509 18 35118880 to 35118903 23 + TSS region transcription start site region 150509
Tssr150510 18 35118907 to 35118926 19 + TSS region transcription start site region 150510
Ctnna1 18 35118912 to 35254775 135863 + protein coding gene catenin (cadherin associated protein), alpha 1
Tssr150511 18 35118942 to 35118953 11 + TSS region transcription start site region 150511
Tssr150512 18 35119421 to 35119429 8 + TSS region transcription start site region 150512
Tssr150513 18 35119806 to 35119818 12 + TSS region transcription start site region 150513
Tssr150514 18 35119829 to 35119840 11 + TSS region transcription start site region 150514
Tssr150515 18 35120232 to 35120236 4 + TSS region transcription start site region 150515
Tssr150516 18 35130643 to 35130646 3 + TSS region transcription start site region 150516
Tssr152860 18 35130930 to 35130935 5 - TSS region transcription start site region 152860
Tssr150517 18 35141934 to 35141936 2 + TSS region transcription start site region 150517
Tssr150518 18 35154461 to 35154476 15 + TSS region transcription start site region 150518
Lrrtm2 18 35209011 to 35215024 6013 - protein coding gene leucine rich repeat transmembrane neuronal 2
Tssr152861 18 35214912 to 35214934 22 - TSS region transcription start site region 152861
Tssr152862 18 35214943 to 35214969 26 - TSS region transcription start site region 152862
Tssr152863 18 35214980 to 35214992 12 - TSS region transcription start site region 152863
Tssr152864 18 35215008 to 35215033 25 - TSS region transcription start site region 152864
Tssr152865 18 35215043 to 35215067 24 - TSS region transcription start site region 152865
Tssr150519 18 35215076 to 35215130 54 + TSS region transcription start site region 150519
Tssr150520 18 35220849 to 35220852 3 + TSS region transcription start site region 150520
Tssr150521 18 35235499 to 35235517 18 + TSS region transcription start site region 150521
Tssr152866 18 35258982 to 35258985 3 - TSS region transcription start site region 152866
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Tssr152867 18 35343032 to 35343036 4 - TSS region transcription start site region 152867
Tssr5278 18 35438256 to 35438261 5 + TSS region transcription start site region 5278
Cpgi9835 18 35498504 to 35499151 647 CpG island CpG island 9835
Tssr152868 18 35498816 to 35498829 13 - TSS region transcription start site region 152868
Tssr152869 18 35498844 to 35498853 9 - TSS region transcription start site region 152869
Tssr152870 18 35498856 to 35498925 69 - TSS region transcription start site region 152870
Gm41691 18 35502712 to 35517526 14814 - lncRNA gene predicted gene, 41691
Tssr150522 18 35536539 to 35536546 7 + TSS region transcription start site region 150522
Gm5239 18 35536583 to 35536951 368 + pseudogene predicted pseudogene 5239
Gm41692 18 35540859 to 35542689 1830 + lncRNA gene predicted gene, 41692
Tssr150523 18 35553401 to 35553421 20 + TSS region transcription start site region 150523
Snhg4 18 35553410 to 35558316 4906 + lncRNA gene small nucleolar RNA host gene 4
Tssr150524 18 35553436 to 35553445 9 + TSS region transcription start site region 150524
Tssr150525 18 35553583 to 35553596 13 + TSS region transcription start site region 150525
Mir1949 18 35554567 to 35554636 69 + miRNA gene microRNA 1949
Snora74a 18 35557032 to 35557227 195 + snoRNA gene small nucleolar RNA, H/ACA box 74A
Gm49347 18 35557132 to 35557242 110 + miRNA gene predicted gene, 49347
Cpgi9836 18 35561889 to 35563098 1209 CpG island CpG island 9836
Matr3 18 35562158 to 35592045 29887 + protein coding gene matrin 3
Tssr150526 18 35562167 to 35562174 7 + TSS region transcription start site region 150526
Tssr150527 18 35562180 to 35562197 17 + TSS region transcription start site region 150527
Tssr150528 18 35562200 to 35562260 60 + TSS region transcription start site region 150528
Tssr150529 18 35562262 to 35562273 11 + TSS region transcription start site region 150529
Tssr150530 18 35562286 to 35562297 11 + TSS region transcription start site region 150530
Tssr5279 18 35562331 to 35562357 26 + TSS region transcription start site region 5279
Tssr150531 18 35562434 to 35562490 56 + TSS region transcription start site region 150531
Tssr152871 18 35562522 to 35562533 11 - TSS region transcription start site region 152871
Tssr150532 18 35562734 to 35562751 17 + TSS region transcription start site region 150532
Tssr150533 18 35564390 to 35564394 4 + TSS region transcription start site region 150533
Tssr150534 18 35571480 to 35571486 6 + TSS region transcription start site region 150534
Tssr150535 18 35571984 to 35571999 15 + TSS region transcription start site region 150535
Tssr5280 18 35572381 to 35572391 10 + TSS region transcription start site region 5280
Gm36989 18 35574907 to 35577066 2159 + unclassified gene predicted gene, 36989
Tssr150536 18 35582789 to 35582811 22 + TSS region transcription start site region 150536
Tssr150537 18 35584738 to 35584767 29 + TSS region transcription start site region 150537
Cpgi9837 18 35598377 to 35599301 924 CpG island CpG island 9837
Tssr150538 18 35598607 to 35598653 46 + TSS region transcription start site region 150538
Paip2 18 35598641 to 35617185 18544 + protein coding gene polyadenylate-binding protein-interacting protein 2
Tssr150539 18 35598654 to 35598672 18 + TSS region transcription start site region 150539
Tssr150540 18 35598687 to 35598698 11 + TSS region transcription start site region 150540
Tssr150541 18 35599198 to 35599215 17 + TSS region transcription start site region 150541
Tssr150542 18 35599219 to 35599269 50 + TSS region transcription start site region 150542
Tssr150543 18 35601001 to 35601005 4 + TSS region transcription start site region 150543
Tssr150544 18 35607931 to 35607935 4 + TSS region transcription start site region 150544
Tssr150545 18 35609054 to 35609060 6 + TSS region transcription start site region 150545
D18Ertd665e 18 35613576 to 35613787 211 DNA segment DNA segment, Chr 18, ERATO Doi 665, expressed
Slc23a1 18 35614604 to 35627227 12623 - protein coding gene solute carrier family 23 (nucleobase transporters), member 1
Tssr152872 18 35615397 to 35615407 10 - TSS region transcription start site region 152872
Tssr152873 18 35619636 to 35619651 15 - TSS region transcription start site region 152873
Tssr152874 18 35627138 to 35627200 62 - TSS region transcription start site region 152874
Tssr152875 18 35627206 to 35627222 16 - TSS region transcription start site region 152875
Tssr152876 18 35627223 to 35627249 26 - TSS region transcription start site region 152876
Tssr152877 18 35627263 to 35627274 11 - TSS region transcription start site region 152877
Tssr152878 18 35629799 to 35629818 19 - TSS region transcription start site region 152878
Tssr152879 18 35629823 to 35629836 13 - TSS region transcription start site region 152879
Tssr152880 18 35629859 to 35629870 11 - TSS region transcription start site region 152880
Mzb1 18 35647266 to 35649367 2101 - protein coding gene marginal zone B and B1 cell-specific protein 1
Tssr152881 18 35648379 to 35648395 16 - TSS region transcription start site region 152881
Tssr152882 18 35648397 to 35648412 15 - TSS region transcription start site region 152882
Tssr152883 18 35648416 to 35648430 14 - TSS region transcription start site region 152883
Tssr152884 18 35648466 to 35648482 16 - TSS region transcription start site region 152884
Tssr152885 18 35648483 to 35648502 19 - TSS region transcription start site region 152885
Tssr152886 18 35648507 to 35648516 9 - TSS region transcription start site region 152886
Tssr152887 18 35649312 to 35649328 16 - TSS region transcription start site region 152887
Tssr152888 18 35649335 to 35649344 9 - TSS region transcription start site region 152888
Tssr152889 18 35649349 to 35649374 25 - TSS region transcription start site region 152889
Tssr152890 18 35649492 to 35649499 7 - TSS region transcription start site region 152890
Tssr152891 18 35649569 to 35649589 20 - TSS region transcription start site region 152891
Cpgi9838 18 35652132 to 35655564 3432 CpG island CpG island 9838
Prob1 18 35652167 to 35655199 3032 - protein coding gene proline rich basic protein 1
Tssr152892 18 35654341 to 35654349 8 - TSS region transcription start site region 152892
Tssr152893 18 35654888 to 35654903 15 - TSS region transcription start site region 152893
Tssr152894 18 35654938 to 35654950 12 - TSS region transcription start site region 152894
Tssr152895 18 35655172 to 35655181 9 - TSS region transcription start site region 152895
Tssr152896 18 35655185 to 35655199 14 - TSS region transcription start site region 152896
Tssr152897 18 35655202 to 35655240 38 - TSS region transcription start site region 152897
Spata24 18 35656690 to 35662186 5496 - protein coding gene spermatogenesis associated 24
Cpgi9839 18 35661508 to 35662366 858 CpG island CpG island 9839
Tssr152898 18 35662081 to 35662092 11 - TSS region transcription start site region 152898
Tssr152899 18 35662129 to 35662175 46 - TSS region transcription start site region 152899
Tssr152900 18 35662180 to 35662195 15 - TSS region transcription start site region 152900
Dnajc18 18 35671103 to 35703144 32041 - protein coding gene DnaJ heat shock protein family (Hsp40) member C18
Cpgi9840 18 35702675 to 35703392 717 CpG island CpG island 9840
Tssr152901 18 35703070 to 35703081 11 - TSS region transcription start site region 152901
Tssr152902 18 35703084 to 35703099 15 - TSS region transcription start site region 152902
Tssr152903 18 35703108 to 35703133 25 - TSS region transcription start site region 152903