Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:34445021-38995026

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1054 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
Fam13b 18 34442352 to 34506823 64471 - protein coding gene family with sequence similarity 13, member B
Tssr152799 18 34481398 to 34481444 46 - TSS region transcription start site region 152799
Tssr152800 18 34491513 to 34491521 8 - TSS region transcription start site region 152800
Cpgi9818 18 34505947 to 34507192 1245 CpG island CpG island 9818
Tssr152801 18 34506664 to 34506684 20 - TSS region transcription start site region 152801
Tssr152802 18 34506741 to 34506768 27 - TSS region transcription start site region 152802
Tssr152803 18 34506788 to 34506877 89 - TSS region transcription start site region 152803
Tssr152804 18 34507332 to 34507348 16 - TSS region transcription start site region 152804
Tssr152805 18 34508163 to 34508198 35 - TSS region transcription start site region 152805
n-R5s24 18 34509737 to 34509853 116 + rRNA gene nuclear encoded rRNA 5S 24
Tssr152806 18 34511968 to 34511999 31 - TSS region transcription start site region 152806
Tssr152807 18 34523028 to 34523050 22 - TSS region transcription start site region 152807
Tssr152808 18 34523058 to 34523071 13 - TSS region transcription start site region 152808
Tssr150463 18 34542223 to 34542226 3 + TSS region transcription start site region 150463
Tssr150464 18 34542320 to 34542335 15 + TSS region transcription start site region 150464
Wnt8a 18 34542328 to 34548061 5733 + protein coding gene wingless-type MMTV integration site family, member 8A
Cpgi9819 18 34542882 to 34543038 156 CpG island CpG island 9819
Cpgi9820 18 34547217 to 34547619 402 CpG island CpG island 9820
Nme5 18 34562634 to 34579115 16481 - protein coding gene NME/NM23 family member 5
Tssr152809 18 34578771 to 34578776 5 - TSS region transcription start site region 152809
Tssr152810 18 34579041 to 34579052 11 - TSS region transcription start site region 152810
Tssr152811 18 34579072 to 34579130 58 - TSS region transcription start site region 152811
4933408B17Rik 18 34579846 to 34597468 17622 - protein coding gene RIKEN cDNA 4933408B17 gene
Tssr152812 18 34595876 to 34595913 37 - TSS region transcription start site region 152812
Brd8 18 34598615 to 34624601 25986 - protein coding gene bromodomain containing 8
Tssr152813 18 34605425 to 34605432 7 - TSS region transcription start site region 152813
Gm41688 18 34611376 to 34612920 1544 - lncRNA gene predicted gene, 41688
Cpgi9821 18 34624084 to 34625222 1138 CpG island CpG island 9821
Tssr152814 18 34624562 to 34624591 29 - TSS region transcription start site region 152814
Tssr5275 18 34624600 to 34624602 2 - TSS region transcription start site region 5275
Tssr150465 18 34624621 to 34624629 8 + TSS region transcription start site region 150465
Kif20a 18 34624624 to 34633265 8641 + protein coding gene kinesin family member 20A
Tssr150466 18 34624634 to 34624662 28 + TSS region transcription start site region 150466
Tssr152815 18 34624772 to 34624815 43 - TSS region transcription start site region 152815
Tssr152816 18 34624822 to 34624844 22 - TSS region transcription start site region 152816
Tssr150467 18 34624955 to 34625000 45 + TSS region transcription start site region 150467
Tssr150468 18 34625009 to 34625031 22 + TSS region transcription start site region 150468
Tssr150469 18 34625042 to 34625053 11 + TSS region transcription start site region 150469
Cdc23 18 34630951 to 34651735 20784 - protein coding gene CDC23 cell division cycle 23
n-R5s25 18 34647400 to 34647518 118 + rRNA gene nuclear encoded rRNA 5S 25
Cpgi9822 18 34651130 to 34651865 735 CpG island CpG island 9822
Tssr152817 18 34651681 to 34651692 11 - TSS region transcription start site region 152817
Tssr152818 18 34651695 to 34651702 7 - TSS region transcription start site region 152818
Tssr152819 18 34651703 to 34651741 38 - TSS region transcription start site region 152819
Tssr152820 18 34651745 to 34651759 14 - TSS region transcription start site region 152820
Tssr152821 18 34652491 to 34652509 18 - TSS region transcription start site region 152821
D18Mit232 18 34667851 to 34667940 89 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 232
Cpgi9823 18 34679636 to 34679902 266 CpG island CpG island 9823
Tssr152822 18 34688815 to 34688819 4 - TSS region transcription start site region 152822
Gfra3 18 34689903 to 34720387 30484 - protein coding gene glial cell line derived neurotrophic factor family receptor alpha 3
Cpgi9824 18 34695581 to 34695851 270 CpG island CpG island 9824
Tssr152823 18 34703856 to 34703863 7 - TSS region transcription start site region 152823
Cpgi9825 18 34720001 to 34720585 584 CpG island CpG island 9825
Tssr152824 18 34720245 to 34720262 17 - TSS region transcription start site region 152824
Tssr152825 18 34720269 to 34720311 42 - TSS region transcription start site region 152825
Cdc25c 18 34732997 to 34751533 18536 - protein coding gene cell division cycle 25C
Gm3550 18 34737368 to 34738014 646 + pseudogene predicted gene 3550
Tssr152826 18 34746889 to 34746890 1 - TSS region transcription start site region 152826
Cpgi9826 18 34751251 to 34752334 1083 CpG island CpG island 9826
Tssr152827 18 34751345 to 34751357 12 - TSS region transcription start site region 152827
Tssr152828 18 34751502 to 34751541 39 - TSS region transcription start site region 152828
Tssr152829 18 34751542 to 34751560 18 - TSS region transcription start site region 152829
Tssr150470 18 34751771 to 34751786 15 + TSS region transcription start site region 150470
Tssr150471 18 34751803 to 34751818 15 + TSS region transcription start site region 150471
2010110K18Rik 18 34753443 to 34758694 5251 + lincRNA gene RIKEN cDNA 2010110K18 gene
Tssr150472 18 34758853 to 34758879 26 + TSS region transcription start site region 150472
Tssr150473 18 34758890 to 34758897 7 + TSS region transcription start site region 150473
Fam53c 18 34758906 to 34773760 14854 + protein coding gene family with sequence similarity 53, member C
Gm3561 18 34758945 to 34761890 2945 - protein coding gene predicted gene 3561
Tssr150474 18 34759100 to 34759112 12 + TSS region transcription start site region 150474
Cpgi9827 18 34759247 to 34759994 747 CpG island CpG island 9827
Tssr150475 18 34759551 to 34759558 7 + TSS region transcription start site region 150475
Tssr150476 18 34762634 to 34762643 9 + TSS region transcription start site region 150476
Tssr150477 18 34768278 to 34768287 9 + TSS region transcription start site region 150477
Tssr150478 18 34776203 to 34776207 4 + TSS region transcription start site region 150478
Cpgi9828 18 34776411 to 34777830 1419 CpG island CpG island 9828
Tssr150479 18 34777012 to 34777075 63 + TSS region transcription start site region 150479
Kdm3b 18 34777047 to 34838660 61613 + protein coding gene KDM3B lysine (K)-specific demethylase 3B
Tssr150480 18 34777590 to 34777646 56 + TSS region transcription start site region 150480
Tssr150481 18 34777847 to 34777863 16 + TSS region transcription start site region 150481
Gm26538 18 34796895 to 34803484 6589 - lincRNA gene predicted gene, 26538
Cpgi9829 18 34840391 to 34840875 484 CpG island CpG island 9829
Tssr150482 18 34840575 to 34840586 11 + TSS region transcription start site region 150482
Reep2 18 34840589 to 34847463 6874 + protein coding gene receptor accessory protein 2
Tssr150483 18 34840600 to 34840614 14 + TSS region transcription start site region 150483
Tssr150484 18 34840618 to 34840706 88 + TSS region transcription start site region 150484
Gm41689 18 34849123 to 34850988 1865 + lncRNA gene predicted gene, 41689
D18Mit70 18 34849194 to 34849302 108 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 70
Tssr150485 18 34855562 to 34855601 39 + TSS region transcription start site region 150485
Tssr152830 18 34856222 to 34856241 19 - TSS region transcription start site region 152830
Tssr150486 18 34856531 to 34856545 14 + TSS region transcription start site region 150486
Cpgi9830 18 34859799 to 34862800 3001 CpG island CpG island 9830
Tssr152831 18 34860421 to 34860426 5 - TSS region transcription start site region 152831
Tssr150487 18 34860961 to 34860987 26 + TSS region transcription start site region 150487
Tssr150488 18 34861200 to 34861215 15 + TSS region transcription start site region 150488
Egr1 18 34861207 to 34864956 3749 + protein coding gene early growth response 1
Tssr152832 18 34861427 to 34861441 14 - TSS region transcription start site region 152832
Tssr150489 18 34862470 to 34862481 11 + TSS region transcription start site region 150489
Tssr150490 18 34862496 to 34862521 25 + TSS region transcription start site region 150490
Tssr150491 18 34862524 to 34862570 46 + TSS region transcription start site region 150491
Tssr150492 18 34862596 to 34862616 20 + TSS region transcription start site region 150492
Tssr150493 18 34862673 to 34862698 25 + TSS region transcription start site region 150493
Tssr152833 18 34862707 to 34862721 14 - TSS region transcription start site region 152833
Tssr152834 18 34862766 to 34862814 48 - TSS region transcription start site region 152834
Tssr150494 18 34862929 to 34862965 36 + TSS region transcription start site region 150494
Tssr150495 18 34862983 to 34863019 36 + TSS region transcription start site region 150495
Tssr150496 18 34863056 to 34863088 32 + TSS region transcription start site region 150496
Tssr150497 18 34863248 to 34863259 11 + TSS region transcription start site region 150497
Tssr150498 18 34863360 to 34863376 16 + TSS region transcription start site region 150498
Tssr150499 18 34863494 to 34863505 11 + TSS region transcription start site region 150499
Tssr150500 18 34864350 to 34864361 11 + TSS region transcription start site region 150500
Tssr150501 18 34864655 to 34864665 10 + TSS region transcription start site region 150501
Tssr152835 18 34886663 to 34886668 5 - TSS region transcription start site region 152835
Cpgi9831 18 34887055 to 34887988 933 CpG island CpG island 9831
Tssr152836 18 34887334 to 34887339 5 - TSS region transcription start site region 152836
Tssr152837 18 34887362 to 34887394 32 - TSS region transcription start site region 152837
Tssr150502 18 34887519 to 34887524 5 + TSS region transcription start site region 150502
Etf1 18 34902785 to 34932003 29218 - protein coding gene eukaryotic translation termination factor 1
D6Ertd109e 18 34904142 to 34904360 218 DNA segment DNA segment, Chr 6, ERATO Doi 109, expressed
Tssr152838 18 34908137 to 34908150 13 - TSS region transcription start site region 152838
Tssr152839 18 34924901 to 34924918 17 - TSS region transcription start site region 152839
Cpgi9832 18 34931167 to 34932665 1498 CpG island CpG island 9832
Tssr152840 18 34931664 to 34931671 7 - TSS region transcription start site region 152840
Tssr152841 18 34931798 to 34931812 14 - TSS region transcription start site region 152841
Tssr152842 18 34931891 to 34931920 29 - TSS region transcription start site region 152842
Tssr152843 18 34931931 to 34931985 54 - TSS region transcription start site region 152843
Tssr152844 18 34931993 to 34932004 11 - TSS region transcription start site region 152844
Tssr152845 18 34932005 to 34932009 4 - TSS region transcription start site region 152845
Tssr152846 18 34932016 to 34932020 4 - TSS region transcription start site region 152846
Tssr150503 18 34932160 to 34932179 19 + TSS region transcription start site region 150503
Tssr150504 18 34932289 to 34932312 23 + TSS region transcription start site region 150504
Tssr152847 18 34932584 to 34932608 24 - TSS region transcription start site region 152847
Hspa9 18 34937423 to 34954351 16928 - protein coding gene heat shock protein 9
Tssr152848 18 34940236 to 34940247 11 - TSS region transcription start site region 152848
Tssr152849 18 34940881 to 34940894 13 - TSS region transcription start site region 152849
Gm22200 18 34941234 to 34941300 66 - snoRNA gene predicted gene, 22200
Tssr152850 18 34941899 to 34941922 23 - TSS region transcription start site region 152850
Gm26109 18 34942644 to 34942713 69 - snoRNA gene predicted gene, 26109
Tssr152851 18 34946541 to 34946556 15 - TSS region transcription start site region 152851
Tssr152852 18 34947971 to 34948020 49 - TSS region transcription start site region 152852
D330004O07Rik 18 34949568 to 34951222 1654 unclassified gene RIKEN cDNA D330004O07 gene
Cpgi9833 18 34953881 to 34955186 1305 CpG island CpG island 9833
Tssr152853 18 34953930 to 34953939 9 - TSS region transcription start site region 152853
Tssr152854 18 34954255 to 34954266 11 - TSS region transcription start site region 152854
Tssr152855 18 34954276 to 34954287 11 - TSS region transcription start site region 152855
Tssr152856 18 34954302 to 34954359 57 - TSS region transcription start site region 152856
Tssr5276 18 34954654 to 34954690 36 + TSS region transcription start site region 5276
Tssr152857 18 34954667 to 34954697 30 - TSS region transcription start site region 152857
Gm6724 18 34969662 to 34970841 1179 - pseudogene predicted gene 6724
Gm36037 18 34982669 to 35079510 96841 + lncRNA gene predicted gene, 36037
Gm41690 18 34993627 to 34995566 1939 - lncRNA gene predicted gene, 41690
Phospq1 18 35006651 to 35006806 155 QTL phospholipid QTL 1
D18Mit15 18 35006651 to 35006806 155 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 15
Tssr150505 18 35034096 to 35034134 38 + TSS region transcription start site region 150505
Tssr5277 18 35034140 to 35034149 9 + TSS region transcription start site region 5277
Tssr150506 18 35034174 to 35034191 17 + TSS region transcription start site region 150506
Tssr150507 18 35046651 to 35046680 29 + TSS region transcription start site region 150507
Tssr150508 18 35048293 to 35048294 1 + TSS region transcription start site region 150508
Gm3587 18 35057753 to 35087943 30190 - lncRNA gene predicted gene 3587
Tssr152858 18 35087593 to 35087625 32 - TSS region transcription start site region 152858
Gm46617 18 35117299 to 35118775 1476 - lncRNA gene predicted gene, 46617
Cpgi9834 18 35118376 to 35119759 1383 CpG island CpG island 9834
Tssr152859 18 35118799 to 35118818 19 - TSS region transcription start site region 152859
Tssr150509 18 35118880 to 35118903 23 + TSS region transcription start site region 150509
Tssr150510 18 35118907 to 35118926 19 + TSS region transcription start site region 150510
Ctnna1 18 35118912 to 35254775 135863 + protein coding gene catenin (cadherin associated protein), alpha 1
Tssr150511 18 35118942 to 35118953 11 + TSS region transcription start site region 150511
Tssr150512 18 35119421 to 35119429 8 + TSS region transcription start site region 150512
Tssr150513 18 35119806 to 35119818 12 + TSS region transcription start site region 150513
Tssr150514 18 35119829 to 35119840 11 + TSS region transcription start site region 150514
Tssr150515 18 35120232 to 35120236 4 + TSS region transcription start site region 150515
Tssr150516 18 35130643 to 35130646 3 + TSS region transcription start site region 150516
Tssr152860 18 35130930 to 35130935 5 - TSS region transcription start site region 152860
Tssr150517 18 35141934 to 35141936 2 + TSS region transcription start site region 150517
Tssr150518 18 35154461 to 35154476 15 + TSS region transcription start site region 150518
Lrrtm2 18 35209011 to 35215024 6013 - protein coding gene leucine rich repeat transmembrane neuronal 2
Tssr152861 18 35214912 to 35214934 22 - TSS region transcription start site region 152861
Tssr152862 18 35214943 to 35214969 26 - TSS region transcription start site region 152862
Tssr152863 18 35214980 to 35214992 12 - TSS region transcription start site region 152863
Tssr152864 18 35215008 to 35215033 25 - TSS region transcription start site region 152864
Tssr152865 18 35215043 to 35215067 24 - TSS region transcription start site region 152865
Tssr150519 18 35215076 to 35215130 54 + TSS region transcription start site region 150519
Tssr150520 18 35220849 to 35220852 3 + TSS region transcription start site region 150520
Tssr150521 18 35235499 to 35235517 18 + TSS region transcription start site region 150521
Tssr152866 18 35258982 to 35258985 3 - TSS region transcription start site region 152866
Sil1 18 35266400 to 35498925 232525 - protein coding gene endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
Tssr152867 18 35343032 to 35343036 4 - TSS region transcription start site region 152867
Tssr5278 18 35438256 to 35438261 5 + TSS region transcription start site region 5278
Cpgi9835 18 35498504 to 35499151 647 CpG island CpG island 9835
Tssr152868 18 35498816 to 35498829 13 - TSS region transcription start site region 152868
Tssr152869 18 35498844 to 35498853 9 - TSS region transcription start site region 152869
Tssr152870 18 35498856 to 35498925 69 - TSS region transcription start site region 152870
Gm41691 18 35502712 to 35517526 14814 - lncRNA gene predicted gene, 41691
Tssr150522 18 35536539 to 35536546 7 + TSS region transcription start site region 150522
Gm5239 18 35536583 to 35536951 368 + pseudogene predicted pseudogene 5239
Gm41692 18 35540859 to 35542689 1830 + lncRNA gene predicted gene, 41692
Tssr150523 18 35553401 to 35553421 20 + TSS region transcription start site region 150523
Snhg4 18 35553410 to 35558316 4906 + lncRNA gene small nucleolar RNA host gene 4
Tssr150524 18 35553436 to 35553445 9 + TSS region transcription start site region 150524