Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:3375108-4345430

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9661 18 3382853 to 3383736 883 CpG island CpG island 9661
Tssr149890 18 3382979 to 3383065 86 + TSS region transcription start site region 149890
Cul2 18 3382988 to 3436377 53389 + protein coding gene cullin 2
Tssr149891 18 3383223 to 3383263 40 + TSS region transcription start site region 149891
Tssr149892 18 3383264 to 3383267 3 + TSS region transcription start site region 149892
Gm6235 18 3446814 to 3447222 408 + pseudogene predicted gene 6235
Tssr149893 18 3446896 to 3446906 10 + TSS region transcription start site region 149893
Tssr149894 18 3447084 to 3447129 45 + TSS region transcription start site region 149894
Gm50088 18 3466371 to 3466502 131 - pseudogene predicted gene, 50088
G430049J08Rik 18 3471630 to 3474315 2685 + unclassified gene RIKEN cDNA G430049J08 gene
Gm50089 18 3484218 to 3485193 975 + pseudogene predicted gene, 50089
Cpgi9662 18 3498978 to 3499341 363 CpG island CpG island 9662
Cpgi9663 18 3507142 to 3508651 1509 CpG island CpG island 9663
Tssr152309 18 3507810 to 3507817 7 - TSS region transcription start site region 152309
Tssr149895 18 3507917 to 3507943 26 + TSS region transcription start site region 149895
Tssr149896 18 3507945 to 3507964 19 + TSS region transcription start site region 149896
Bambi 18 3507957 to 3516404 8447 + protein coding gene BMP and activin membrane-bound inhibitor
Tssr149897 18 3507981 to 3507992 11 + TSS region transcription start site region 149897
Tssr149898 18 3508002 to 3508014 12 + TSS region transcription start site region 149898
Tssr5236 18 3531896 to 3531902 6 + TSS region transcription start site region 5236
Tssr149899 18 3542487 to 3542504 17 + TSS region transcription start site region 149899
Gm50090 18 3558675 to 3560037 1362 + pseudogene predicted gene, 50090
Gm50091 18 3616281 to 3618242 1961 + unclassified gene predicted gene, 50091
Cpgi9664 18 3638878 to 3639145 267 CpG island CpG island 9664
D18Mit65 18 3729005 to 3729146 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 65
Gm23643 18 3770741 to 3770804 63 - snRNA gene predicted gene, 23643
D18Mit66 18 3840944 to 3841103 159 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 66
Rpl7a-ps6 18 3857769 to 3858580 811 - pseudogene ribosomal protein L7A, pseudogene 6
Gm24632 18 3860108 to 3860430 322 + unclassified non-coding RNA gene predicted gene, 24632
Cpgi9665 18 3864092 to 3864357 265 CpG island CpG island 9665
Gm7378 18 4010256 to 4011157 901 + pseudogene predicted gene 7378
Gm6248 18 4052351 to 4052536 185 - pseudogene predicted gene 6248
D18Dcr5 18 4111252 to 4111347 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 5
Lyzl1 18 4165832 to 4182232 16400 + protein coding gene lysozyme-like 1
Tssr149900 18 4165837 to 4165850 13 + TSS region transcription start site region 149900
Tssr149901 18 4165856 to 4165868 12 + TSS region transcription start site region 149901
Tssr149902 18 4165884 to 4165894 10 + TSS region transcription start site region 149902
Gm10557 18 4198320 to 4198938 618 - pseudogene predicted gene 10557
Tssr152310 18 4198515 to 4198541 26 - TSS region transcription start site region 152310
Tssr152311 18 4239211 to 4239220 9 - TSS region transcription start site region 152311
Tssr152312 18 4239248 to 4239254 6 - TSS region transcription start site region 152312
Gm41657 18 4244121 to 4250779 6658 - lncRNA gene predicted gene, 41657
Gm7400 18 4293099 to 4294482 1383 - pseudogene predicted gene 7400
Tssr149903 18 4322668 to 4322671 3 + TSS region transcription start site region 149903
Map3k8 18 4331327 to 4353015 21688 - protein coding gene mitogen-activated protein kinase kinase kinase 8
Tssr152313 18 4336289 to 4336298 9 - TSS region transcription start site region 152313