Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:33727839-34500062

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9810 18 33794450 to 33795273 823 CpG island CpG island 9810
Tssr150440 18 33794882 to 33794902 20 + TSS region transcription start site region 150440
Epb41l4aos 18 33794892 to 33795986 1094 + lincRNA gene erythrocyte membrane protein band 4.1 like 4a, opposite strand
Tssr150441 18 33794915 to 33794924 9 + TSS region transcription start site region 150441
Gm23639 18 33795164 to 33795295 131 + snoRNA gene predicted gene, 23639
Epb41l4a 18 33796327 to 34007206 210879 - protein coding gene erythrocyte membrane protein band 4.1 like 4a
Cpgi9811 18 33798620 to 33798803 183 CpG island CpG island 9811
Tssr152770 18 33809195 to 33809199 4 - TSS region transcription start site region 152770
Tssr152771 18 33825769 to 33825790 21 - TSS region transcription start site region 152771
D18Mit84 18 33825906 to 33826046 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 84
Tssr152772 18 33832741 to 33832756 15 - TSS region transcription start site region 152772
Tssr152773 18 33832784 to 33832800 16 - TSS region transcription start site region 152773
Tssr152774 18 33832801 to 33832829 28 - TSS region transcription start site region 152774
Tssr152775 18 33832852 to 33832861 9 - TSS region transcription start site region 152775
D18Mit112 18 33847311 to 33847428 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 112
Tssr150442 18 33889472 to 33889509 37 + TSS region transcription start site region 150442
Tssr152776 18 33890566 to 33890588 22 - TSS region transcription start site region 152776
Tssr152777 18 33891474 to 33891512 38 - TSS region transcription start site region 152777
Tssr152778 18 33891628 to 33891666 38 - TSS region transcription start site region 152778
Tssr152779 18 33891994 to 33892029 35 - TSS region transcription start site region 152779
Cpgi9812 18 34005788 to 34007626 1838 CpG island CpG island 9812
Tssr152780 18 34006540 to 34006582 42 - TSS region transcription start site region 152780
Tssr152781 18 34006921 to 34006989 68 - TSS region transcription start site region 152781
Tssr152782 18 34007026 to 34007057 31 - TSS region transcription start site region 152782
Tssr150443 18 34007167 to 34007178 11 + TSS region transcription start site region 150443
Tssr152783 18 34007254 to 34007361 107 - TSS region transcription start site region 152783
Tssr152784 18 34007448 to 34007484 36 - TSS region transcription start site region 152784
Gm22788 18 34024220 to 34024280 60 - snRNA gene predicted gene, 22788
Tssr5273 18 34032454 to 34032483 29 + TSS region transcription start site region 5273
Gm6052 18 34046798 to 34047300 502 + pseudogene predicted gene 6052
Gm24432 18 34093445 to 34093570 125 + snoRNA gene predicted gene, 24432
Gm35718 18 34102839 to 34125062 22223 + lncRNA gene predicted gene, 35718
Gm5238 18 34125249 to 34125710 461 - pseudogene predicted gene 5238
Tssr152785 18 34139345 to 34139351 6 - TSS region transcription start site region 152785
Gm41687 18 34166751 to 34177539 10788 + lncRNA gene predicted gene, 41687
Gm41686 18 34177537 to 34183391 5854 + lncRNA gene predicted gene, 41686
Gm23411 18 34188878 to 34188939 61 - snRNA gene predicted gene, 23411
Gm10548 18 34207775 to 34221772 13997 - pseudogene predicted gene 10548
Cpgi9813 18 34220477 to 34221722 1245 CpG island CpG island 9813
Tssr150444 18 34220890 to 34220931 41 + TSS region transcription start site region 150444
Apc 18 34220924 to 34322189 101265 + protein coding gene APC, WNT signaling pathway regulator
Tssr150445 18 34220954 to 34220976 22 + TSS region transcription start site region 150445
Tssr150446 18 34220978 to 34221020 42 + TSS region transcription start site region 150446
Tssr150447 18 34221108 to 34221120 12 + TSS region transcription start site region 150447
Tssr152786 18 34221633 to 34221659 26 - TSS region transcription start site region 152786
Tssr150448 18 34246123 to 34246128 5 + TSS region transcription start site region 150448
Cpgi9814 18 34247561 to 34247819 258 CpG island CpG island 9814
Tssr150449 18 34247648 to 34247653 5 + TSS region transcription start site region 150449
Tssr150450 18 34247656 to 34247683 27 + TSS region transcription start site region 150450
Tssr150451 18 34247685 to 34247704 19 + TSS region transcription start site region 150451
D18Ertd734e 18 34251854 to 34252103 249 DNA segment DNA segment, Chr 18, ERATO Doi 734, expressed
Tssr150452 18 34312798 to 34312826 28 + TSS region transcription start site region 150452
Tssr150453 18 34313160 to 34313173 13 + TSS region transcription start site region 150453
Tssr150454 18 34313185 to 34313202 17 + TSS region transcription start site region 150454
Tssr150455 18 34315150 to 34315160 10 + TSS region transcription start site region 150455
Tssr150456 18 34315758 to 34315770 12 + TSS region transcription start site region 150456
Tssr150457 18 34316481 to 34316520 39 + TSS region transcription start site region 150457
Cpgi9815 18 34330801 to 34331634 833 CpG island CpG island 9815
Srp19 18 34331121 to 34336599 5478 + protein coding gene signal recognition particle 19
Tssr150458 18 34331132 to 34331197 65 + TSS region transcription start site region 150458
Reep5 18 34344889 to 34373415 28526 - protein coding gene receptor accessory protein 5
Tssr152787 18 34347087 to 34347108 21 - TSS region transcription start site region 152787
Tssr152788 18 34349749 to 34349789 40 - TSS region transcription start site region 152788
Tssr152789 18 34371039 to 34371042 3 - TSS region transcription start site region 152789
Tssr152790 18 34371842 to 34371845 3 - TSS region transcription start site region 152790
Tssr152791 18 34371964 to 34371987 23 - TSS region transcription start site region 152791
Tssr152792 18 34372045 to 34372056 11 - TSS region transcription start site region 152792
Cpgi9816 18 34372424 to 34373920 1496 CpG island CpG island 9816
Tssr152793 18 34372444 to 34372486 42 - TSS region transcription start site region 152793
Tssr152794 18 34372491 to 34372500 9 - TSS region transcription start site region 152794
Tssr152795 18 34372501 to 34372523 22 - TSS region transcription start site region 152795
Tssr152796 18 34373298 to 34373306 8 - TSS region transcription start site region 152796
Tssr152797 18 34373313 to 34373443 130 - TSS region transcription start site region 152797
Tssr152798 18 34373502 to 34373520 18 - TSS region transcription start site region 152798
Tssr150459 18 34408485 to 34408494 9 + TSS region transcription start site region 150459
Tssr150460 18 34408506 to 34408511 5 + TSS region transcription start site region 150460
Cpgi9817 18 34409185 to 34409764 579 CpG island CpG island 9817
Tssr150461 18 34409363 to 34409371 8 + TSS region transcription start site region 150461
Tssr5274 18 34409397 to 34409407 10 + TSS region transcription start site region 5274
Tssr150462 18 34409415 to 34409458 43 + TSS region transcription start site region 150462
Pkd2l2 18 34409423 to 34442789 33366 + protein coding gene polycystic kidney disease 2-like 2
Gm17942 18 34421783 to 34422554 771 - pseudogene predicted gene, 17942
Fam13b 18 34442352 to 34506823 64471 - protein coding gene family with sequence similarity 13, member B
Tssr152799 18 34481398 to 34481444 46 - TSS region transcription start site region 152799
Tssr152800 18 34491513 to 34491521 8 - TSS region transcription start site region 152800