Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:33135421-36585426

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592 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
Camk4 18 32934931 to 33191228 256297 + protein coding gene calcium/calmodulin-dependent protein kinase IV
D18Mit96 18 33152832 to 33152942 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 96
D18Mit226 18 33164096 to 33164220 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 226
Tssr150437 18 33181969 to 33181979 10 + TSS region transcription start site region 150437
Tssr150438 18 33181987 to 33181995 8 + TSS region transcription start site region 150438
Tssr150439 18 33193288 to 33193335 47 + TSS region transcription start site region 150439
Stard4 18 33199355 to 33213862 14507 - protein coding gene StAR-related lipid transfer (START) domain containing 4
Tssr152751 18 33205121 to 33205154 33 - TSS region transcription start site region 152751
D18Mit97 18 33205950 to 33206147 197 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 97
Cpgi9806 18 33213416 to 33214272 856 CpG island CpG island 9806
Tssr152752 18 33213771 to 33213783 12 - TSS region transcription start site region 152752
Tssr152753 18 33213786 to 33213827 41 - TSS region transcription start site region 152753
Tssr152754 18 33213832 to 33213852 20 - TSS region transcription start site region 152754
Gm41683 18 33240480 to 33262587 22107 - lncRNA gene predicted gene, 41683
Gm46640 18 33259645 to 33304316 44671 + lncRNA gene predicted gene, 46640
Tssr5272 18 33321883 to 33321887 4 + TSS region transcription start site region 5272
Gm5503 18 33384029 to 33384955 926 - pseudogene predicted gene 5503
Cpgi9807 18 33384712 to 33385180 468 CpG island CpG island 9807
Tssr152755 18 33384987 to 33385008 21 - TSS region transcription start site region 152755
D18Mit87 18 33410450 to 33410593 143 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 87
Nrep 18 33437019 to 33464029 27010 - protein coding gene neuronal regeneration related protein
Tssr152756 18 33438304 to 33438319 15 - TSS region transcription start site region 152756
Tssr152757 18 33438334 to 33438348 14 - TSS region transcription start site region 152757
Tssr152758 18 33438621 to 33438636 15 - TSS region transcription start site region 152758
Tssr152759 18 33438741 to 33438760 19 - TSS region transcription start site region 152759
Tssr152760 18 33462538 to 33462544 6 - TSS region transcription start site region 152760
Tssr152761 18 33463415 to 33463443 28 - TSS region transcription start site region 152761
Tssr152762 18 33463450 to 33463473 23 - TSS region transcription start site region 152762
Cpgi9808 18 33463503 to 33464500 997 CpG island CpG island 9808
Tssr152763 18 33463615 to 33463630 15 - TSS region transcription start site region 152763
Tssr152764 18 33463642 to 33463658 16 - TSS region transcription start site region 152764
Tssr152765 18 33463763 to 33463802 39 - TSS region transcription start site region 152765
Tssr152766 18 33463821 to 33463856 35 - TSS region transcription start site region 152766
Tssr152767 18 33463858 to 33463904 46 - TSS region transcription start site region 152767
Tssr152768 18 33464007 to 33464064 57 - TSS region transcription start site region 152768
Gm10549 18 33464163 to 33472448 8285 + unclassified gene predicted gene 10549
Tssr152769 18 33464365 to 33464386 21 - TSS region transcription start site region 152769
D18Mit158 18 33486280 to 33486554 274 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 158
Gm41684 18 33493311 to 33519866 26555 + lncRNA gene predicted gene, 41684
Cpgi9809 18 33568370 to 33568556 186 CpG island CpG island 9809
Cpgi9810 18 33794450 to 33795273 823 CpG island CpG island 9810
Tssr150440 18 33794882 to 33794902 20 + TSS region transcription start site region 150440
Epb41l4aos 18 33794892 to 33795986 1094 + lincRNA gene erythrocyte membrane protein band 4.1 like 4a, opposite strand
Tssr150441 18 33794915 to 33794924 9 + TSS region transcription start site region 150441
Gm23639 18 33795164 to 33795295 131 + snoRNA gene predicted gene, 23639
Epb41l4a 18 33796327 to 34007206 210879 - protein coding gene erythrocyte membrane protein band 4.1 like 4a
Cpgi9811 18 33798620 to 33798803 183 CpG island CpG island 9811
Tssr152770 18 33809195 to 33809199 4 - TSS region transcription start site region 152770
Tssr152771 18 33825769 to 33825790 21 - TSS region transcription start site region 152771
D18Mit84 18 33825906 to 33826046 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 84
Tssr152772 18 33832741 to 33832756 15 - TSS region transcription start site region 152772
Tssr152773 18 33832784 to 33832800 16 - TSS region transcription start site region 152773
Tssr152774 18 33832801 to 33832829 28 - TSS region transcription start site region 152774
Tssr152775 18 33832852 to 33832861 9 - TSS region transcription start site region 152775
D18Mit112 18 33847311 to 33847428 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 112
Tssr150442 18 33889472 to 33889509 37 + TSS region transcription start site region 150442
Tssr152776 18 33890566 to 33890588 22 - TSS region transcription start site region 152776
Tssr152777 18 33891474 to 33891512 38 - TSS region transcription start site region 152777
Tssr152778 18 33891628 to 33891666 38 - TSS region transcription start site region 152778
Tssr152779 18 33891994 to 33892029 35 - TSS region transcription start site region 152779
Cpgi9812 18 34005788 to 34007626 1838 CpG island CpG island 9812
Tssr152780 18 34006540 to 34006582 42 - TSS region transcription start site region 152780
Tssr152781 18 34006921 to 34006989 68 - TSS region transcription start site region 152781
Tssr152782 18 34007026 to 34007057 31 - TSS region transcription start site region 152782
Tssr150443 18 34007167 to 34007178 11 + TSS region transcription start site region 150443
Tssr152783 18 34007254 to 34007361 107 - TSS region transcription start site region 152783
Tssr152784 18 34007448 to 34007484 36 - TSS region transcription start site region 152784
Gm22788 18 34024220 to 34024280 60 - snRNA gene predicted gene, 22788
Tssr5273 18 34032454 to 34032483 29 + TSS region transcription start site region 5273
Gm6052 18 34046798 to 34047300 502 + pseudogene predicted gene 6052
Gm24432 18 34093445 to 34093570 125 + snoRNA gene predicted gene, 24432
Gm35718 18 34102839 to 34125062 22223 + lncRNA gene predicted gene, 35718
Gm5238 18 34125249 to 34125710 461 - pseudogene predicted gene 5238
Tssr152785 18 34139345 to 34139351 6 - TSS region transcription start site region 152785
Gm41687 18 34166751 to 34177539 10788 + lncRNA gene predicted gene, 41687
Gm41686 18 34177537 to 34183391 5854 + lncRNA gene predicted gene, 41686
Gm23411 18 34188878 to 34188939 61 - snRNA gene predicted gene, 23411
Gm10548 18 34207775 to 34221772 13997 - pseudogene predicted gene 10548
Cpgi9813 18 34220477 to 34221722 1245 CpG island CpG island 9813
Tssr150444 18 34220890 to 34220931 41 + TSS region transcription start site region 150444
Apc 18 34220924 to 34322189 101265 + protein coding gene APC, WNT signaling pathway regulator
Tssr150445 18 34220954 to 34220976 22 + TSS region transcription start site region 150445
Tssr150446 18 34220978 to 34221020 42 + TSS region transcription start site region 150446
Tssr150447 18 34221108 to 34221120 12 + TSS region transcription start site region 150447
Tssr152786 18 34221633 to 34221659 26 - TSS region transcription start site region 152786
Tssr150448 18 34246123 to 34246128 5 + TSS region transcription start site region 150448
Cpgi9814 18 34247561 to 34247819 258 CpG island CpG island 9814
Tssr150449 18 34247648 to 34247653 5 + TSS region transcription start site region 150449
Tssr150450 18 34247656 to 34247683 27 + TSS region transcription start site region 150450
Tssr150451 18 34247685 to 34247704 19 + TSS region transcription start site region 150451
D18Ertd734e 18 34251854 to 34252103 249 DNA segment DNA segment, Chr 18, ERATO Doi 734, expressed
Tssr150452 18 34312798 to 34312826 28 + TSS region transcription start site region 150452
Tssr150453 18 34313160 to 34313173 13 + TSS region transcription start site region 150453
Tssr150454 18 34313185 to 34313202 17 + TSS region transcription start site region 150454
Tssr150455 18 34315150 to 34315160 10 + TSS region transcription start site region 150455
Tssr150456 18 34315758 to 34315770 12 + TSS region transcription start site region 150456
Tssr150457 18 34316481 to 34316520 39 + TSS region transcription start site region 150457
Cpgi9815 18 34330801 to 34331634 833 CpG island CpG island 9815
Srp19 18 34331121 to 34336599 5478 + protein coding gene signal recognition particle 19
Tssr150458 18 34331132 to 34331197 65 + TSS region transcription start site region 150458
Reep5 18 34344889 to 34373415 28526 - protein coding gene receptor accessory protein 5
Tssr152787 18 34347087 to 34347108 21 - TSS region transcription start site region 152787
Tssr152788 18 34349749 to 34349789 40 - TSS region transcription start site region 152788
Tssr152789 18 34371039 to 34371042 3 - TSS region transcription start site region 152789
Tssr152790 18 34371842 to 34371845 3 - TSS region transcription start site region 152790
Tssr152791 18 34371964 to 34371987 23 - TSS region transcription start site region 152791
Tssr152792 18 34372045 to 34372056 11 - TSS region transcription start site region 152792
Cpgi9816 18 34372424 to 34373920 1496 CpG island CpG island 9816
Tssr152793 18 34372444 to 34372486 42 - TSS region transcription start site region 152793
Tssr152794 18 34372491 to 34372500 9 - TSS region transcription start site region 152794
Tssr152795 18 34372501 to 34372523 22 - TSS region transcription start site region 152795
Tssr152796 18 34373298 to 34373306 8 - TSS region transcription start site region 152796
Tssr152797 18 34373313 to 34373443 130 - TSS region transcription start site region 152797
Tssr152798 18 34373502 to 34373520 18 - TSS region transcription start site region 152798
Tssr150459 18 34408485 to 34408494 9 + TSS region transcription start site region 150459
Tssr150460 18 34408506 to 34408511 5 + TSS region transcription start site region 150460
Cpgi9817 18 34409185 to 34409764 579 CpG island CpG island 9817
Tssr150461 18 34409363 to 34409371 8 + TSS region transcription start site region 150461
Tssr5274 18 34409397 to 34409407 10 + TSS region transcription start site region 5274
Tssr150462 18 34409415 to 34409458 43 + TSS region transcription start site region 150462
Pkd2l2 18 34409423 to 34442789 33366 + protein coding gene polycystic kidney disease 2-like 2
Gm17942 18 34421783 to 34422554 771 - pseudogene predicted gene, 17942
Fam13b 18 34442352 to 34506823 64471 - protein coding gene family with sequence similarity 13, member B
Tssr152799 18 34481398 to 34481444 46 - TSS region transcription start site region 152799
Tssr152800 18 34491513 to 34491521 8 - TSS region transcription start site region 152800
Cpgi9818 18 34505947 to 34507192 1245 CpG island CpG island 9818
Tssr152801 18 34506664 to 34506684 20 - TSS region transcription start site region 152801
Tssr152802 18 34506741 to 34506768 27 - TSS region transcription start site region 152802
Tssr152803 18 34506788 to 34506877 89 - TSS region transcription start site region 152803
Tssr152804 18 34507332 to 34507348 16 - TSS region transcription start site region 152804
Tssr152805 18 34508163 to 34508198 35 - TSS region transcription start site region 152805
n-R5s24 18 34509737 to 34509853 116 + rRNA gene nuclear encoded rRNA 5S 24
Tssr152806 18 34511968 to 34511999 31 - TSS region transcription start site region 152806
Tssr152807 18 34523028 to 34523050 22 - TSS region transcription start site region 152807
Tssr152808 18 34523058 to 34523071 13 - TSS region transcription start site region 152808
Tssr150463 18 34542223 to 34542226 3 + TSS region transcription start site region 150463
Tssr150464 18 34542320 to 34542335 15 + TSS region transcription start site region 150464
Wnt8a 18 34542328 to 34548061 5733 + protein coding gene wingless-type MMTV integration site family, member 8A
Cpgi9819 18 34542882 to 34543038 156 CpG island CpG island 9819
Cpgi9820 18 34547217 to 34547619 402 CpG island CpG island 9820
Nme5 18 34562634 to 34579115 16481 - protein coding gene NME/NM23 family member 5
Tssr152809 18 34578771 to 34578776 5 - TSS region transcription start site region 152809
Tssr152810 18 34579041 to 34579052 11 - TSS region transcription start site region 152810
Tssr152811 18 34579072 to 34579130 58 - TSS region transcription start site region 152811
4933408B17Rik 18 34579846 to 34597468 17622 - protein coding gene RIKEN cDNA 4933408B17 gene
Tssr152812 18 34595876 to 34595913 37 - TSS region transcription start site region 152812
Brd8 18 34598615 to 34624601 25986 - protein coding gene bromodomain containing 8
Tssr152813 18 34605425 to 34605432 7 - TSS region transcription start site region 152813
Gm41688 18 34611376 to 34612920 1544 - lncRNA gene predicted gene, 41688
Cpgi9821 18 34624084 to 34625222 1138 CpG island CpG island 9821
Tssr152814 18 34624562 to 34624591 29 - TSS region transcription start site region 152814
Tssr5275 18 34624600 to 34624602 2 - TSS region transcription start site region 5275
Tssr150465 18 34624621 to 34624629 8 + TSS region transcription start site region 150465
Kif20a 18 34624624 to 34633265 8641 + protein coding gene kinesin family member 20A
Tssr150466 18 34624634 to 34624662 28 + TSS region transcription start site region 150466
Tssr152815 18 34624772 to 34624815 43 - TSS region transcription start site region 152815
Tssr152816 18 34624822 to 34624844 22 - TSS region transcription start site region 152816
Tssr150467 18 34624955 to 34625000 45 + TSS region transcription start site region 150467
Tssr150468 18 34625009 to 34625031 22 + TSS region transcription start site region 150468
Tssr150469 18 34625042 to 34625053 11 + TSS region transcription start site region 150469
Cdc23 18 34630951 to 34651735 20784 - protein coding gene CDC23 cell division cycle 23
n-R5s25 18 34647400 to 34647518 118 + rRNA gene nuclear encoded rRNA 5S 25
Cpgi9822 18 34651130 to 34651865 735 CpG island CpG island 9822
Tssr152817 18 34651681 to 34651692 11 - TSS region transcription start site region 152817
Tssr152818 18 34651695 to 34651702 7 - TSS region transcription start site region 152818
Tssr152819 18 34651703 to 34651741 38 - TSS region transcription start site region 152819
Tssr152820 18 34651745 to 34651759 14 - TSS region transcription start site region 152820
Tssr152821 18 34652491 to 34652509 18 - TSS region transcription start site region 152821
D18Mit232 18 34667851 to 34667940 89 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 232
Cpgi9823 18 34679636 to 34679902 266 CpG island CpG island 9823
Tssr152822 18 34688815 to 34688819 4 - TSS region transcription start site region 152822
Gfra3 18 34689903 to 34720387 30484 - protein coding gene glial cell line derived neurotrophic factor family receptor alpha 3
Cpgi9824 18 34695581 to 34695851 270 CpG island CpG island 9824
Tssr152823 18 34703856 to 34703863 7 - TSS region transcription start site region 152823
Cpgi9825 18 34720001 to 34720585 584 CpG island CpG island 9825
Tssr152824 18 34720245 to 34720262 17 - TSS region transcription start site region 152824
Tssr152825 18 34720269 to 34720311 42 - TSS region transcription start site region 152825
Cdc25c 18 34732997 to 34751533 18536 - protein coding gene cell division cycle 25C
Gm3550 18 34737368 to 34738014 646 + pseudogene predicted gene 3550
Tssr152826 18 34746889 to 34746890 1 - TSS region transcription start site region 152826
Cpgi9826 18 34751251 to 34752334 1083 CpG island CpG island 9826
Tssr152827 18 34751345 to 34751357 12 - TSS region transcription start site region 152827
Tssr152828 18 34751502 to 34751541 39 - TSS region transcription start site region 152828
Tssr152829 18 34751542 to 34751560 18 - TSS region transcription start site region 152829
Tssr150470 18 34751771 to 34751786 15 + TSS region transcription start site region 150470
Tssr150471 18 34751803 to 34751818 15 + TSS region transcription start site region 150471
2010110K18Rik 18 34753443 to 34758694 5251 + lincRNA gene RIKEN cDNA 2010110K18 gene
Tssr150472 18 34758853 to 34758879 26 + TSS region transcription start site region 150472
Tssr150473 18 34758890 to 34758897 7 + TSS region transcription start site region 150473
Fam53c 18 34758906 to 34773760 14854 + protein coding gene family with sequence similarity 53, member C
Gm3561 18 34758945 to 34761890 2945 - protein coding gene predicted gene 3561
Tssr150474 18 34759100 to 34759112 12 + TSS region transcription start site region 150474
Cpgi9827 18 34759247 to 34759994 747 CpG island CpG island 9827
Tssr150475 18 34759551 to 34759558 7 + TSS region transcription start site region 150475
Tssr150476 18 34762634 to 34762643 9 + TSS region transcription start site region 150476
Tssr150477 18 34768278 to 34768287 9 + TSS region transcription start site region 150477
Tssr150478 18 34776203 to 34776207 4 + TSS region transcription start site region 150478
Cpgi9828 18 34776411 to 34777830 1419 CpG island CpG island 9828
Tssr150479 18 34777012 to 34777075 63 + TSS region transcription start site region 150479