Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:32996280-33976554

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camk4 18 32934931 to 33191228 256297 + protein coding gene calcium/calmodulin-dependent protein kinase IV
9630041I06Rik 18 32994680 to 33002297 7617 unclassified gene RIKEN cDNA 9630041I06 gene
Gm22814 18 33004663 to 33004766 103 - snRNA gene predicted gene, 22814
Tssr150433 18 33007201 to 33007214 13 + TSS region transcription start site region 150433
Tssr150434 18 33007497 to 33007535 38 + TSS region transcription start site region 150434
Tssr150435 18 33007691 to 33007707 16 + TSS region transcription start site region 150435
D18Mit63 18 33066587 to 33066723 136 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 63
Pvcan3 18 33066587 to 33066723 136 QTL protection against vaginal candidiasis 3
Tssr150436 18 33067408 to 33067447 39 + TSS region transcription start site region 150436
D18Mit96 18 33152832 to 33152942 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 96
D18Mit226 18 33164096 to 33164220 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 226
Tssr150437 18 33181969 to 33181979 10 + TSS region transcription start site region 150437
Tssr150438 18 33181987 to 33181995 8 + TSS region transcription start site region 150438
Tssr150439 18 33193288 to 33193335 47 + TSS region transcription start site region 150439
Stard4 18 33199355 to 33213862 14507 - protein coding gene StAR-related lipid transfer (START) domain containing 4
Tssr152751 18 33205121 to 33205154 33 - TSS region transcription start site region 152751
D18Mit97 18 33205950 to 33206147 197 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 97
Cpgi9806 18 33213416 to 33214272 856 CpG island CpG island 9806
Tssr152752 18 33213771 to 33213783 12 - TSS region transcription start site region 152752
Tssr152753 18 33213786 to 33213827 41 - TSS region transcription start site region 152753
Tssr152754 18 33213832 to 33213852 20 - TSS region transcription start site region 152754
Gm41683 18 33240480 to 33262587 22107 - lncRNA gene predicted gene, 41683
Gm46640 18 33259645 to 33304316 44671 + lncRNA gene predicted gene, 46640
Tssr5272 18 33321883 to 33321887 4 + TSS region transcription start site region 5272
Gm5503 18 33384029 to 33384955 926 - pseudogene predicted gene 5503
Cpgi9807 18 33384712 to 33385180 468 CpG island CpG island 9807
Tssr152755 18 33384987 to 33385008 21 - TSS region transcription start site region 152755
D18Mit87 18 33410450 to 33410593 143 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 87
Nrep 18 33437019 to 33464029 27010 - protein coding gene neuronal regeneration related protein
Tssr152756 18 33438304 to 33438319 15 - TSS region transcription start site region 152756
Tssr152757 18 33438334 to 33438348 14 - TSS region transcription start site region 152757
Tssr152758 18 33438621 to 33438636 15 - TSS region transcription start site region 152758
Tssr152759 18 33438741 to 33438760 19 - TSS region transcription start site region 152759
Tssr152760 18 33462538 to 33462544 6 - TSS region transcription start site region 152760
Tssr152761 18 33463415 to 33463443 28 - TSS region transcription start site region 152761
Tssr152762 18 33463450 to 33463473 23 - TSS region transcription start site region 152762
Cpgi9808 18 33463503 to 33464500 997 CpG island CpG island 9808
Tssr152763 18 33463615 to 33463630 15 - TSS region transcription start site region 152763
Tssr152764 18 33463642 to 33463658 16 - TSS region transcription start site region 152764
Tssr152765 18 33463763 to 33463802 39 - TSS region transcription start site region 152765
Tssr152766 18 33463821 to 33463856 35 - TSS region transcription start site region 152766
Tssr152767 18 33463858 to 33463904 46 - TSS region transcription start site region 152767
Tssr152768 18 33464007 to 33464064 57 - TSS region transcription start site region 152768
Gm10549 18 33464163 to 33472448 8285 + unclassified gene predicted gene 10549
Tssr152769 18 33464365 to 33464386 21 - TSS region transcription start site region 152769
D18Mit158 18 33486280 to 33486554 274 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 158
Gm41684 18 33493311 to 33519866 26555 + lncRNA gene predicted gene, 41684
Cpgi9809 18 33568370 to 33568556 186 CpG island CpG island 9809
Cpgi9810 18 33794450 to 33795273 823 CpG island CpG island 9810
Tssr150440 18 33794882 to 33794902 20 + TSS region transcription start site region 150440
Epb41l4aos 18 33794892 to 33795986 1094 + lincRNA gene erythrocyte membrane protein band 4.1 like 4a, opposite strand
Tssr150441 18 33794915 to 33794924 9 + TSS region transcription start site region 150441
Gm23639 18 33795164 to 33795295 131 + snoRNA gene predicted gene, 23639
Epb41l4a 18 33796327 to 34007206 210879 - protein coding gene erythrocyte membrane protein band 4.1 like 4a
Cpgi9811 18 33798620 to 33798803 183 CpG island CpG island 9811
Tssr152770 18 33809195 to 33809199 4 - TSS region transcription start site region 152770
Tssr152771 18 33825769 to 33825790 21 - TSS region transcription start site region 152771
D18Mit84 18 33825906 to 33826046 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 84
Tssr152772 18 33832741 to 33832756 15 - TSS region transcription start site region 152772
Tssr152773 18 33832784 to 33832800 16 - TSS region transcription start site region 152773
Tssr152774 18 33832801 to 33832829 28 - TSS region transcription start site region 152774
Tssr152775 18 33832852 to 33832861 9 - TSS region transcription start site region 152775
D18Mit112 18 33847311 to 33847428 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 112
Tssr150442 18 33889472 to 33889509 37 + TSS region transcription start site region 150442
Tssr152776 18 33890566 to 33890588 22 - TSS region transcription start site region 152776
Tssr152777 18 33891474 to 33891512 38 - TSS region transcription start site region 152777
Tssr152778 18 33891628 to 33891666 38 - TSS region transcription start site region 152778
Tssr152779 18 33891994 to 33892029 35 - TSS region transcription start site region 152779