Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:32233623-33263796

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map3k2 18 32163089 to 32236751 73662 + protein coding gene mitogen-activated protein kinase kinase kinase 2
Cpgi9801 18 32239991 to 32240746 755 CpG island CpG island 9801
Tssr152734 18 32240227 to 32240274 47 - TSS region transcription start site region 152734
Ercc3 18 32240304 to 32270151 29847 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 3
Tssr150390 18 32240309 to 32240342 33 + TSS region transcription start site region 150390
Gm22325 18 32293350 to 32293657 307 + unclassified non-coding RNA gene predicted gene, 22325
D18Mit88 18 32312317 to 32312456 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 88
D18Mit200 18 32322947 to 32323067 120 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 200
A830052D11Rik 18 32359053 to 32378278 19225 - lincRNA gene RIKEN cDNA A830052D11 gene
Cpgi9802 18 32376748 to 32378184 1436 CpG island CpG island 9802
Tssr150391 18 32377135 to 32377139 4 + TSS region transcription start site region 150391
Tssr150392 18 32377176 to 32377289 113 + TSS region transcription start site region 150392
Bin1 18 32377230 to 32435737 58507 + protein coding gene bridging integrator 1
Tssr150393 18 32377294 to 32377317 23 + TSS region transcription start site region 150393
Tssr150394 18 32377365 to 32377368 3 + TSS region transcription start site region 150394
Tssr150395 18 32385559 to 32385572 13 + TSS region transcription start site region 150395
Tssr150396 18 32395911 to 32395951 40 + TSS region transcription start site region 150396
Tssr150397 18 32397554 to 32397561 7 + TSS region transcription start site region 150397
Tssr150398 18 32397580 to 32397595 15 + TSS region transcription start site region 150398
Tssr150399 18 32397617 to 32397678 61 + TSS region transcription start site region 150399
Tssr152735 18 32399983 to 32399989 6 - TSS region transcription start site region 152735
Tssr150400 18 32400252 to 32400281 29 + TSS region transcription start site region 150400
Tssr152736 18 32405459 to 32405467 8 - TSS region transcription start site region 152736
Tssr150401 18 32407593 to 32407630 37 + TSS region transcription start site region 150401
Tssr150402 18 32430904 to 32430928 24 + TSS region transcription start site region 150402
Tssr150403 18 32431969 to 32432017 48 + TSS region transcription start site region 150403
Tssr150404 18 32435256 to 32435281 25 + TSS region transcription start site region 150404
Tssr152737 18 32448409 to 32448422 13 - TSS region transcription start site region 152737
Tssr152738 18 32448432 to 32448446 14 - TSS region transcription start site region 152738
Gm35060 18 32458085 to 32462910 4825 - protein coding gene predicted gene, 35060
Tssr152739 18 32462462 to 32462468 6 - TSS region transcription start site region 152739
Tssr152740 18 32462490 to 32462504 14 - TSS region transcription start site region 152740
Tssr152741 18 32462505 to 32462512 7 - TSS region transcription start site region 152741
D18Mit60 18 32489109 to 32489313 204 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 60
Gm20136 18 32499500 to 32500432 932 - pseudogene predicted gene, 20136
Gm44577 18 32508209 to 32518537 10328 + bidirectional promoter lncRNA gene predicted gene 44577
Gypc 18 32528322 to 32560034 31712 - protein coding gene glycophorin C
Tssr152742 18 32553657 to 32553673 16 - TSS region transcription start site region 152742
Tssr152743 18 32555425 to 32555430 5 - TSS region transcription start site region 152743
Tssr150405 18 32558470 to 32558476 6 + TSS region transcription start site region 150405
Cpgi9803 18 32559477 to 32560078 601 CpG island CpG island 9803
Tssr152744 18 32559823 to 32559836 13 - TSS region transcription start site region 152744
Tssr152745 18 32559839 to 32559855 16 - TSS region transcription start site region 152745
Tssr152746 18 32559857 to 32559887 30 - TSS region transcription start site region 152746
Tssr152747 18 32559914 to 32560018 104 - TSS region transcription start site region 152747
Tssr152748 18 32560125 to 32560145 20 - TSS region transcription start site region 152748
Gm35480 18 32585357 to 32591702 6345 + lncRNA gene predicted gene, 35480
Gm25826 18 32621920 to 32622056 136 - snoRNA gene predicted gene, 25826
4930455D15Rik 18 32663642 to 32837287 173645 - lincRNA gene RIKEN cDNA 4930455D15 gene
D18Mit59 18 32748623 to 32748796 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 59
Tslp 18 32815383 to 32819797 4414 + protein coding gene thymic stromal lymphopoietin
Tssr150406 18 32816854 to 32816865 11 + TSS region transcription start site region 150406
Tssr150407 18 32816897 to 32816942 45 + TSS region transcription start site region 150407
Tssr150408 18 32817027 to 32817032 5 + TSS region transcription start site region 150408
Gm26378 18 32820693 to 32820799 106 + snRNA gene predicted gene, 26378
Tssr152749 18 32835309 to 32835313 4 - TSS region transcription start site region 152749
Cpgi9804 18 32836908 to 32837751 843 CpG island CpG island 9804
Wdr36 18 32837225 to 32866955 29730 + protein coding gene WD repeat domain 36
Tssr150409 18 32837229 to 32837240 11 + TSS region transcription start site region 150409
Tssr150410 18 32837245 to 32837266 21 + TSS region transcription start site region 150410
Tssr150411 18 32837271 to 32837307 36 + TSS region transcription start site region 150411
Tssr150412 18 32837309 to 32837332 23 + TSS region transcription start site region 150412
Tssr150413 18 32837338 to 32837353 15 + TSS region transcription start site region 150413
Tssr150414 18 32866169 to 32866173 4 + TSS region transcription start site region 150414
Mir6361 18 32880573 to 32880673 100 - miRNA gene microRNA 6361
2310026I22Rik 18 32923799 to 32934736 10937 - lincRNA gene RIKEN cDNA 2310026I22 gene
Camk4 18 32934931 to 33191228 256297 + protein coding gene calcium/calmodulin-dependent protein kinase IV
Tssr150415 18 32934940 to 32934978 38 + TSS region transcription start site region 150415
Cpgi9805 18 32938662 to 32939871 1209 CpG island CpG island 9805
Tssr150416 18 32938765 to 32938772 7 + TSS region transcription start site region 150416
Tssr150417 18 32938793 to 32938804 11 + TSS region transcription start site region 150417
Tssr150418 18 32938877 to 32938880 3 + TSS region transcription start site region 150418
Tssr150419 18 32938891 to 32938894 3 + TSS region transcription start site region 150419
Tssr150420 18 32938901 to 32938910 9 + TSS region transcription start site region 150420
Tssr150421 18 32938916 to 32938928 12 + TSS region transcription start site region 150421
Tssr150422 18 32938955 to 32938967 12 + TSS region transcription start site region 150422
Tssr150423 18 32939141 to 32939205 64 + TSS region transcription start site region 150423
Tssr150424 18 32939228 to 32939239 11 + TSS region transcription start site region 150424
Tssr150425 18 32939298 to 32939397 99 + TSS region transcription start site region 150425
Tssr150426 18 32939416 to 32939436 20 + TSS region transcription start site region 150426
Tssr150427 18 32939447 to 32939458 11 + TSS region transcription start site region 150427
Tssr150428 18 32958237 to 32958242 5 + TSS region transcription start site region 150428
Tssr150429 18 32958564 to 32958577 13 + TSS region transcription start site region 150429
Tssr150430 18 32961299 to 32961328 29 + TSS region transcription start site region 150430
Tssr152750 18 32969832 to 32969852 20 - TSS region transcription start site region 152750
Tssr150431 18 32978595 to 32978600 5 + TSS region transcription start site region 150431
Tssr5270 18 32980233 to 32980240 7 + TSS region transcription start site region 5270
Tssr5271 18 32985298 to 32985318 20 + TSS region transcription start site region 5271
9630041I06Rik 18 32994680 to 33002297 7617 unclassified gene RIKEN cDNA 9630041I06 gene
Tssr150432 18 32994974 to 32994978 4 + TSS region transcription start site region 150432
Gm22814 18 33004663 to 33004766 103 - snRNA gene predicted gene, 22814
Tssr150433 18 33007201 to 33007214 13 + TSS region transcription start site region 150433
Tssr150434 18 33007497 to 33007535 38 + TSS region transcription start site region 150434
Tssr150435 18 33007691 to 33007707 16 + TSS region transcription start site region 150435
Pvcan3 18 33066587 to 33066723 136 QTL protection against vaginal candidiasis 3
D18Mit63 18 33066587 to 33066723 136 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 63
Tssr150436 18 33067408 to 33067447 39 + TSS region transcription start site region 150436
D18Mit96 18 33152832 to 33152942 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 96
D18Mit226 18 33164096 to 33164220 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 226
Tssr150437 18 33181969 to 33181979 10 + TSS region transcription start site region 150437
Tssr150438 18 33181987 to 33181995 8 + TSS region transcription start site region 150438
Tssr150439 18 33193288 to 33193335 47 + TSS region transcription start site region 150439
Stard4 18 33199355 to 33213862 14507 - protein coding gene StAR-related lipid transfer (START) domain containing 4
Tssr152751 18 33205121 to 33205154 33 - TSS region transcription start site region 152751
D18Mit97 18 33205950 to 33206147 197 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 97
Cpgi9806 18 33213416 to 33214272 856 CpG island CpG island 9806
Tssr152752 18 33213771 to 33213783 12 - TSS region transcription start site region 152752
Tssr152753 18 33213786 to 33213827 41 - TSS region transcription start site region 152753
Tssr152754 18 33213832 to 33213852 20 - TSS region transcription start site region 152754
Gm41683 18 33240480 to 33262587 22107 - lncRNA gene predicted gene, 41683
Gm46640 18 33259645 to 33304316 44671 + lncRNA gene predicted gene, 46640