Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:32201987-34161995

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map3k2 18 32163089 to 32236751 73662 + protein coding gene mitogen-activated protein kinase kinase kinase 2
Cpgi9801 18 32239991 to 32240746 755 CpG island CpG island 9801
Tssr152734 18 32240227 to 32240274 47 - TSS region transcription start site region 152734
Ercc3 18 32240304 to 32270151 29847 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 3
Tssr150390 18 32240309 to 32240342 33 + TSS region transcription start site region 150390
Gm22325 18 32293350 to 32293657 307 + unclassified non-coding RNA gene predicted gene, 22325
D18Mit88 18 32312317 to 32312456 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 88
D18Mit200 18 32322947 to 32323067 120 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 200
A830052D11Rik 18 32359053 to 32378278 19225 - lincRNA gene RIKEN cDNA A830052D11 gene
Cpgi9802 18 32376748 to 32378184 1436 CpG island CpG island 9802
Tssr150391 18 32377135 to 32377139 4 + TSS region transcription start site region 150391
Tssr150392 18 32377176 to 32377289 113 + TSS region transcription start site region 150392
Bin1 18 32377230 to 32435737 58507 + protein coding gene bridging integrator 1
Tssr150393 18 32377294 to 32377317 23 + TSS region transcription start site region 150393
Tssr150394 18 32377365 to 32377368 3 + TSS region transcription start site region 150394
Tssr150395 18 32385559 to 32385572 13 + TSS region transcription start site region 150395
Tssr150396 18 32395911 to 32395951 40 + TSS region transcription start site region 150396
Tssr150397 18 32397554 to 32397561 7 + TSS region transcription start site region 150397
Tssr150398 18 32397580 to 32397595 15 + TSS region transcription start site region 150398
Tssr150399 18 32397617 to 32397678 61 + TSS region transcription start site region 150399
Tssr152735 18 32399983 to 32399989 6 - TSS region transcription start site region 152735
Tssr150400 18 32400252 to 32400281 29 + TSS region transcription start site region 150400
Tssr152736 18 32405459 to 32405467 8 - TSS region transcription start site region 152736
Tssr150401 18 32407593 to 32407630 37 + TSS region transcription start site region 150401
Tssr150402 18 32430904 to 32430928 24 + TSS region transcription start site region 150402
Tssr150403 18 32431969 to 32432017 48 + TSS region transcription start site region 150403
Tssr150404 18 32435256 to 32435281 25 + TSS region transcription start site region 150404
Tssr152737 18 32448409 to 32448422 13 - TSS region transcription start site region 152737
Tssr152738 18 32448432 to 32448446 14 - TSS region transcription start site region 152738
Gm35060 18 32458085 to 32462910 4825 - protein coding gene predicted gene, 35060
Tssr152739 18 32462462 to 32462468 6 - TSS region transcription start site region 152739
Tssr152740 18 32462490 to 32462504 14 - TSS region transcription start site region 152740
Tssr152741 18 32462505 to 32462512 7 - TSS region transcription start site region 152741
D18Mit60 18 32489109 to 32489313 204 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 60
Gm20136 18 32499500 to 32500432 932 - pseudogene predicted gene, 20136
Gm44577 18 32508209 to 32518537 10328 + bidirectional promoter lncRNA gene predicted gene 44577
Gypc 18 32528322 to 32560034 31712 - protein coding gene glycophorin C
Tssr152742 18 32553657 to 32553673 16 - TSS region transcription start site region 152742
Tssr152743 18 32555425 to 32555430 5 - TSS region transcription start site region 152743
Tssr150405 18 32558470 to 32558476 6 + TSS region transcription start site region 150405
Cpgi9803 18 32559477 to 32560078 601 CpG island CpG island 9803
Tssr152744 18 32559823 to 32559836 13 - TSS region transcription start site region 152744
Tssr152745 18 32559839 to 32559855 16 - TSS region transcription start site region 152745
Tssr152746 18 32559857 to 32559887 30 - TSS region transcription start site region 152746
Tssr152747 18 32559914 to 32560018 104 - TSS region transcription start site region 152747
Tssr152748 18 32560125 to 32560145 20 - TSS region transcription start site region 152748
Gm35480 18 32585357 to 32591702 6345 + lncRNA gene predicted gene, 35480
Gm25826 18 32621920 to 32622056 136 - snoRNA gene predicted gene, 25826
4930455D15Rik 18 32663642 to 32837287 173645 - lincRNA gene RIKEN cDNA 4930455D15 gene
D18Mit59 18 32748623 to 32748796 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 59
Tslp 18 32815383 to 32819797 4414 + protein coding gene thymic stromal lymphopoietin
Tssr150406 18 32816854 to 32816865 11 + TSS region transcription start site region 150406
Tssr150407 18 32816897 to 32816942 45 + TSS region transcription start site region 150407
Tssr150408 18 32817027 to 32817032 5 + TSS region transcription start site region 150408
Gm26378 18 32820693 to 32820799 106 + snRNA gene predicted gene, 26378
Tssr152749 18 32835309 to 32835313 4 - TSS region transcription start site region 152749
Cpgi9804 18 32836908 to 32837751 843 CpG island CpG island 9804
Wdr36 18 32837225 to 32866955 29730 + protein coding gene WD repeat domain 36
Tssr150409 18 32837229 to 32837240 11 + TSS region transcription start site region 150409
Tssr150410 18 32837245 to 32837266 21 + TSS region transcription start site region 150410
Tssr150411 18 32837271 to 32837307 36 + TSS region transcription start site region 150411
Tssr150412 18 32837309 to 32837332 23 + TSS region transcription start site region 150412
Tssr150413 18 32837338 to 32837353 15 + TSS region transcription start site region 150413
Tssr150414 18 32866169 to 32866173 4 + TSS region transcription start site region 150414
Mir6361 18 32880573 to 32880673 100 - miRNA gene microRNA 6361
2310026I22Rik 18 32923799 to 32934736 10937 - lincRNA gene RIKEN cDNA 2310026I22 gene
Camk4 18 32934931 to 33191228 256297 + protein coding gene calcium/calmodulin-dependent protein kinase IV
Tssr150415 18 32934940 to 32934978 38 + TSS region transcription start site region 150415
Cpgi9805 18 32938662 to 32939871 1209 CpG island CpG island 9805
Tssr150416 18 32938765 to 32938772 7 + TSS region transcription start site region 150416
Tssr150417 18 32938793 to 32938804 11 + TSS region transcription start site region 150417
Tssr150418 18 32938877 to 32938880 3 + TSS region transcription start site region 150418
Tssr150419 18 32938891 to 32938894 3 + TSS region transcription start site region 150419
Tssr150420 18 32938901 to 32938910 9 + TSS region transcription start site region 150420
Tssr150421 18 32938916 to 32938928 12 + TSS region transcription start site region 150421
Tssr150422 18 32938955 to 32938967 12 + TSS region transcription start site region 150422
Tssr150423 18 32939141 to 32939205 64 + TSS region transcription start site region 150423
Tssr150424 18 32939228 to 32939239 11 + TSS region transcription start site region 150424
Tssr150425 18 32939298 to 32939397 99 + TSS region transcription start site region 150425
Tssr150426 18 32939416 to 32939436 20 + TSS region transcription start site region 150426
Tssr150427 18 32939447 to 32939458 11 + TSS region transcription start site region 150427
Tssr150428 18 32958237 to 32958242 5 + TSS region transcription start site region 150428
Tssr150429 18 32958564 to 32958577 13 + TSS region transcription start site region 150429
Tssr150430 18 32961299 to 32961328 29 + TSS region transcription start site region 150430
Tssr152750 18 32969832 to 32969852 20 - TSS region transcription start site region 152750
Tssr150431 18 32978595 to 32978600 5 + TSS region transcription start site region 150431
Tssr5270 18 32980233 to 32980240 7 + TSS region transcription start site region 5270
Tssr5271 18 32985298 to 32985318 20 + TSS region transcription start site region 5271
9630041I06Rik 18 32994680 to 33002297 7617 unclassified gene RIKEN cDNA 9630041I06 gene
Tssr150432 18 32994974 to 32994978 4 + TSS region transcription start site region 150432
Gm22814 18 33004663 to 33004766 103 - snRNA gene predicted gene, 22814
Tssr150433 18 33007201 to 33007214 13 + TSS region transcription start site region 150433
Tssr150434 18 33007497 to 33007535 38 + TSS region transcription start site region 150434
Tssr150435 18 33007691 to 33007707 16 + TSS region transcription start site region 150435
Pvcan3 18 33066587 to 33066723 136 QTL protection against vaginal candidiasis 3
D18Mit63 18 33066587 to 33066723 136 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 63
Tssr150436 18 33067408 to 33067447 39 + TSS region transcription start site region 150436
D18Mit96 18 33152832 to 33152942 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 96
D18Mit226 18 33164096 to 33164220 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 226
Tssr150437 18 33181969 to 33181979 10 + TSS region transcription start site region 150437
Tssr150438 18 33181987 to 33181995 8 + TSS region transcription start site region 150438
Tssr150439 18 33193288 to 33193335 47 + TSS region transcription start site region 150439
Stard4 18 33199355 to 33213862 14507 - protein coding gene StAR-related lipid transfer (START) domain containing 4
Tssr152751 18 33205121 to 33205154 33 - TSS region transcription start site region 152751
D18Mit97 18 33205950 to 33206147 197 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 97
Cpgi9806 18 33213416 to 33214272 856 CpG island CpG island 9806
Tssr152752 18 33213771 to 33213783 12 - TSS region transcription start site region 152752
Tssr152753 18 33213786 to 33213827 41 - TSS region transcription start site region 152753
Tssr152754 18 33213832 to 33213852 20 - TSS region transcription start site region 152754
Gm41683 18 33240480 to 33262587 22107 - lncRNA gene predicted gene, 41683
Gm46640 18 33259645 to 33304316 44671 + lncRNA gene predicted gene, 46640
Tssr5272 18 33321883 to 33321887 4 + TSS region transcription start site region 5272
Gm5503 18 33384029 to 33384955 926 - pseudogene predicted gene 5503
Cpgi9807 18 33384712 to 33385180 468 CpG island CpG island 9807
Tssr152755 18 33384987 to 33385008 21 - TSS region transcription start site region 152755
D18Mit87 18 33410450 to 33410593 143 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 87
Nrep 18 33437019 to 33464029 27010 - protein coding gene neuronal regeneration related protein
Tssr152756 18 33438304 to 33438319 15 - TSS region transcription start site region 152756
Tssr152757 18 33438334 to 33438348 14 - TSS region transcription start site region 152757
Tssr152758 18 33438621 to 33438636 15 - TSS region transcription start site region 152758
Tssr152759 18 33438741 to 33438760 19 - TSS region transcription start site region 152759
Tssr152760 18 33462538 to 33462544 6 - TSS region transcription start site region 152760
Tssr152761 18 33463415 to 33463443 28 - TSS region transcription start site region 152761
Tssr152762 18 33463450 to 33463473 23 - TSS region transcription start site region 152762
Cpgi9808 18 33463503 to 33464500 997 CpG island CpG island 9808
Tssr152763 18 33463615 to 33463630 15 - TSS region transcription start site region 152763
Tssr152764 18 33463642 to 33463658 16 - TSS region transcription start site region 152764
Tssr152765 18 33463763 to 33463802 39 - TSS region transcription start site region 152765
Tssr152766 18 33463821 to 33463856 35 - TSS region transcription start site region 152766
Tssr152767 18 33463858 to 33463904 46 - TSS region transcription start site region 152767
Tssr152768 18 33464007 to 33464064 57 - TSS region transcription start site region 152768
Gm10549 18 33464163 to 33472448 8285 + unclassified gene predicted gene 10549
Tssr152769 18 33464365 to 33464386 21 - TSS region transcription start site region 152769
D18Mit158 18 33486280 to 33486554 274 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 158
Gm41684 18 33493311 to 33519866 26555 + lncRNA gene predicted gene, 41684
Cpgi9809 18 33568370 to 33568556 186 CpG island CpG island 9809
Cpgi9810 18 33794450 to 33795273 823 CpG island CpG island 9810
Tssr150440 18 33794882 to 33794902 20 + TSS region transcription start site region 150440
Epb41l4aos 18 33794892 to 33795986 1094 + lincRNA gene erythrocyte membrane protein band 4.1 like 4a, opposite strand
Tssr150441 18 33794915 to 33794924 9 + TSS region transcription start site region 150441
Gm23639 18 33795164 to 33795295 131 + snoRNA gene predicted gene, 23639
Epb41l4a 18 33796327 to 34007206 210879 - protein coding gene erythrocyte membrane protein band 4.1 like 4a
Cpgi9811 18 33798620 to 33798803 183 CpG island CpG island 9811
Tssr152770 18 33809195 to 33809199 4 - TSS region transcription start site region 152770
Tssr152771 18 33825769 to 33825790 21 - TSS region transcription start site region 152771
D18Mit84 18 33825906 to 33826046 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 84
Tssr152772 18 33832741 to 33832756 15 - TSS region transcription start site region 152772
Tssr152773 18 33832784 to 33832800 16 - TSS region transcription start site region 152773
Tssr152774 18 33832801 to 33832829 28 - TSS region transcription start site region 152774
Tssr152775 18 33832852 to 33832861 9 - TSS region transcription start site region 152775
D18Mit112 18 33847311 to 33847428 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 112
Tssr150442 18 33889472 to 33889509 37 + TSS region transcription start site region 150442
Tssr152776 18 33890566 to 33890588 22 - TSS region transcription start site region 152776
Tssr152777 18 33891474 to 33891512 38 - TSS region transcription start site region 152777
Tssr152778 18 33891628 to 33891666 38 - TSS region transcription start site region 152778
Tssr152779 18 33891994 to 33892029 35 - TSS region transcription start site region 152779
Cpgi9812 18 34005788 to 34007626 1838 CpG island CpG island 9812
Tssr152780 18 34006540 to 34006582 42 - TSS region transcription start site region 152780
Tssr152781 18 34006921 to 34006989 68 - TSS region transcription start site region 152781
Tssr152782 18 34007026 to 34007057 31 - TSS region transcription start site region 152782
Tssr150443 18 34007167 to 34007178 11 + TSS region transcription start site region 150443
Tssr152783 18 34007254 to 34007361 107 - TSS region transcription start site region 152783
Tssr152784 18 34007448 to 34007484 36 - TSS region transcription start site region 152784
Gm22788 18 34024220 to 34024280 60 - snRNA gene predicted gene, 22788
Tssr5273 18 34032454 to 34032483 29 + TSS region transcription start site region 5273
Gm6052 18 34046798 to 34047300 502 + pseudogene predicted gene 6052
Gm24432 18 34093445 to 34093570 125 + snoRNA gene predicted gene, 24432
Gm35718 18 34102839 to 34125062 22223 + lncRNA gene predicted gene, 35718
Gm5238 18 34125249 to 34125710 461 - pseudogene predicted gene 5238
Tssr152785 18 34139345 to 34139351 6 - TSS region transcription start site region 152785