Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:31907972-32417982

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sft2d3 18 31909098 to 31911824 2726 - protein coding gene SFT2 domain containing 3
Cpgi9793 18 31910232 to 31911492 1260 CpG island CpG island 9793
Tssr150371 18 31910762 to 31910848 86 + TSS region transcription start site region 150371
1810036N14Rik 18 31910819 to 31911918 1099 unclassified gene RIKEN cDNA 1810036N14 gene
Tssr152717 18 31911250 to 31911278 28 - TSS region transcription start site region 152717
Tssr150372 18 31922269 to 31922272 3 + TSS region transcription start site region 150372
Tssr150373 18 31922286 to 31922304 18 + TSS region transcription start site region 150373
Lims2 18 31922290 to 31958619 36329 + protein coding gene LIM and senescent cell antigen like domains 2
Cpgi9794 18 31931060 to 31931674 614 CpG island CpG island 9794
Tssr150374 18 31931275 to 31931283 8 + TSS region transcription start site region 150374
Tssr150375 18 31931305 to 31931348 43 + TSS region transcription start site region 150375
Tssr150376 18 31931453 to 31931460 7 + TSS region transcription start site region 150376
Tssr150377 18 31931470 to 31931520 50 + TSS region transcription start site region 150377
Tssr150378 18 31937270 to 31937288 18 + TSS region transcription start site region 150378
Gm46619 18 31937560 to 31939110 1550 - lncRNA gene predicted gene, 46619
Cpgi9795 18 31938582 to 31939512 930 CpG island CpG island 9795
Gpr17 18 31942997 to 31949636 6639 - protein coding gene G protein-coupled receptor 17
Tssr152718 18 31949571 to 31949588 17 - TSS region transcription start site region 152718
Tssr152719 18 31949694 to 31949710 16 - TSS region transcription start site region 152719
Tssr152720 18 31949714 to 31949742 28 - TSS region transcription start site region 152720
Tssr152721 18 31949795 to 31949814 19 - TSS region transcription start site region 152721
Tssr152722 18 31949822 to 31949835 13 - TSS region transcription start site region 152722
Tssr152723 18 31949870 to 31949884 14 - TSS region transcription start site region 152723
Tssr150379 18 31954830 to 31954872 42 + TSS region transcription start site region 150379
Tssr150380 18 31955107 to 31955129 22 + TSS region transcription start site region 150380
Tssr150381 18 31958014 to 31958039 25 + TSS region transcription start site region 150381
Myo7b 18 31959234 to 32036931 77697 - protein coding gene myosin VIIB
Tssr152724 18 31998130 to 31998157 27 - TSS region transcription start site region 152724
Gm16344 18 32021740 to 32026610 4870 + antisense lncRNA gene predicted gene 16344
Gm16345 18 32031089 to 32031246 157 + pseudogene predicted gene 16345
Tssr152725 18 32035176 to 32035180 4 - TSS region transcription start site region 152725
Tssr152726 18 32036941 to 32037019 78 - TSS region transcription start site region 152726
Gm35010 18 32056113 to 32057494 1381 + pseudogene predicted gene, 35010
Cpgi9796 18 32067522 to 32068316 794 CpG island CpG island 9796
Tssr150382 18 32067729 to 32067811 82 + TSS region transcription start site region 150382
Iws1 18 32067741 to 32104328 36587 + protein coding gene IWS1, SUPT6 interacting protein
Tssr150383 18 32067973 to 32068013 40 + TSS region transcription start site region 150383
Tssr152727 18 32068158 to 32068195 37 - TSS region transcription start site region 152727
Tssr150384 18 32068883 to 32068887 4 + TSS region transcription start site region 150384
Gm49966 18 32112041 to 32112307 266 - pseudogene predicted gene, 49966
4933435E02Rik 18 32112459 to 32120412 7953 unclassified gene RIKEN cDNA 4933435E02 gene
Proc 18 32123126 to 32139570 16444 - protein coding gene protein C
Cpgi9797 18 32133084 to 32133510 426 CpG island CpG island 9797
Tssr152728 18 32134659 to 32134690 31 - TSS region transcription start site region 152728
Tssr152729 18 32135952 to 32135954 2 - TSS region transcription start site region 152729
Tssr152730 18 32136511 to 32136514 3 - TSS region transcription start site region 152730
Tssr152731 18 32138020 to 32138027 7 - TSS region transcription start site region 152731
Tssr152732 18 32138162 to 32138169 7 - TSS region transcription start site region 152732
Tssr152733 18 32138175 to 32138199 24 - TSS region transcription start site region 152733
Cpgi9798 18 32139500 to 32139888 388 CpG island CpG island 9798
Gm5969 18 32140729 to 32141830 1101 + pseudogene predicted gene 5969
Cpgi9799 18 32147545 to 32147785 240 CpG island CpG island 9799
Tssr5268 18 32147743 to 32147756 13 + TSS region transcription start site region 5268
Gm26717 18 32152427 to 32158291 5864 + lincRNA gene predicted gene, 26717
Gm34806 18 32154406 to 32162759 8353 - lncRNA gene predicted gene, 34806
Cpgi9800 18 32162560 to 32163859 1299 CpG island CpG island 9800
Tssr150385 18 32162972 to 32162982 10 + TSS region transcription start site region 150385
Tssr5269 18 32162991 to 32162992 1 + TSS region transcription start site region 5269
Tssr150386 18 32163015 to 32163020 5 + TSS region transcription start site region 150386
Tssr150387 18 32163042 to 32163053 11 + TSS region transcription start site region 150387
Tssr150388 18 32163062 to 32163069 7 + TSS region transcription start site region 150388
Tssr150389 18 32163073 to 32163115 42 + TSS region transcription start site region 150389
Map3k2 18 32163089 to 32236751 73662 + protein coding gene mitogen-activated protein kinase kinase kinase 2
Cpgi9801 18 32239991 to 32240746 755 CpG island CpG island 9801
Tssr152734 18 32240227 to 32240274 47 - TSS region transcription start site region 152734
Ercc3 18 32240304 to 32270151 29847 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 3
Tssr150390 18 32240309 to 32240342 33 + TSS region transcription start site region 150390
Gm22325 18 32293350 to 32293657 307 + unclassified non-coding RNA gene predicted gene, 22325
D18Mit88 18 32312317 to 32312456 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 88
D18Mit200 18 32322947 to 32323067 120 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 200
A830052D11Rik 18 32359053 to 32378278 19225 - lincRNA gene RIKEN cDNA A830052D11 gene
Cpgi9802 18 32376748 to 32378184 1436 CpG island CpG island 9802
Tssr150391 18 32377135 to 32377139 4 + TSS region transcription start site region 150391
Tssr150392 18 32377176 to 32377289 113 + TSS region transcription start site region 150392
Bin1 18 32377230 to 32435737 58507 + protein coding gene bridging integrator 1
Tssr150393 18 32377294 to 32377317 23 + TSS region transcription start site region 150393
Tssr150394 18 32377365 to 32377368 3 + TSS region transcription start site region 150394
Tssr150395 18 32385559 to 32385572 13 + TSS region transcription start site region 150395
Tssr150396 18 32395911 to 32395951 40 + TSS region transcription start site region 150396
Tssr150397 18 32397554 to 32397561 7 + TSS region transcription start site region 150397
Tssr150398 18 32397580 to 32397595 15 + TSS region transcription start site region 150398
Tssr150399 18 32397617 to 32397678 61 + TSS region transcription start site region 150399
Tssr152735 18 32399983 to 32399989 6 - TSS region transcription start site region 152735
Tssr150400 18 32400252 to 32400281 29 + TSS region transcription start site region 150400
Tssr152736 18 32405459 to 32405467 8 - TSS region transcription start site region 152736
Tssr150401 18 32407593 to 32407630 37 + TSS region transcription start site region 150401