Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:31717997-32174636

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sap130 18 31634371 to 31723061 88690 + protein coding gene Sin3A associated protein
Gm50060 18 31738715 to 31739039 324 + pseudogene predicted gene, 50060
Cpgi9790 18 31759201 to 31760638 1437 CpG island CpG island 9790
Tssr150353 18 31759817 to 31759851 34 + TSS region transcription start site region 150353
Ammecr1l 18 31759826 to 31782743 22917 + protein coding gene AMME chromosomal region gene 1-like
Tssr150354 18 31759854 to 31759868 14 + TSS region transcription start site region 150354
Tssr150355 18 31759888 to 31759973 85 + TSS region transcription start site region 150355
Tssr150356 18 31759976 to 31760003 27 + TSS region transcription start site region 150356
Tssr150357 18 31760010 to 31760034 24 + TSS region transcription start site region 150357
Tssr150358 18 31760581 to 31760656 75 + TSS region transcription start site region 150358
Tssr150359 18 31771953 to 31771988 35 + TSS region transcription start site region 150359
Tssr150360 18 31775851 to 31775852 1 + TSS region transcription start site region 150360
Tssr150361 18 31777404 to 31777416 12 + TSS region transcription start site region 150361
Tssr150362 18 31777484 to 31777487 3 + TSS region transcription start site region 150362
Tssr150363 18 31780711 to 31780739 28 + TSS region transcription start site region 150363
Gm26533 18 31781226 to 31789045 7819 - lincRNA gene predicted gene, 26533
Cpgi9791 18 31788850 to 31789389 539 CpG island CpG island 9791
Tssr150364 18 31789120 to 31789171 51 + TSS region transcription start site region 150364
Polr2d 18 31789159 to 31796701 7542 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide D
Cpgi9792 18 31803764 to 31804679 915 CpG island CpG island 9792
Tssr150365 18 31804084 to 31804120 36 + TSS region transcription start site region 150365
Wdr33 18 31804090 to 31907397 103307 + protein coding gene WD repeat domain 33
Gm6665 18 31819865 to 31820413 548 - pseudogene predicted gene 6665
Tssr150366 18 31857040 to 31857049 9 + TSS region transcription start site region 150366
Tssr150367 18 31857074 to 31857085 11 + TSS region transcription start site region 150367
Gm26823 18 31859082 to 31861764 2682 - lincRNA gene predicted gene, 26823
Tssr150368 18 31860515 to 31860530 15 + TSS region transcription start site region 150368
Tssr150369 18 31860610 to 31860625 15 + TSS region transcription start site region 150369
Tssr150370 18 31881241 to 31881251 10 + TSS region transcription start site region 150370
Tssr5267 18 31903516 to 31903517 1 - TSS region transcription start site region 5267
Sft2d3 18 31909098 to 31911824 2726 - protein coding gene SFT2 domain containing 3
Cpgi9793 18 31910232 to 31911492 1260 CpG island CpG island 9793
Tssr150371 18 31910762 to 31910848 86 + TSS region transcription start site region 150371
1810036N14Rik 18 31910819 to 31911918 1099 unclassified gene RIKEN cDNA 1810036N14 gene
Tssr152717 18 31911250 to 31911278 28 - TSS region transcription start site region 152717
Tssr150372 18 31922269 to 31922272 3 + TSS region transcription start site region 150372
Tssr150373 18 31922286 to 31922304 18 + TSS region transcription start site region 150373
Lims2 18 31922290 to 31958619 36329 + protein coding gene LIM and senescent cell antigen like domains 2
Cpgi9794 18 31931060 to 31931674 614 CpG island CpG island 9794
Tssr150374 18 31931275 to 31931283 8 + TSS region transcription start site region 150374
Tssr150375 18 31931305 to 31931348 43 + TSS region transcription start site region 150375
Tssr150376 18 31931453 to 31931460 7 + TSS region transcription start site region 150376
Tssr150377 18 31931470 to 31931520 50 + TSS region transcription start site region 150377
Tssr150378 18 31937270 to 31937288 18 + TSS region transcription start site region 150378
Gm46619 18 31937560 to 31939110 1550 - lncRNA gene predicted gene, 46619
Cpgi9795 18 31938582 to 31939512 930 CpG island CpG island 9795
Gpr17 18 31942997 to 31949636 6639 - protein coding gene G protein-coupled receptor 17
Tssr152718 18 31949571 to 31949588 17 - TSS region transcription start site region 152718
Tssr152719 18 31949694 to 31949710 16 - TSS region transcription start site region 152719
Tssr152720 18 31949714 to 31949742 28 - TSS region transcription start site region 152720
Tssr152721 18 31949795 to 31949814 19 - TSS region transcription start site region 152721
Tssr152722 18 31949822 to 31949835 13 - TSS region transcription start site region 152722
Tssr152723 18 31949870 to 31949884 14 - TSS region transcription start site region 152723
Tssr150379 18 31954830 to 31954872 42 + TSS region transcription start site region 150379
Tssr150380 18 31955107 to 31955129 22 + TSS region transcription start site region 150380
Tssr150381 18 31958014 to 31958039 25 + TSS region transcription start site region 150381
Myo7b 18 31959234 to 32036931 77697 - protein coding gene myosin VIIB
Tssr152724 18 31998130 to 31998157 27 - TSS region transcription start site region 152724
Gm16344 18 32021740 to 32026610 4870 + antisense lncRNA gene predicted gene 16344
Gm16345 18 32031089 to 32031246 157 + pseudogene predicted gene 16345
Tssr152725 18 32035176 to 32035180 4 - TSS region transcription start site region 152725
Tssr152726 18 32036941 to 32037019 78 - TSS region transcription start site region 152726
Gm35010 18 32056113 to 32057494 1381 + pseudogene predicted gene, 35010
Cpgi9796 18 32067522 to 32068316 794 CpG island CpG island 9796
Tssr150382 18 32067729 to 32067811 82 + TSS region transcription start site region 150382
Iws1 18 32067741 to 32104328 36587 + protein coding gene IWS1, SUPT6 interacting protein
Tssr150383 18 32067973 to 32068013 40 + TSS region transcription start site region 150383
Tssr152727 18 32068158 to 32068195 37 - TSS region transcription start site region 152727
Tssr150384 18 32068883 to 32068887 4 + TSS region transcription start site region 150384
Gm49966 18 32112041 to 32112307 266 - pseudogene predicted gene, 49966
4933435E02Rik 18 32112459 to 32120412 7953 unclassified gene RIKEN cDNA 4933435E02 gene
Proc 18 32123126 to 32139570 16444 - protein coding gene protein C
Cpgi9797 18 32133084 to 32133510 426 CpG island CpG island 9797
Tssr152728 18 32134659 to 32134690 31 - TSS region transcription start site region 152728
Tssr152729 18 32135952 to 32135954 2 - TSS region transcription start site region 152729
Tssr152730 18 32136511 to 32136514 3 - TSS region transcription start site region 152730
Tssr152731 18 32138020 to 32138027 7 - TSS region transcription start site region 152731
Tssr152732 18 32138162 to 32138169 7 - TSS region transcription start site region 152732
Tssr152733 18 32138175 to 32138199 24 - TSS region transcription start site region 152733
Cpgi9798 18 32139500 to 32139888 388 CpG island CpG island 9798
Gm5969 18 32140729 to 32141830 1101 + pseudogene predicted gene 5969
Cpgi9799 18 32147545 to 32147785 240 CpG island CpG island 9799
Tssr5268 18 32147743 to 32147756 13 + TSS region transcription start site region 5268
Gm26717 18 32152427 to 32158291 5864 + lincRNA gene predicted gene, 26717
Gm34806 18 32154406 to 32162759 8353 - lncRNA gene predicted gene, 34806
Cpgi9800 18 32162560 to 32163859 1299 CpG island CpG island 9800
Tssr150385 18 32162972 to 32162982 10 + TSS region transcription start site region 150385
Tssr5269 18 32162991 to 32162992 1 + TSS region transcription start site region 5269
Tssr150386 18 32163015 to 32163020 5 + TSS region transcription start site region 150386
Tssr150387 18 32163042 to 32163053 11 + TSS region transcription start site region 150387
Tssr150388 18 32163062 to 32163069 7 + TSS region transcription start site region 150388
Tssr150389 18 32163073 to 32163115 42 + TSS region transcription start site region 150389
Map3k2 18 32163089 to 32236751 73662 + protein coding gene mitogen-activated protein kinase kinase kinase 2