Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:31305516-31915546

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rit2 18 30974314 to 31317128 342814 - protein coding gene Ras-like without CAAX 2
Tssr152697 18 31316902 to 31316911 9 - TSS region transcription start site region 152697
Tssr152698 18 31316915 to 31316926 11 - TSS region transcription start site region 152698
Tssr152699 18 31316959 to 31316970 11 - TSS region transcription start site region 152699
Tssr152700 18 31316982 to 31316991 9 - TSS region transcription start site region 152700
Tssr152701 18 31317001 to 31317041 40 - TSS region transcription start site region 152701
Tssr152702 18 31317043 to 31317128 85 - TSS region transcription start site region 152702
Tssr152703 18 31317138 to 31317149 11 - TSS region transcription start site region 152703
Tssr152704 18 31317279 to 31317307 28 - TSS region transcription start site region 152704
Tssr150345 18 31324469 to 31324476 7 + TSS region transcription start site region 150345
Gm7941 18 31349183 to 31350204 1021 - pseudogene predicted gene 7941
Gm23283 18 31389994 to 31390103 109 - miRNA gene predicted gene, 23283
Gm41681 18 31397610 to 31403371 5761 - lncRNA gene predicted gene, 41681
Gm18886 18 31422248 to 31422929 681 - pseudogene predicted gene, 18886
Syt4 18 31437808 to 31447406 9598 - protein coding gene synaptotagmin IV
Tssr152705 18 31439683 to 31439689 6 - TSS region transcription start site region 152705
Gm26658 18 31440318 to 31449099 8781 + lincRNA gene predicted gene, 26658
Cpgi9787 18 31447272 to 31447497 225 CpG island CpG island 9787
Tssr152706 18 31447327 to 31447328 1 - TSS region transcription start site region 152706
Tssr152707 18 31447348 to 31447376 28 - TSS region transcription start site region 152707
Tssr152708 18 31447383 to 31447407 24 - TSS region transcription start site region 152708
Gm25396 18 31466235 to 31466367 132 - snoRNA gene predicted gene, 25396
Gm5241 18 31519699 to 31520762 1063 - pseudogene predicted gene 5241
Gm38606 18 31556114 to 31571194 15080 - lncRNA gene predicted gene, 38606
Tssr150346 18 31568418 to 31568421 3 + TSS region transcription start site region 150346
Slc25a46 18 31580168 to 31609902 29734 - protein coding gene solute carrier family 25, member 46
Tssr152709 18 31582250 to 31582259 9 - TSS region transcription start site region 152709
Tssr152710 18 31597779 to 31597795 16 - TSS region transcription start site region 152710
Tssr152711 18 31605553 to 31605561 8 - TSS region transcription start site region 152711
Tssr152712 18 31607521 to 31607527 6 - TSS region transcription start site region 152712
Cpgi9788 18 31609274 to 31610209 935 CpG island CpG island 9788
B930094E09Rik 18 31609512 to 31610751 1239 + unclassified gene RIKEN cDNA B930094E09 gene
Tssr152713 18 31609893 to 31609927 34 - TSS region transcription start site region 152713
Tssr152714 18 31610508 to 31610513 5 - TSS region transcription start site region 152714
Tssr152715 18 31610516 to 31610546 30 - TSS region transcription start site region 152715
Tssr150347 18 31619498 to 31619509 11 + TSS region transcription start site region 150347
3110038A09Rik 18 31633272 to 31633902 630 unclassified gene RIKEN cDNA 3110038A09 gene
Cpgi9789 18 31633837 to 31635455 1618 CpG island CpG island 9789
Tssr150348 18 31634316 to 31634363 47 + TSS region transcription start site region 150348
Tssr150349 18 31634368 to 31634371 3 + TSS region transcription start site region 150349
Sap130 18 31634371 to 31723061 88690 + protein coding gene Sin3A associated protein
Tssr150350 18 31634374 to 31634390 16 + TSS region transcription start site region 150350
Tssr152716 18 31634769 to 31634811 42 - TSS region transcription start site region 152716
Tssr150351 18 31635074 to 31635138 64 + TSS region transcription start site region 150351
Tssr150352 18 31698650 to 31698659 9 + TSS region transcription start site region 150352
Gm50060 18 31738715 to 31739039 324 + pseudogene predicted gene, 50060
Cpgi9790 18 31759201 to 31760638 1437 CpG island CpG island 9790
Tssr150353 18 31759817 to 31759851 34 + TSS region transcription start site region 150353
Ammecr1l 18 31759826 to 31782743 22917 + protein coding gene AMME chromosomal region gene 1-like
Tssr150354 18 31759854 to 31759868 14 + TSS region transcription start site region 150354
Tssr150355 18 31759888 to 31759973 85 + TSS region transcription start site region 150355
Tssr150356 18 31759976 to 31760003 27 + TSS region transcription start site region 150356
Tssr150357 18 31760010 to 31760034 24 + TSS region transcription start site region 150357
Tssr150358 18 31760581 to 31760656 75 + TSS region transcription start site region 150358
Tssr150359 18 31771953 to 31771988 35 + TSS region transcription start site region 150359
Tssr150360 18 31775851 to 31775852 1 + TSS region transcription start site region 150360
Tssr150361 18 31777404 to 31777416 12 + TSS region transcription start site region 150361
Tssr150362 18 31777484 to 31777487 3 + TSS region transcription start site region 150362
Tssr150363 18 31780711 to 31780739 28 + TSS region transcription start site region 150363
Gm26533 18 31781226 to 31789045 7819 - lincRNA gene predicted gene, 26533
Cpgi9791 18 31788850 to 31789389 539 CpG island CpG island 9791
Tssr150364 18 31789120 to 31789171 51 + TSS region transcription start site region 150364
Polr2d 18 31789159 to 31796701 7542 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide D
Cpgi9792 18 31803764 to 31804679 915 CpG island CpG island 9792
Tssr150365 18 31804084 to 31804120 36 + TSS region transcription start site region 150365
Wdr33 18 31804090 to 31907397 103307 + protein coding gene WD repeat domain 33
Gm6665 18 31819865 to 31820413 548 - pseudogene predicted gene 6665
Tssr150366 18 31857040 to 31857049 9 + TSS region transcription start site region 150366
Tssr150367 18 31857074 to 31857085 11 + TSS region transcription start site region 150367
Gm26823 18 31859082 to 31861764 2682 - lincRNA gene predicted gene, 26823
Tssr150368 18 31860515 to 31860530 15 + TSS region transcription start site region 150368
Tssr150369 18 31860610 to 31860625 15 + TSS region transcription start site region 150369
Tssr150370 18 31881241 to 31881251 10 + TSS region transcription start site region 150370
Tssr5267 18 31903516 to 31903517 1 - TSS region transcription start site region 5267
Sft2d3 18 31909098 to 31911824 2726 - protein coding gene SFT2 domain containing 3
Cpgi9793 18 31910232 to 31911492 1260 CpG island CpG island 9793
Tssr150371 18 31910762 to 31910848 86 + TSS region transcription start site region 150371
1810036N14Rik 18 31910819 to 31911918 1099 unclassified gene RIKEN cDNA 1810036N14 gene
Tssr152717 18 31911250 to 31911278 28 - TSS region transcription start site region 152717