Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:27782200-31126107

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq18 18 18132472 to 30437766 12305294 QTL post-weaning body weight QTL 18
Pwbwq17 18 18132472 to 30437766 12305294 QTL post-weaning body weight QTL 17
Ogrq6 18 18132472 to 30437766 12305294 QTL overall growth rate QTL 6
Gm33674 18 27809732 to 27827685 17953 + lncRNA gene predicted gene, 33674
Gm33805 18 28029775 to 28033519 3744 - lncRNA gene predicted gene, 33805
Gm33860 18 28070140 to 28161660 91520 - lncRNA gene predicted gene, 33860
Cpgi9784 18 28077642 to 28077962 320 CpG island CpG island 9784
Gm5064 18 28187110 to 28188817 1707 - pseudogene predicted gene 5064
Tssr150338 18 28189064 to 28189086 22 + TSS region transcription start site region 150338
Gm24246 18 28309760 to 28309891 131 + snoRNA gene predicted gene, 24246
Tssr150339 18 28381304 to 28381307 3 + TSS region transcription start site region 150339
Gm6643 18 28432889 to 28435355 2466 + pseudogene predicted gene 6643
D18Mit95 18 28452059 to 28452170 111 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 95
Gm34658 18 28534009 to 28534370 361 - pseudogene predicted gene, 34658
4930474G06Rik 18 28560164 to 28998176 438012 + lncRNA gene RIKEN cDNA 4930474G06 gene
Gm20096 18 28602648 to 28602989 341 - pseudogene predicted gene, 20096
BC051408 18 28711861 to 28726847 14986 + unclassified gene cDNA sequence BC051408
D18Mit119 18 28785262 to 28785410 148 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 119
Gm33948 18 28872188 to 28924124 51936 + lncRNA gene predicted gene, 33948
Gm34743 18 29245347 to 29246439 1092 + pseudogene predicted gene, 34743
Tssr150340 18 29333414 to 29333426 12 + TSS region transcription start site region 150340
Cpgi9785 18 29344742 to 29344932 190 CpG island CpG island 9785
4930578E11Rik 18 29396716 to 29496416 99700 - lncRNA gene RIKEN cDNA 4930578E11 gene
Tssr150341 18 29442185 to 29442204 19 + TSS region transcription start site region 150341
4930527G23Rik 18 29442200 to 29466107 23907 + lncRNA gene RIKEN cDNA 4930527G23 gene
Tssr152688 18 29496513 to 29496519 6 - TSS region transcription start site region 152688
Tssr152689 18 29496545 to 29496555 10 - TSS region transcription start site region 152689
Tssr152690 18 29496561 to 29496576 15 - TSS region transcription start site region 152690
Gm34136 18 29529886 to 29539725 9839 - lncRNA gene predicted gene, 34136
Gm34182 18 29633695 to 29639805 6110 - lncRNA gene predicted gene, 34182
Gm7917 18 29657054 to 29657596 542 - pseudogene predicted gene 7917
D18Mit86 18 29660341 to 29660534 193 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 86
Tssr5264 18 29733686 to 29733691 5 + TSS region transcription start site region 5264
D18Mit175 18 29746671 to 29746785 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 175
Gm41680 18 29759854 to 29774606 14752 - lncRNA gene predicted gene, 41680
Tssr5265 18 29785897 to 29785898 1 - TSS region transcription start site region 5265
D18Mit233 18 29801485 to 29801606 121 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 233
Tssr152691 18 30146550 to 30146551 1 - TSS region transcription start site region 152691
Gm34327 18 30198980 to 30238982 40002 - lncRNA gene predicted gene, 34327
D18Dcr6 18 30234888 to 30234985 97 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 6
Gm49980 18 30267249 to 30272133 4884 + lincRNA gene predicted gene, 49980
Cpgi9786 18 30272690 to 30273296 606 CpG island CpG island 9786
Pik3c3 18 30272747 to 30348126 75379 + protein coding gene phosphatidylinositol 3-kinase catalytic subunit type 3
Tssr150342 18 30272829 to 30272931 102 + TSS region transcription start site region 150342
Tssr150343 18 30283832 to 30283844 12 + TSS region transcription start site region 150343
Tssr150344 18 30322421 to 30322423 2 + TSS region transcription start site region 150344
Gm7926 18 30419686 to 30420060 374 - pseudogene predicted gene 7926
Tssr152692 18 30420105 to 30420111 6 - TSS region transcription start site region 152692
Gm7930 18 30428256 to 30429861 1605 - pseudogene predicted gene 7930
D18Mit234 18 30456695 to 30456836 141 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 234
Rpl29-ps5 18 30459082 to 30459544 462 - pseudogene ribosomal protein L29, pseudogene 5
Tssr152693 18 30459594 to 30459600 6 - TSS region transcription start site region 152693
Gm22870 18 30476407 to 30476518 111 + snoRNA gene predicted gene, 22870
Gm7936 18 30495004 to 30495373 369 - pseudogene predicted pseudogene 7936
Cath6 18 30504073 to 30504073 0 QTL carotid atherosclerosis 6
Tssr5266 18 30524667 to 30524672 5 - TSS region transcription start site region 5266
Gm34572 18 30531379 to 30543204 11825 + lncRNA gene predicted gene, 34572
D18Mit159 18 30575417 to 30575642 225 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 159
Gm41780 18 30608537 to 30608890 353 - pseudogene predicted gene, 41780
Tssr152694 18 30609055 to 30609056 1 - TSS region transcription start site region 152694
Gm20952 18 30613587 to 30615016 1429 + pseudogene predicted gene, 20952
D18Mit225 18 30615771 to 30615886 115 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 225
Rit2 18 30974314 to 31317128 342814 - protein coding gene Ras-like without CAAX 2
Tssr152695 18 30975268 to 30975279 11 - TSS region transcription start site region 152695
Gm18651 18 30979522 to 30980724 1202 - pseudogene predicted gene, 18651