Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:25396730-28438096

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
AW554918 18 25168999 to 25467321 298322 + protein coding gene expressed sequence AW554918
Tssr152666 18 25422027 to 25422029 2 - TSS region transcription start site region 152666
Celf4 18 25477632 to 25754157 276525 - protein coding gene CUGBP, Elav-like family member 4
Tssr152667 18 25477919 to 25477930 11 - TSS region transcription start site region 152667
Cpgi9776 18 25478407 to 25478655 248 CpG island CpG island 9776
Tssr152668 18 25478996 to 25478999 3 - TSS region transcription start site region 152668
Tssr152669 18 25479304 to 25479315 11 - TSS region transcription start site region 152669
Tssr152670 18 25479511 to 25479522 11 - TSS region transcription start site region 152670
Cpgi9777 18 25486512 to 25487578 1066 CpG island CpG island 9777
Tssr152671 18 25486970 to 25487050 80 - TSS region transcription start site region 152671
Cpgi9778 18 25504528 to 25505494 966 CpG island CpG island 9778
Gm32825 18 25505028 to 25508052 3024 + lncRNA gene predicted gene, 32825
Tssr152672 18 25505051 to 25505077 26 - TSS region transcription start site region 152672
Tssr150330 18 25568135 to 25568142 7 + TSS region transcription start site region 150330
Cpgi9779 18 25590236 to 25590549 313 CpG island CpG island 9779
5330430C04Rik 18 25591304 to 25592722 1418 unclassified gene RIKEN cDNA 5330430C04 gene
Gm3227 18 25597490 to 25603833 6343 + antisense lncRNA gene predicted gene 3227
Gm25845 18 25598145 to 25598454 309 - unclassified non-coding RNA gene predicted gene, 25845
Cpgi9780 18 25621889 to 25622194 305 CpG island CpG island 9780
D18Mit69 18 25642713 to 25642859 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 69
D18Mit224 18 25652688 to 25652812 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 224
Cpgi9781 18 25678752 to 25679806 1054 CpG island CpG island 9781
Tssr152673 18 25679453 to 25679501 48 - TSS region transcription start site region 152673
Tssr152674 18 25679510 to 25679534 24 - TSS region transcription start site region 152674
Tssr152675 18 25679580 to 25679589 9 - TSS region transcription start site region 152675
Tssr152676 18 25679673 to 25679688 15 - TSS region transcription start site region 152676
Tssr152677 18 25680191 to 25680203 12 - TSS region transcription start site region 152677
Tssr152678 18 25684793 to 25684797 4 - TSS region transcription start site region 152678
0710001A04Rik 18 25713770 to 25719147 5377 + antisense lncRNA gene RIKEN cDNA 0710001A04 gene
Cpgi9782 18 25752916 to 25754688 1772 CpG island CpG island 9782
Tssr150331 18 25753256 to 25753273 17 + TSS region transcription start site region 150331
Tssr152679 18 25753486 to 25753498 12 - TSS region transcription start site region 152679
Tssr152680 18 25753582 to 25753600 18 - TSS region transcription start site region 152680
Tssr152681 18 25753611 to 25753632 21 - TSS region transcription start site region 152681
Tssr152682 18 25753665 to 25753734 69 - TSS region transcription start site region 152682
Tssr152683 18 25753852 to 25753927 75 - TSS region transcription start site region 152683
Tssr152684 18 25754116 to 25754176 60 - TSS region transcription start site region 152684
Gm32896 18 25754246 to 25779387 25141 + lncRNA gene predicted gene, 32896
Tssr152685 18 25754326 to 25754334 8 - TSS region transcription start site region 152685
Tssr150332 18 25754381 to 25754387 6 + TSS region transcription start site region 150332
Tssr150333 18 25754503 to 25754507 4 + TSS region transcription start site region 150333
Cpgi9783 18 25755002 to 25755616 614 CpG island CpG island 9783
Gm7847 18 25823581 to 25824357 776 - pseudogene predicted gene 7847
Tssr150334 18 25839101 to 25839115 14 + TSS region transcription start site region 150334
Gm33228 18 26007557 to 26215653 208096 + lncRNA gene predicted gene, 33228
D18Mit147 18 26267914 to 26268063 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 147
D18Mit147.1 18 26268043 to 26268177 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 147.1
Gm41679 18 26268359 to 26329872 61513 + lncRNA gene predicted gene, 41679
D18Mit85 18 26473645 to 26473776 131 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 85
Gm23674 18 26495435 to 26495565 130 + snoRNA gene predicted gene, 23674
Gm33621 18 26816959 to 26857098 40139 + lncRNA gene predicted gene, 33621
D18Mit174 18 26889974 to 26890085 111 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 174
4930461L14Rik 18 26916730 to 26918096 1366 unclassified gene RIKEN cDNA 4930461L14 gene
Gm49976 18 26916731 to 26918097 1366 - lincRNA gene predicted gene, 49976
Tssr152686 18 26918063 to 26918072 9 - TSS region transcription start site region 152686
Gm26106 18 26928102 to 26928329 227 - ribozyme gene predicted gene, 26106
Gm18089 18 27008672 to 27009301 629 + pseudogene predicted gene, 18089
Gm7874 18 27049056 to 27049415 359 + pseudogene predicted gene 7874
Gm49977 18 27090843 to 27091187 344 - pseudogene predicted gene, 49977
Tssr152687 18 27129959 to 27129962 3 - TSS region transcription start site region 152687
Tssr150335 18 27336851 to 27336854 3 + TSS region transcription start site region 150335
D18Mit98 18 27541407 to 27541515 108 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 98
Tssr150336 18 27598582 to 27598585 3 + TSS region transcription start site region 150336
Gm7729 18 27598644 to 27599756 1112 + pseudogene predicted gene 7729
D18Mit62 18 27653324 to 27653478 154 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 62
Gm49978 18 27688151 to 27706672 18521 - lincRNA gene predicted gene, 49978
Tssr5263 18 27705572 to 27705573 1 + TSS region transcription start site region 5263
Tssr150337 18 27745614 to 27745619 5 + TSS region transcription start site region 150337
Gm33674 18 27809732 to 27827685 17953 + lncRNA gene predicted gene, 33674
Gm33805 18 28029775 to 28033519 3744 - lncRNA gene predicted gene, 33805
Gm33860 18 28070140 to 28161660 91520 - lncRNA gene predicted gene, 33860
Cpgi9784 18 28077642 to 28077962 320 CpG island CpG island 9784
Gm5064 18 28187110 to 28188817 1707 - pseudogene predicted gene 5064
Tssr150338 18 28189064 to 28189086 22 + TSS region transcription start site region 150338
Gm24246 18 28309760 to 28309891 131 + snoRNA gene predicted gene, 24246
Tssr150339 18 28381304 to 28381307 3 + TSS region transcription start site region 150339
Gm6643 18 28432889 to 28435355 2466 + pseudogene predicted gene 6643