Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:24233691-25121575

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galnt1 18 24205344 to 24286816 81472 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 1
Tssr150291 18 24238239 to 24238267 28 + TSS region transcription start site region 150291
Tssr5261 18 24257354 to 24257380 26 + TSS region transcription start site region 5261
Gm7701 18 24257378 to 24258856 1478 + pseudogene predicted gene 7701
Gm38565 18 24289768 to 24315956 26188 + lncRNA gene predicted gene, 38565
Gm38410 18 24339366 to 24344630 5264 + unclassified gene predicted gene, 38410
Cpgi9768 18 24363641 to 24363807 166 CpG island CpG island 9768
D18Mit231 18 24371582 to 24371700 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 231
Tssr150292 18 24397421 to 24397424 3 + TSS region transcription start site region 150292
Gm32547 18 24426143 to 24467576 41433 - lncRNA gene predicted gene, 32547
Mir187 18 24429110 to 24429170 60 - miRNA gene microRNA 187
Tssr152652 18 24433507 to 24433510 3 - TSS region transcription start site region 152652
Tssr152653 18 24439101 to 24439106 5 - TSS region transcription start site region 152653
Gm32436 18 24465939 to 24467760 1821 + protein coding gene predicted gene, 32436
Cpgi9769 18 24466847 to 24467842 995 CpG island CpG island 9769
Cpgi9770 18 24470597 to 24471148 551 CpG island CpG island 9770
Tssr150293 18 24470798 to 24470814 16 + TSS region transcription start site region 150293
Tssr150294 18 24470844 to 24470922 78 + TSS region transcription start site region 150294
2700062C07Rik 18 24470871 to 24477767 6896 + protein coding gene RIKEN cDNA 2700062C07 gene
Tssr150295 18 24474917 to 24474923 6 + TSS region transcription start site region 150295
Tssr152654 18 24477196 to 24477203 7 - TSS region transcription start site region 152654
2610028J07Rik 18 24482687 to 24484557 1870 unclassified gene RIKEN cDNA 2610028J07 gene
Rprd1a 18 24484960 to 24530204 45244 - protein coding gene regulation of nuclear pre-mRNA domain containing 1A
Cpgi9771 18 24529367 to 24530416 1049 CpG island CpG island 9771
Tssr152655 18 24530018 to 24530033 15 - TSS region transcription start site region 152655
Tssr152656 18 24530052 to 24530129 77 - TSS region transcription start site region 152656
Tssr152657 18 24530203 to 24530245 42 - TSS region transcription start site region 152657
Gm23606 18 24558602 to 24558722 120 + miRNA gene predicted gene, 23606
Slc39a6 18 24579881 to 24603817 23936 - protein coding gene solute carrier family 39 (metal ion transporter), member 6
Cpgi9772 18 24602900 to 24604341 1441 CpG island CpG island 9772
Tssr152658 18 24603446 to 24603459 13 - TSS region transcription start site region 152658
Tssr152659 18 24603464 to 24603530 66 - TSS region transcription start site region 152659
Tssr150296 18 24603556 to 24603576 20 + TSS region transcription start site region 150296
Tssr152660 18 24603768 to 24603785 17 - TSS region transcription start site region 152660
Tssr152661 18 24603791 to 24603843 52 - TSS region transcription start site region 152661
Elp2 18 24603894 to 24638830 34936 + protein coding gene elongator acetyltransferase complex subunit 2
Tssr150297 18 24603952 to 24603972 20 + TSS region transcription start site region 150297
Tssr150298 18 24603975 to 24603993 18 + TSS region transcription start site region 150298
Tssr150299 18 24606624 to 24606630 6 + TSS region transcription start site region 150299
Cpgi9773 18 24653263 to 24654283 1020 CpG island CpG island 9773
Mocos 18 24653691 to 24701575 47884 + protein coding gene molybdenum cofactor sulfurase
Tssr150300 18 24653829 to 24653844 15 + TSS region transcription start site region 150300
Tssr150301 18 24653856 to 24653883 27 + TSS region transcription start site region 150301
Tssr150302 18 24653902 to 24653913 11 + TSS region transcription start site region 150302
n-R5s23 18 24686168 to 24686282 114 - rRNA gene nuclear encoded rRNA 5S 23
Tssr150303 18 24708617 to 24708633 16 + TSS region transcription start site region 150303
Fhod3 18 24708623 to 25133501 424878 + protein coding gene formin homology 2 domain containing 3
Cpgi9774 18 24708885 to 24710479 1594 CpG island CpG island 9774
Gm9955 18 24709040 to 24709348 308 - protein coding gene predicted gene 9955
Tssr150304 18 24709254 to 24709289 35 + TSS region transcription start site region 150304
Tssr150305 18 24709310 to 24709325 15 + TSS region transcription start site region 150305
Tssr150306 18 24709436 to 24709447 11 + TSS region transcription start site region 150306
Tssr150307 18 24709463 to 24709466 3 + TSS region transcription start site region 150307
Tssr150308 18 24709474 to 24709502 28 + TSS region transcription start site region 150308
Tssr150309 18 24709507 to 24709520 13 + TSS region transcription start site region 150309
Tssr150310 18 24710371 to 24710374 3 + TSS region transcription start site region 150310
Tssr150311 18 24746578 to 24746591 13 + TSS region transcription start site region 150311
Tssr150312 18 24746620 to 24746631 11 + TSS region transcription start site region 150312
Tssr150313 18 24746642 to 24746654 12 + TSS region transcription start site region 150313
Gm24294 18 24761163 to 24761439 276 + unclassified non-coding RNA gene predicted gene, 24294
Tssr150314 18 24941408 to 24941429 21 + TSS region transcription start site region 150314
Tssr150315 18 24941457 to 24941466 9 + TSS region transcription start site region 150315
Hrtfm7 18 24953907 to 24954049 142 QTL heart failure modifier 7
D18Mit22 18 24953907 to 24954049 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 22
Tssr150316 18 25016047 to 25016084 37 + TSS region transcription start site region 150316
Tssr150317 18 25019185 to 25019189 4 + TSS region transcription start site region 150317
Tssr150318 18 25037072 to 25037074 2 + TSS region transcription start site region 150318
Tssr150319 18 25045040 to 25045046 6 + TSS region transcription start site region 150319
Tssr150320 18 25065669 to 25065697 28 + TSS region transcription start site region 150320
Tssr150321 18 25065805 to 25065820 15 + TSS region transcription start site region 150321
Tssr150322 18 25065840 to 25065851 11 + TSS region transcription start site region 150322
Tssr150323 18 25066080 to 25066092 12 + TSS region transcription start site region 150323
Tssr150324 18 25066123 to 25066136 13 + TSS region transcription start site region 150324