Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:23570709-24840720

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dtna 18 23415135 to 23659715 244580 + protein coding gene dystrobrevin alpha
D18Mit172 18 23594669 to 23594774 105 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 172
Gm47898 18 23645326 to 23651837 6511 - antisense lncRNA gene predicted gene, 47898
Tssr5257 18 23715247 to 23715272 25 + TSS region transcription start site region 5257
Gm15972 18 23750447 to 23752305 1858 - antisense lncRNA gene predicted gene 15972
Cpgi9757 18 23752161 to 23753020 859 CpG island CpG island 9757
Mapre2 18 23752333 to 23893861 141528 + protein coding gene microtubule-associated protein, RP/EB family, member 2
Tssr150258 18 23752361 to 23752401 40 + TSS region transcription start site region 150258
Cpgi9758 18 23753256 to 23753453 197 CpG island CpG island 9758
Cpgi9759 18 23753543 to 23753996 453 CpG island CpG island 9759
Tssr150259 18 23753672 to 23753688 16 + TSS region transcription start site region 150259
Tssr150260 18 23753708 to 23753719 11 + TSS region transcription start site region 150260
Tssr150261 18 23753735 to 23753759 24 + TSS region transcription start site region 150261
Tssr150262 18 23771713 to 23771738 25 + TSS region transcription start site region 150262
Mir6360 18 23774864 to 23774989 125 - miRNA gene microRNA 6360
Tssr150263 18 23796839 to 23796840 1 + TSS region transcription start site region 150263
Cpgi9760 18 23803602 to 23804544 942 CpG island CpG island 9760
Tssr150264 18 23803962 to 23804054 92 + TSS region transcription start site region 150264
Tssr5258 18 23805747 to 23805767 20 - TSS region transcription start site region 5258
Tssr152638 18 23805771 to 23805779 8 - TSS region transcription start site region 152638
Gm23207 18 23817270 to 23817371 101 - snRNA gene predicted gene, 23207
Tssr150265 18 23858067 to 23858091 24 + TSS region transcription start site region 150265
Tssr152639 18 23867569 to 23867571 2 - TSS region transcription start site region 152639
Tssr150266 18 23880453 to 23880454 1 + TSS region transcription start site region 150266
Tssr150267 18 23883532 to 23883553 21 + TSS region transcription start site region 150267
Tssr150268 18 23883575 to 23883591 16 + TSS region transcription start site region 150268
Tssr5259 18 23891176 to 23891214 38 + TSS region transcription start site region 5259
Tssr150269 18 23891467 to 23891479 12 + TSS region transcription start site region 150269
Tssr150270 18 23913365 to 23913371 6 + TSS region transcription start site region 150270
Gm38559 18 23916865 to 23928728 11863 + lncRNA gene predicted gene, 38559
Tssr5260 18 23917054 to 23917084 30 + TSS region transcription start site region 5260
Tssr150271 18 23943850 to 23943853 3 + TSS region transcription start site region 150271
Gm46611 18 23943897 to 23944122 225 + pseudogene predicted gene, 46611
Tssr150272 18 23944922 to 23944954 32 + TSS region transcription start site region 150272
Rpl19-ps7 18 23944959 to 23945550 591 + pseudogene ribosomal protein L19, pseudogene 7
Tssr152640 18 23952253 to 23952268 15 - TSS region transcription start site region 152640
Cpgi9761 18 23954285 to 23955313 1028 CpG island CpG island 9761
Tssr152641 18 23954570 to 23954607 37 - TSS region transcription start site region 152641
Tssr150273 18 23954668 to 23954704 36 + TSS region transcription start site region 150273
Zfp397 18 23954692 to 23964673 9981 + protein coding gene zinc finger protein 397
Tssr150274 18 23954706 to 23954717 11 + TSS region transcription start site region 150274
Tssr150275 18 23954848 to 23954873 25 + TSS region transcription start site region 150275
Tssr150276 18 23954876 to 23954922 46 + TSS region transcription start site region 150276
Zscan30 18 23966680 to 23987226 20546 - protein coding gene zinc finger and SCAN domain containing 30
Cpgi9762 18 23986940 to 23987334 394 CpG island CpG island 9762
Tssr152642 18 23987235 to 23987282 47 - TSS region transcription start site region 152642
Cpgi9763 18 23989551 to 23989706 155 CpG island CpG island 9763
Zfp35 18 23989634 to 24005371 15737 + protein coding gene zinc finger protein 35
Tssr150277 18 23989652 to 23989694 42 + TSS region transcription start site region 150277
Tssr150278 18 23999345 to 23999352 7 + TSS region transcription start site region 150278
Zfp24 18 24009702 to 24020810 11108 - protein coding gene zinc finger protein 24
Cpgi9764 18 24020187 to 24021247 1060 CpG island CpG island 9764
Tssr152643 18 24020307 to 24020364 57 - TSS region transcription start site region 152643
Tssr152644 18 24020749 to 24020813 64 - TSS region transcription start site region 152644
Cpgi9765 18 24042932 to 24043124 192 CpG island CpG island 9765
Gm18084 18 24044333 to 24044958 625 - pseudogene predicted gene, 18084
Gm18085 18 24081092 to 24081925 833 - pseudogene predicted gene, 18085
Tssr150279 18 24088988 to 24088992 4 + TSS region transcription start site region 150279
Gm41677 18 24100531 to 24104675 4144 - lncRNA gene predicted gene, 41677
Ino80c 18 24104761 to 24121819 17058 - protein coding gene INO80 complex subunit C
Tssr152645 18 24112042 to 24112076 34 - TSS region transcription start site region 152645
Tssr152646 18 24112077 to 24112087 10 - TSS region transcription start site region 152646
Tssr152647 18 24112089 to 24112108 19 - TSS region transcription start site region 152647
Cpgi9766 18 24121559 to 24122070 511 CpG island CpG island 9766
Tssr150280 18 24121614 to 24121645 31 + TSS region transcription start site region 150280
Tssr152648 18 24121810 to 24121881 71 - TSS region transcription start site region 152648
Tssr150281 18 24154560 to 24154567 7 + TSS region transcription start site region 150281
Tssr150282 18 24168636 to 24168643 7 + TSS region transcription start site region 150282
Tssr152649 18 24178835 to 24178875 40 - TSS region transcription start site region 152649
Tssr152650 18 24178890 to 24178907 17 - TSS region transcription start site region 152650
Cpgi9767 18 24205020 to 24206755 1735 CpG island CpG island 9767
Tssr150283 18 24205303 to 24205348 45 + TSS region transcription start site region 150283
Galnt1 18 24205344 to 24286816 81472 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 1
Tssr150284 18 24205362 to 24205379 17 + TSS region transcription start site region 150284
Tssr150285 18 24205607 to 24205632 25 + TSS region transcription start site region 150285
Tssr150286 18 24205695 to 24205704 9 + TSS region transcription start site region 150286
Tssr150287 18 24205709 to 24205720 11 + TSS region transcription start site region 150287
Tssr150288 18 24205722 to 24205762 40 + TSS region transcription start site region 150288
Tssr152651 18 24205851 to 24205860 9 - TSS region transcription start site region 152651
Tssr150289 18 24205937 to 24206002 65 + TSS region transcription start site region 150289
Tssr150290 18 24206015 to 24206038 23 + TSS region transcription start site region 150290
Tssr150291 18 24238239 to 24238267 28 + TSS region transcription start site region 150291
Tssr5261 18 24257354 to 24257380 26 + TSS region transcription start site region 5261
Gm7701 18 24257378 to 24258856 1478 + pseudogene predicted gene 7701
Gm38565 18 24289768 to 24315956 26188 + lncRNA gene predicted gene, 38565
Gm38410 18 24339366 to 24344630 5264 + unclassified gene predicted gene, 38410
Cpgi9768 18 24363641 to 24363807 166 CpG island CpG island 9768
D18Mit231 18 24371582 to 24371700 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 231
Tssr150292 18 24397421 to 24397424 3 + TSS region transcription start site region 150292
Gm32547 18 24426143 to 24467576 41433 - lncRNA gene predicted gene, 32547
Mir187 18 24429110 to 24429170 60 - miRNA gene microRNA 187
Tssr152652 18 24433507 to 24433510 3 - TSS region transcription start site region 152652
Tssr152653 18 24439101 to 24439106 5 - TSS region transcription start site region 152653
Gm32436 18 24465939 to 24467760 1821 + protein coding gene predicted gene, 32436
Cpgi9769 18 24466847 to 24467842 995 CpG island CpG island 9769
Cpgi9770 18 24470597 to 24471148 551 CpG island CpG island 9770
Tssr150293 18 24470798 to 24470814 16 + TSS region transcription start site region 150293
Tssr150294 18 24470844 to 24470922 78 + TSS region transcription start site region 150294
2700062C07Rik 18 24470871 to 24477767 6896 + protein coding gene RIKEN cDNA 2700062C07 gene
Tssr150295 18 24474917 to 24474923 6 + TSS region transcription start site region 150295
Tssr152654 18 24477196 to 24477203 7 - TSS region transcription start site region 152654
2610028J07Rik 18 24482687 to 24484557 1870 unclassified gene RIKEN cDNA 2610028J07 gene
Rprd1a 18 24484960 to 24530204 45244 - protein coding gene regulation of nuclear pre-mRNA domain containing 1A
Cpgi9771 18 24529367 to 24530416 1049 CpG island CpG island 9771
Tssr152655 18 24530018 to 24530033 15 - TSS region transcription start site region 152655
Tssr152656 18 24530052 to 24530129 77 - TSS region transcription start site region 152656
Tssr152657 18 24530203 to 24530245 42 - TSS region transcription start site region 152657
Gm23606 18 24558602 to 24558722 120 + miRNA gene predicted gene, 23606
Slc39a6 18 24579881 to 24603817 23936 - protein coding gene solute carrier family 39 (metal ion transporter), member 6
Cpgi9772 18 24602900 to 24604341 1441 CpG island CpG island 9772
Tssr152658 18 24603446 to 24603459 13 - TSS region transcription start site region 152658
Tssr152659 18 24603464 to 24603530 66 - TSS region transcription start site region 152659
Tssr150296 18 24603556 to 24603576 20 + TSS region transcription start site region 150296
Tssr152660 18 24603768 to 24603785 17 - TSS region transcription start site region 152660
Tssr152661 18 24603791 to 24603843 52 - TSS region transcription start site region 152661
Elp2 18 24603894 to 24638830 34936 + protein coding gene elongator acetyltransferase complex subunit 2
Tssr150297 18 24603952 to 24603972 20 + TSS region transcription start site region 150297
Tssr150298 18 24603975 to 24603993 18 + TSS region transcription start site region 150298
Tssr150299 18 24606624 to 24606630 6 + TSS region transcription start site region 150299
Cpgi9773 18 24653263 to 24654283 1020 CpG island CpG island 9773
Mocos 18 24653691 to 24701575 47884 + protein coding gene molybdenum cofactor sulfurase
Tssr150300 18 24653829 to 24653844 15 + TSS region transcription start site region 150300
Tssr150301 18 24653856 to 24653883 27 + TSS region transcription start site region 150301
Tssr150302 18 24653902 to 24653913 11 + TSS region transcription start site region 150302
n-R5s23 18 24686168 to 24686282 114 - rRNA gene nuclear encoded rRNA 5S 23
Tssr150303 18 24708617 to 24708633 16 + TSS region transcription start site region 150303
Fhod3 18 24708623 to 25133501 424878 + protein coding gene formin homology 2 domain containing 3
Cpgi9774 18 24708885 to 24710479 1594 CpG island CpG island 9774
Gm9955 18 24709040 to 24709348 308 - protein coding gene predicted gene 9955
Tssr150304 18 24709254 to 24709289 35 + TSS region transcription start site region 150304
Tssr150305 18 24709310 to 24709325 15 + TSS region transcription start site region 150305
Tssr150306 18 24709436 to 24709447 11 + TSS region transcription start site region 150306
Tssr150307 18 24709463 to 24709466 3 + TSS region transcription start site region 150307
Tssr150308 18 24709474 to 24709502 28 + TSS region transcription start site region 150308
Tssr150309 18 24709507 to 24709520 13 + TSS region transcription start site region 150309
Tssr150310 18 24710371 to 24710374 3 + TSS region transcription start site region 150310
Tssr150311 18 24746578 to 24746591 13 + TSS region transcription start site region 150311
Tssr150312 18 24746620 to 24746631 11 + TSS region transcription start site region 150312
Tssr150313 18 24746642 to 24746654 12 + TSS region transcription start site region 150313
Gm24294 18 24761163 to 24761439 276 + unclassified non-coding RNA gene predicted gene, 24294