Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:21273181-24461653

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Garem1 18 21127342 to 21300139 172797 - protein coding gene GRB2 associated regulator of MAPK1 subtype 1
Cpgi9749 18 21299368 to 21300837 1469 CpG island CpG island 9749
Tssr152615 18 21299946 to 21299958 12 - TSS region transcription start site region 152615
Tssr152616 18 21300080 to 21300091 11 - TSS region transcription start site region 152616
Tssr152617 18 21300116 to 21300123 7 - TSS region transcription start site region 152617
Tssr152618 18 21300129 to 21300168 39 - TSS region transcription start site region 152618
Gm24372 18 21302198 to 21302307 109 + unclassified non-coding RNA gene predicted gene, 24372
Gm50049 18 21304714 to 21318146 13432 - lincRNA gene predicted gene, 50049
Cpgi9750 18 21317721 to 21317893 172 CpG island CpG island 9750
Gm7758 18 21317769 to 21318253 484 + pseudogene predicted gene 7758
Gm41675 18 21318771 to 21328075 9304 + lncRNA gene predicted gene, 41675
Gm50052 18 21332106 to 21332679 573 - pseudogene predicted gene, 50052
Gm22886 18 21380825 to 21380931 106 - snRNA gene predicted gene, 22886
Tssr152619 18 21421989 to 21421993 4 - TSS region transcription start site region 152619
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
D18Mit68 18 21435625 to 21435737 112 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 68
Gm31646 18 21480493 to 21649604 169111 + lncRNA gene predicted gene, 31646
Gm4837 18 21492516 to 21494099 1583 - pseudogene predicted gene 4837
baw 18 21513305 to 46408598 24895293 heritable phenotypic marker black and white
D18Mit111 18 21513305 to 21513420 115 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 111
Idd21.3 18 21513420 to 6108404 -15405016 QTL insulin dependent diabetes susceptibility 21.3
Klhl14 18 21550377 to 21654718 104341 - protein coding gene kelch-like 14
D18Mit82 18 21570676 to 21570810 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 82
Tssr150231 18 21651389 to 21651406 17 + TSS region transcription start site region 150231
Cpgi9751 18 21651413 to 21653258 1845 CpG island CpG island 9751
Tssr150232 18 21651431 to 21651443 12 + TSS region transcription start site region 150232
Tssr150233 18 21651450 to 21651466 16 + TSS region transcription start site region 150233
4930426D05Rik 18 21651565 to 21656107 4542 + antisense lncRNA gene RIKEN cDNA 4930426D05 gene
Tssr152620 18 21651813 to 21651843 30 - TSS region transcription start site region 152620
Tssr152621 18 21651999 to 21652015 16 - TSS region transcription start site region 152621
Tssr152622 18 21652077 to 21652089 12 - TSS region transcription start site region 152622
Tssr152623 18 21652091 to 21652120 29 - TSS region transcription start site region 152623
Tssr152624 18 21652196 to 21652207 11 - TSS region transcription start site region 152624
Tssr150234 18 21652274 to 21652323 49 + TSS region transcription start site region 150234
Tssr152625 18 21652362 to 21652373 11 - TSS region transcription start site region 152625
Tssr150235 18 21653321 to 21653331 10 + TSS region transcription start site region 150235
Cpgi9752 18 21653587 to 21654087 500 CpG island CpG island 9752
Ccdc178 18 21810897 to 22171396 360499 - protein coding gene coiled coil domain containing 178
Tssr152626 18 22171392 to 22171423 31 - TSS region transcription start site region 152626
Tssr150236 18 22171431 to 22171435 4 + TSS region transcription start site region 150236
Tssr150237 18 22171441 to 22171456 15 + TSS region transcription start site region 150237
4921517O11Rik 18 22171489 to 22173314 1825 unclassified gene RIKEN cDNA 4921517O11 gene
D18Mit27 18 22314612 to 22314751 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 27
Tssr150238 18 22318991 to 22318999 8 + TSS region transcription start site region 150238
Gm5968 18 22319065 to 22319928 863 + pseudogene predicted gene 5968
Gm41676 18 22334840 to 22344110 9270 - lncRNA gene predicted gene, 41676
Cpgi9753 18 22343456 to 22345244 1788 CpG island CpG island 9753
Asxl3 18 22344883 to 22530227 185344 + protein coding gene additional sex combs like 3, transcriptional regulator
Tssr150239 18 22344913 to 22344925 12 + TSS region transcription start site region 150239
Tssr150240 18 22643575 to 22643581 6 + TSS region transcription start site region 150240
Nol4 18 22693181 to 23041653 348472 - protein coding gene nucleolar protein 4
Tssr150241 18 22721607 to 22721612 5 + TSS region transcription start site region 150241
Tssr152627 18 22811713 to 22811718 5 - TSS region transcription start site region 152627
Tssr152628 18 22828517 to 22828521 4 - TSS region transcription start site region 152628
Tssr152629 18 22828538 to 22828551 13 - TSS region transcription start site region 152629
Tssr152630 18 22850738 to 22850759 21 - TSS region transcription start site region 152630
Tssr152631 18 22850780 to 22850795 15 - TSS region transcription start site region 152631
Tssr152632 18 22884252 to 22884256 4 - TSS region transcription start site region 152632
Tssr152633 18 23022829 to 23022841 12 - TSS region transcription start site region 152633
Tssr152634 18 23038658 to 23038676 18 - TSS region transcription start site region 152634
Cpgi9754 18 23038956 to 23040496 1540 CpG island CpG island 9754
Cpgi9755 18 23041086 to 23041918 832 CpG island CpG island 9755
Tssr152635 18 23041553 to 23041566 13 - TSS region transcription start site region 152635
Tssr152636 18 23041611 to 23041622 11 - TSS region transcription start site region 152636
Tssr152637 18 23041641 to 23041671 30 - TSS region transcription start site region 152637
D18Mit93 18 23049162 to 23049307 145 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 93
Gm22495 18 23147094 to 23147219 125 + snoRNA gene predicted gene, 22495
Tssr150242 18 23217122 to 23217125 3 + TSS region transcription start site region 150242
Tssr150243 18 23217175 to 23217186 11 + TSS region transcription start site region 150243
Gm7788 18 23217596 to 23217818 222 + pseudogene predicted gene 7788
Cpgi9756 18 23309910 to 23311161 1251 CpG island CpG island 9756
Tssr150244 18 23310047 to 23310139 92 + TSS region transcription start site region 150244
Tssr150245 18 23310140 to 23310173 33 + TSS region transcription start site region 150245
Tssr150246 18 23310180 to 23310202 22 + TSS region transcription start site region 150246
Tssr150247 18 23333719 to 23333731 12 + TSS region transcription start site region 150247
Tssr150248 18 23352588 to 23352614 26 + TSS region transcription start site region 150248
Tssr150249 18 23352615 to 23352620 5 + TSS region transcription start site region 150249
Tssr150250 18 23395983 to 23395985 2 + TSS region transcription start site region 150250
Dtna 18 23415135 to 23659715 244580 + protein coding gene dystrobrevin alpha
Tssr150251 18 23415162 to 23415215 53 + TSS region transcription start site region 150251
Tssr150252 18 23415400 to 23415454 54 + TSS region transcription start site region 150252
Tssr150253 18 23415484 to 23415492 8 + TSS region transcription start site region 150253
Tssr150254 18 23415568 to 23415583 15 + TSS region transcription start site region 150254
Tssr150255 18 23472279 to 23472280 1 + TSS region transcription start site region 150255
Tssr150256 18 23497498 to 23497544 46 + TSS region transcription start site region 150256
Tssr150257 18 23497548 to 23497608 60 + TSS region transcription start site region 150257
D18Mit172 18 23594669 to 23594774 105 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 172
Gm47898 18 23645326 to 23651837 6511 - antisense lncRNA gene predicted gene, 47898
Tssr5257 18 23715247 to 23715272 25 + TSS region transcription start site region 5257
Gm15972 18 23750447 to 23752305 1858 - antisense lncRNA gene predicted gene 15972
Cpgi9757 18 23752161 to 23753020 859 CpG island CpG island 9757
Mapre2 18 23752333 to 23893861 141528 + protein coding gene microtubule-associated protein, RP/EB family, member 2
Tssr150258 18 23752361 to 23752401 40 + TSS region transcription start site region 150258
Cpgi9758 18 23753256 to 23753453 197 CpG island CpG island 9758
Cpgi9759 18 23753543 to 23753996 453 CpG island CpG island 9759
Tssr150259 18 23753672 to 23753688 16 + TSS region transcription start site region 150259
Tssr150260 18 23753708 to 23753719 11 + TSS region transcription start site region 150260
Tssr150261 18 23753735 to 23753759 24 + TSS region transcription start site region 150261
Tssr150262 18 23771713 to 23771738 25 + TSS region transcription start site region 150262
Mir6360 18 23774864 to 23774989 125 - miRNA gene microRNA 6360
Tssr150263 18 23796839 to 23796840 1 + TSS region transcription start site region 150263
Cpgi9760 18 23803602 to 23804544 942 CpG island CpG island 9760
Tssr150264 18 23803962 to 23804054 92 + TSS region transcription start site region 150264
Tssr5258 18 23805747 to 23805767 20 - TSS region transcription start site region 5258
Tssr152638 18 23805771 to 23805779 8 - TSS region transcription start site region 152638
Gm23207 18 23817270 to 23817371 101 - snRNA gene predicted gene, 23207
Tssr150265 18 23858067 to 23858091 24 + TSS region transcription start site region 150265
Tssr152639 18 23867569 to 23867571 2 - TSS region transcription start site region 152639
Tssr150266 18 23880453 to 23880454 1 + TSS region transcription start site region 150266
Tssr150267 18 23883532 to 23883553 21 + TSS region transcription start site region 150267
Tssr150268 18 23883575 to 23883591 16 + TSS region transcription start site region 150268
Tssr5259 18 23891176 to 23891214 38 + TSS region transcription start site region 5259
Tssr150269 18 23891467 to 23891479 12 + TSS region transcription start site region 150269
Tssr150270 18 23913365 to 23913371 6 + TSS region transcription start site region 150270
Gm38559 18 23916865 to 23928728 11863 + lncRNA gene predicted gene, 38559
Tssr5260 18 23917054 to 23917084 30 + TSS region transcription start site region 5260
Tssr150271 18 23943850 to 23943853 3 + TSS region transcription start site region 150271
Gm46611 18 23943897 to 23944122 225 + pseudogene predicted gene, 46611
Tssr150272 18 23944922 to 23944954 32 + TSS region transcription start site region 150272
Rpl19-ps7 18 23944959 to 23945550 591 + pseudogene ribosomal protein L19, pseudogene 7
Tssr152640 18 23952253 to 23952268 15 - TSS region transcription start site region 152640
Cpgi9761 18 23954285 to 23955313 1028 CpG island CpG island 9761
Tssr152641 18 23954570 to 23954607 37 - TSS region transcription start site region 152641
Tssr150273 18 23954668 to 23954704 36 + TSS region transcription start site region 150273
Zfp397 18 23954692 to 23964673 9981 + protein coding gene zinc finger protein 397
Tssr150274 18 23954706 to 23954717 11 + TSS region transcription start site region 150274
Tssr150275 18 23954848 to 23954873 25 + TSS region transcription start site region 150275
Tssr150276 18 23954876 to 23954922 46 + TSS region transcription start site region 150276
Zscan30 18 23966680 to 23987226 20546 - protein coding gene zinc finger and SCAN domain containing 30
Cpgi9762 18 23986940 to 23987334 394 CpG island CpG island 9762
Tssr152642 18 23987235 to 23987282 47 - TSS region transcription start site region 152642
Cpgi9763 18 23989551 to 23989706 155 CpG island CpG island 9763
Zfp35 18 23989634 to 24005371 15737 + protein coding gene zinc finger protein 35
Tssr150277 18 23989652 to 23989694 42 + TSS region transcription start site region 150277
Tssr150278 18 23999345 to 23999352 7 + TSS region transcription start site region 150278
Zfp24 18 24009702 to 24020810 11108 - protein coding gene zinc finger protein 24
Cpgi9764 18 24020187 to 24021247 1060 CpG island CpG island 9764
Tssr152643 18 24020307 to 24020364 57 - TSS region transcription start site region 152643
Tssr152644 18 24020749 to 24020813 64 - TSS region transcription start site region 152644
Cpgi9765 18 24042932 to 24043124 192 CpG island CpG island 9765
Gm18084 18 24044333 to 24044958 625 - pseudogene predicted gene, 18084
Gm18085 18 24081092 to 24081925 833 - pseudogene predicted gene, 18085
Tssr150279 18 24088988 to 24088992 4 + TSS region transcription start site region 150279
Gm41677 18 24100531 to 24104675 4144 - lncRNA gene predicted gene, 41677
Ino80c 18 24104761 to 24121819 17058 - protein coding gene INO80 complex subunit C
Tssr152645 18 24112042 to 24112076 34 - TSS region transcription start site region 152645
Tssr152646 18 24112077 to 24112087 10 - TSS region transcription start site region 152646
Tssr152647 18 24112089 to 24112108 19 - TSS region transcription start site region 152647
Cpgi9766 18 24121559 to 24122070 511 CpG island CpG island 9766
Tssr150280 18 24121614 to 24121645 31 + TSS region transcription start site region 150280
Tssr152648 18 24121810 to 24121881 71 - TSS region transcription start site region 152648
Tssr150281 18 24154560 to 24154567 7 + TSS region transcription start site region 150281
Tssr150282 18 24168636 to 24168643 7 + TSS region transcription start site region 150282
Tssr152649 18 24178835 to 24178875 40 - TSS region transcription start site region 152649
Tssr152650 18 24178890 to 24178907 17 - TSS region transcription start site region 152650
Cpgi9767 18 24205020 to 24206755 1735 CpG island CpG island 9767
Tssr150283 18 24205303 to 24205348 45 + TSS region transcription start site region 150283
Galnt1 18 24205344 to 24286816 81472 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 1
Tssr150284 18 24205362 to 24205379 17 + TSS region transcription start site region 150284
Tssr150285 18 24205607 to 24205632 25 + TSS region transcription start site region 150285
Tssr150286 18 24205695 to 24205704 9 + TSS region transcription start site region 150286
Tssr150287 18 24205709 to 24205720 11 + TSS region transcription start site region 150287
Tssr150288 18 24205722 to 24205762 40 + TSS region transcription start site region 150288
Tssr152651 18 24205851 to 24205860 9 - TSS region transcription start site region 152651
Tssr150289 18 24205937 to 24206002 65 + TSS region transcription start site region 150289
Tssr150290 18 24206015 to 24206038 23 + TSS region transcription start site region 150290
Tssr150291 18 24238239 to 24238267 28 + TSS region transcription start site region 150291
Tssr5261 18 24257354 to 24257380 26 + TSS region transcription start site region 5261
Gm7701 18 24257378 to 24258856 1478 + pseudogene predicted gene 7701
Gm38565 18 24289768 to 24315956 26188 + lncRNA gene predicted gene, 38565
Gm38410 18 24339366 to 24344630 5264 + unclassified gene predicted gene, 38410
Cpgi9768 18 24363641 to 24363807 166 CpG island CpG island 9768
D18Mit231 18 24371582 to 24371700 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 231
Tssr150292 18 24397421 to 24397424 3 + TSS region transcription start site region 150292
Gm32547 18 24426143 to 24467576 41433 - lncRNA gene predicted gene, 32547
Mir187 18 24429110 to 24429170 60 - miRNA gene microRNA 187
Tssr152652 18 24433507 to 24433510 3 - TSS region transcription start site region 152652
Tssr152653 18 24439101 to 24439106 5 - TSS region transcription start site region 152653