Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:20946450-22356466

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf125 18 20944625 to 20983862 39237 + protein coding gene ring finger protein 125
Cpgi9747 18 20961113 to 20962073 960 CpG island CpG island 9747
Tssr150199 18 20961242 to 20961249 7 + TSS region transcription start site region 150199
Tssr150200 18 20961256 to 20961267 11 + TSS region transcription start site region 150200
Tssr150201 18 20961276 to 20961290 14 + TSS region transcription start site region 150201
Tssr150202 18 20961302 to 20961350 48 + TSS region transcription start site region 150202
Tssr150203 18 20961356 to 20961381 25 + TSS region transcription start site region 150203
Tssr150204 18 20961423 to 20961467 44 + TSS region transcription start site region 150204
Tssr150205 18 20961480 to 20961511 31 + TSS region transcription start site region 150205
Tssr150206 18 20961567 to 20961589 22 + TSS region transcription start site region 150206
Tssr150207 18 20961594 to 20961637 43 + TSS region transcription start site region 150207
Tssr150208 18 20961745 to 20961754 9 + TSS region transcription start site region 150208
Tssr150209 18 20962449 to 20962465 16 + TSS region transcription start site region 150209
Tssr150210 18 20962681 to 20962686 5 + TSS region transcription start site region 150210
Tssr150211 18 20962806 to 20962818 12 + TSS region transcription start site region 150211
Tssr150212 18 20962869 to 20962876 7 + TSS region transcription start site region 150212
Tssr150213 18 20962888 to 20962901 13 + TSS region transcription start site region 150213
Tssr150214 18 20963124 to 20963128 4 + TSS region transcription start site region 150214
D18Ertd232e 18 20967529 to 20967730 201 DNA segment DNA segment, Chr 18, ERATO Doi 232, expressed
Tssr150215 18 20971652 to 20971662 10 + TSS region transcription start site region 150215
C730049O14Rik 18 20985620 to 20987350 1730 unclassified non-coding RNA gene RIKEN cDNA C730049O14 gene
Cpgi9748 18 21001177 to 21002652 1475 CpG island CpG island 9748
Tssr150216 18 21001246 to 21001266 20 + TSS region transcription start site region 150216
Tssr150217 18 21001267 to 21001273 6 + TSS region transcription start site region 150217
Tssr150218 18 21001276 to 21001287 11 + TSS region transcription start site region 150218
Tssr150219 18 21001292 to 21001335 43 + TSS region transcription start site region 150219
Rnf138 18 21001341 to 21028224 26883 + protein coding gene ring finger protein 138
Tssr150220 18 21001353 to 21001358 5 + TSS region transcription start site region 150220
Tssr150221 18 21001472 to 21001491 19 + TSS region transcription start site region 150221
Tssr152612 18 21001528 to 21001546 18 - TSS region transcription start site region 152612
Tssr150222 18 21001766 to 21001777 11 + TSS region transcription start site region 150222
Tssr150223 18 21001778 to 21001789 11 + TSS region transcription start site region 150223
Tssr150224 18 21001794 to 21001810 16 + TSS region transcription start site region 150224
Tssr150225 18 21001819 to 21001829 10 + TSS region transcription start site region 150225
Tssr150226 18 21001877 to 21002012 135 + TSS region transcription start site region 150226
Tssr150227 18 21002026 to 21002035 9 + TSS region transcription start site region 150227
Tssr5256 18 21026304 to 21026308 4 + TSS region transcription start site region 5256
D18Mit173 18 21072016 to 21072134 118 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 173
Tssr150228 18 21072329 to 21072351 22 + TSS region transcription start site region 150228
Mep1b 18 21072344 to 21100199 27855 + protein coding gene meprin 1 beta
Gm6378 18 21076668 to 21077109 441 - pseudogene predicted pseudogene 6378
Tssr150229 18 21091163 to 21091189 26 + TSS region transcription start site region 150229
Tssr150230 18 21093292 to 21093326 34 + TSS region transcription start site region 150230
Tssr152613 18 21116867 to 21116870 3 - TSS region transcription start site region 152613
Garem1 18 21127342 to 21300139 172797 - protein coding gene GRB2 associated regulator of MAPK1 subtype 1
Tssr152614 18 21148919 to 21148921 2 - TSS region transcription start site region 152614
D18Mit132.2 18 21248143 to 21248274 131 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 132.2
D18Mit132 18 21248250 to 21248358 108 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 132
Cpgi9749 18 21299368 to 21300837 1469 CpG island CpG island 9749
Tssr152615 18 21299946 to 21299958 12 - TSS region transcription start site region 152615
Tssr152616 18 21300080 to 21300091 11 - TSS region transcription start site region 152616
Tssr152617 18 21300116 to 21300123 7 - TSS region transcription start site region 152617
Tssr152618 18 21300129 to 21300168 39 - TSS region transcription start site region 152618
Gm24372 18 21302198 to 21302307 109 + unclassified non-coding RNA gene predicted gene, 24372
Gm50049 18 21304714 to 21318146 13432 - lincRNA gene predicted gene, 50049
Cpgi9750 18 21317721 to 21317893 172 CpG island CpG island 9750
Gm7758 18 21317769 to 21318253 484 + pseudogene predicted gene 7758
Gm41675 18 21318771 to 21328075 9304 + lncRNA gene predicted gene, 41675
Gm50052 18 21332106 to 21332679 573 - pseudogene predicted gene, 50052
Gm22886 18 21380825 to 21380931 106 - snRNA gene predicted gene, 22886
Tssr152619 18 21421989 to 21421993 4 - TSS region transcription start site region 152619
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
D18Mit68 18 21435625 to 21435737 112 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 68
Gm31646 18 21480493 to 21649604 169111 + lncRNA gene predicted gene, 31646
Gm4837 18 21492516 to 21494099 1583 - pseudogene predicted gene 4837
D18Mit111 18 21513305 to 21513420 115 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 111
baw 18 21513305 to 46408598 24895293 heritable phenotypic marker black and white
Idd21.3 18 21513420 to 6108404 -15405016 QTL insulin dependent diabetes susceptibility 21.3
Klhl14 18 21550377 to 21654718 104341 - protein coding gene kelch-like 14
D18Mit82 18 21570676 to 21570810 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 82
Tssr150231 18 21651389 to 21651406 17 + TSS region transcription start site region 150231
Cpgi9751 18 21651413 to 21653258 1845 CpG island CpG island 9751
Tssr150232 18 21651431 to 21651443 12 + TSS region transcription start site region 150232
Tssr150233 18 21651450 to 21651466 16 + TSS region transcription start site region 150233
4930426D05Rik 18 21651565 to 21656107 4542 + antisense lncRNA gene RIKEN cDNA 4930426D05 gene
Tssr152620 18 21651813 to 21651843 30 - TSS region transcription start site region 152620
Tssr152621 18 21651999 to 21652015 16 - TSS region transcription start site region 152621
Tssr152622 18 21652077 to 21652089 12 - TSS region transcription start site region 152622
Tssr152623 18 21652091 to 21652120 29 - TSS region transcription start site region 152623
Tssr152624 18 21652196 to 21652207 11 - TSS region transcription start site region 152624
Tssr150234 18 21652274 to 21652323 49 + TSS region transcription start site region 150234
Tssr152625 18 21652362 to 21652373 11 - TSS region transcription start site region 152625
Tssr150235 18 21653321 to 21653331 10 + TSS region transcription start site region 150235
Cpgi9752 18 21653587 to 21654087 500 CpG island CpG island 9752
Ccdc178 18 21810897 to 22171396 360499 - protein coding gene coiled coil domain containing 178
Tssr152626 18 22171392 to 22171423 31 - TSS region transcription start site region 152626
Tssr150236 18 22171431 to 22171435 4 + TSS region transcription start site region 150236
Tssr150237 18 22171441 to 22171456 15 + TSS region transcription start site region 150237
4921517O11Rik 18 22171489 to 22173314 1825 unclassified gene RIKEN cDNA 4921517O11 gene
D18Mit27 18 22314612 to 22314751 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 27
Tssr150238 18 22318991 to 22318999 8 + TSS region transcription start site region 150238
Gm5968 18 22319065 to 22319928 863 + pseudogene predicted gene 5968
Gm41676 18 22334840 to 22344110 9270 - lncRNA gene predicted gene, 41676
Cpgi9753 18 22343456 to 22345244 1788 CpG island CpG island 9753
Asxl3 18 22344883 to 22530227 185344 + protein coding gene additional sex combs like 3, transcriptional regulator
Tssr150239 18 22344913 to 22344925 12 + TSS region transcription start site region 150239