Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:20456652-21486662

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dsg4 18 20436175 to 20471821 35646 + protein coding gene desmoglein 4
Tssr150160 18 20473244 to 20473245 1 + TSS region transcription start site region 150160
Tssr150161 18 20499209 to 20499216 7 + TSS region transcription start site region 150161
Gm5688 18 20499315 to 20500587 1272 + pseudogene predicted gene 5688
Tssr150162 18 20510223 to 20510234 11 + TSS region transcription start site region 150162
Tssr150163 18 20510253 to 20510267 14 + TSS region transcription start site region 150163
Tssr150164 18 20510269 to 20510290 21 + TSS region transcription start site region 150164
Dsg3 18 20510274 to 20541310 31036 + protein coding gene desmoglein 3
Tssr150165 18 20510291 to 20510301 10 + TSS region transcription start site region 150165
Tpi-rs10 18 20548587 to 20549364 777 - pseudogene triosephosphate isomerase related sequence 10
Tssr152588 18 20549354 to 20549369 15 - TSS region transcription start site region 152588
Tssr150166 18 20556417 to 20556419 2 + TSS region transcription start site region 150166
Gm46630 18 20557533 to 20557978 445 - lncRNA gene predicted gene, 46630
Cpgi9741 18 20557756 to 20558631 875 CpG island CpG island 9741
Tssr150167 18 20558016 to 20558025 9 + TSS region transcription start site region 150167
Tssr150168 18 20558038 to 20558086 48 + TSS region transcription start site region 150168
Dsg2 18 20558074 to 20604521 46447 + protein coding gene desmoglein 2
Tssr150169 18 20558092 to 20558201 109 + TSS region transcription start site region 150169
Tssr150170 18 20558221 to 20558232 11 + TSS region transcription start site region 150170
Tssr150171 18 20558277 to 20558280 3 + TSS region transcription start site region 150171
Cpgi9742 18 20594058 to 20594209 151 CpG island CpG island 9742
Gm16090 18 20597964 to 20665260 67296 - antisense lncRNA gene predicted gene 16090
Cpgi9743 18 20598297 to 20598628 331 CpG island CpG island 9743
Cpgi9744 18 20601373 to 20601686 313 CpG island CpG island 9744
Tssr150172 18 20603351 to 20603364 13 + TSS region transcription start site region 150172
Ttr 18 20665280 to 20674321 9041 + protein coding gene transthyretin
Tssr150173 18 20665403 to 20665420 17 + TSS region transcription start site region 150173
Tssr150174 18 20666443 to 20666474 31 + TSS region transcription start site region 150174
Tssr150175 18 20666480 to 20666517 37 + TSS region transcription start site region 150175
Tssr150176 18 20666540 to 20666551 11 + TSS region transcription start site region 150176
Tssr150177 18 20666552 to 20666567 15 + TSS region transcription start site region 150177
Tssr150178 18 20666703 to 20666714 11 + TSS region transcription start site region 150178
Tssr150179 18 20667401 to 20667406 5 + TSS region transcription start site region 150179
Tssr150180 18 20667616 to 20667627 11 + TSS region transcription start site region 150180
Tssr150181 18 20667710 to 20667721 11 + TSS region transcription start site region 150181
Tssr150182 18 20668926 to 20668928 2 + TSS region transcription start site region 150182
Tssr5254 18 20669971 to 20669972 1 + TSS region transcription start site region 5254
Tssr150183 18 20669975 to 20670045 70 + TSS region transcription start site region 150183
Tssr152589 18 20670044 to 20670074 30 - TSS region transcription start site region 152589
Tssr150184 18 20670048 to 20670067 19 + TSS region transcription start site region 150184
Tssr150185 18 20670070 to 20670098 28 + TSS region transcription start site region 150185
Tssr150186 18 20671548 to 20671564 16 + TSS region transcription start site region 150186
Tssr150187 18 20673626 to 20673697 71 + TSS region transcription start site region 150187
Tssr152590 18 20673684 to 20673693 9 - TSS region transcription start site region 152590
Tssr152591 18 20673695 to 20673770 75 - TSS region transcription start site region 152591
Tssr150188 18 20673698 to 20673721 23 + TSS region transcription start site region 150188
Tssr150189 18 20673752 to 20673801 49 + TSS region transcription start site region 150189
Tssr150190 18 20673804 to 20673821 17 + TSS region transcription start site region 150190
Tssr150191 18 20673831 to 20673867 36 + TSS region transcription start site region 150191
Gm10269 18 20682594 to 20682963 369 - pseudogene predicted gene 10269
Tssr152592 18 20683001 to 20683006 5 - TSS region transcription start site region 152592
B4galt6 18 20684599 to 20746404 61805 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
Tssr152593 18 20694736 to 20694749 13 - TSS region transcription start site region 152593
Tssr152594 18 20703278 to 20703286 8 - TSS region transcription start site region 152594
Gm31437 18 20720150 to 20726003 5853 + lncRNA gene predicted gene, 31437
Tssr152595 18 20738637 to 20738641 4 - TSS region transcription start site region 152595
Tssr152596 18 20741028 to 20741042 14 - TSS region transcription start site region 152596
Tssr150192 18 20741156 to 20741181 25 + TSS region transcription start site region 150192
Cpgi9745 18 20745343 to 20746688 1345 CpG island CpG island 9745
Tssr5255 18 20745399 to 20745405 6 + TSS region transcription start site region 5255
Tssr152597 18 20745578 to 20745623 45 - TSS region transcription start site region 152597
Tssr152598 18 20745718 to 20745739 21 - TSS region transcription start site region 152598
Tssr152599 18 20745879 to 20745914 35 - TSS region transcription start site region 152599
Tssr152600 18 20745919 to 20745923 4 - TSS region transcription start site region 152600
Tssr152601 18 20746126 to 20746135 9 - TSS region transcription start site region 152601
Tssr152602 18 20746227 to 20746239 12 - TSS region transcription start site region 152602
Tssr152603 18 20746267 to 20746333 66 - TSS region transcription start site region 152603
Tssr152604 18 20746334 to 20746394 60 - TSS region transcription start site region 152604
Tssr152605 18 20746402 to 20746422 20 - TSS region transcription start site region 152605
Tssr150193 18 20749992 to 20749997 5 + TSS region transcription start site region 150193
Tssr150194 18 20762670 to 20762680 10 + TSS region transcription start site region 150194
Tssr150195 18 20762681 to 20762694 13 + TSS region transcription start site region 150195
Tssr152606 18 20771597 to 20771611 14 - TSS region transcription start site region 152606
Tssr150196 18 20774338 to 20774348 10 + TSS region transcription start site region 150196
Tssr150197 18 20782587 to 20782617 30 + TSS region transcription start site region 150197
D18Ertd201e 18 20788999 to 20789200 201 DNA segment DNA segment, Chr 18, ERATO Doi 201, expressed
Trappc8 18 20817223 to 20896093 78870 - protein coding gene trafficking protein particle complex 8
D18Mit83 18 20820637 to 20820745 108 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 83
Sluc41 18 20820637 to 57457636 36636999 QTL susceptibility to lung cancer 41
Tssr152607 18 20831631 to 20831657 26 - TSS region transcription start site region 152607
Gm24959 18 20844447 to 20844592 145 - snRNA gene predicted gene, 24959
Gm10551 18 20876124 to 20880776 4652 unclassified gene predicted gene 10551
Cpgi9746 18 20895567 to 20896893 1326 CpG island CpG island 9746
Tssr152608 18 20896342 to 20896400 58 - TSS region transcription start site region 152608
Tssr152609 18 20896410 to 20896421 11 - TSS region transcription start site region 152609
Tssr152610 18 20943762 to 20943807 45 - TSS region transcription start site region 152610
Tssr150198 18 20944607 to 20944625 18 + TSS region transcription start site region 150198
Rnf125 18 20944625 to 20983862 39237 + protein coding gene ring finger protein 125
Tssr152611 18 20945767 to 20945775 8 - TSS region transcription start site region 152611
Cpgi9747 18 20961113 to 20962073 960 CpG island CpG island 9747
Tssr150199 18 20961242 to 20961249 7 + TSS region transcription start site region 150199
Tssr150200 18 20961256 to 20961267 11 + TSS region transcription start site region 150200
Tssr150201 18 20961276 to 20961290 14 + TSS region transcription start site region 150201
Tssr150202 18 20961302 to 20961350 48 + TSS region transcription start site region 150202
Tssr150203 18 20961356 to 20961381 25 + TSS region transcription start site region 150203
Tssr150204 18 20961423 to 20961467 44 + TSS region transcription start site region 150204
Tssr150205 18 20961480 to 20961511 31 + TSS region transcription start site region 150205
Tssr150206 18 20961567 to 20961589 22 + TSS region transcription start site region 150206
Tssr150207 18 20961594 to 20961637 43 + TSS region transcription start site region 150207
Tssr150208 18 20961745 to 20961754 9 + TSS region transcription start site region 150208
Tssr150209 18 20962449 to 20962465 16 + TSS region transcription start site region 150209
Tssr150210 18 20962681 to 20962686 5 + TSS region transcription start site region 150210
Tssr150211 18 20962806 to 20962818 12 + TSS region transcription start site region 150211
Tssr150212 18 20962869 to 20962876 7 + TSS region transcription start site region 150212
Tssr150213 18 20962888 to 20962901 13 + TSS region transcription start site region 150213
Tssr150214 18 20963124 to 20963128 4 + TSS region transcription start site region 150214
D18Ertd232e 18 20967529 to 20967730 201 DNA segment DNA segment, Chr 18, ERATO Doi 232, expressed
Tssr150215 18 20971652 to 20971662 10 + TSS region transcription start site region 150215
C730049O14Rik 18 20985620 to 20987350 1730 unclassified non-coding RNA gene RIKEN cDNA C730049O14 gene
Cpgi9748 18 21001177 to 21002652 1475 CpG island CpG island 9748
Tssr150216 18 21001246 to 21001266 20 + TSS region transcription start site region 150216
Tssr150217 18 21001267 to 21001273 6 + TSS region transcription start site region 150217
Tssr150218 18 21001276 to 21001287 11 + TSS region transcription start site region 150218
Tssr150219 18 21001292 to 21001335 43 + TSS region transcription start site region 150219
Rnf138 18 21001341 to 21028224 26883 + protein coding gene ring finger protein 138
Tssr150220 18 21001353 to 21001358 5 + TSS region transcription start site region 150220
Tssr150221 18 21001472 to 21001491 19 + TSS region transcription start site region 150221
Tssr152612 18 21001528 to 21001546 18 - TSS region transcription start site region 152612
Tssr150222 18 21001766 to 21001777 11 + TSS region transcription start site region 150222
Tssr150223 18 21001778 to 21001789 11 + TSS region transcription start site region 150223
Tssr150224 18 21001794 to 21001810 16 + TSS region transcription start site region 150224
Tssr150225 18 21001819 to 21001829 10 + TSS region transcription start site region 150225
Tssr150226 18 21001877 to 21002012 135 + TSS region transcription start site region 150226
Tssr150227 18 21002026 to 21002035 9 + TSS region transcription start site region 150227
Tssr5256 18 21026304 to 21026308 4 + TSS region transcription start site region 5256
D18Mit173 18 21072016 to 21072134 118 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 173
Tssr150228 18 21072329 to 21072351 22 + TSS region transcription start site region 150228
Mep1b 18 21072344 to 21100199 27855 + protein coding gene meprin 1 beta
Gm6378 18 21076668 to 21077109 441 - pseudogene predicted pseudogene 6378
Tssr150229 18 21091163 to 21091189 26 + TSS region transcription start site region 150229
Tssr150230 18 21093292 to 21093326 34 + TSS region transcription start site region 150230
Tssr152613 18 21116867 to 21116870 3 - TSS region transcription start site region 152613
Garem1 18 21127342 to 21300139 172797 - protein coding gene GRB2 associated regulator of MAPK1 subtype 1
Tssr152614 18 21148919 to 21148921 2 - TSS region transcription start site region 152614
D18Mit132.2 18 21248143 to 21248274 131 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 132.2
D18Mit132 18 21248250 to 21248358 108 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 132
Cpgi9749 18 21299368 to 21300837 1469 CpG island CpG island 9749
Tssr152615 18 21299946 to 21299958 12 - TSS region transcription start site region 152615
Tssr152616 18 21300080 to 21300091 11 - TSS region transcription start site region 152616
Tssr152617 18 21300116 to 21300123 7 - TSS region transcription start site region 152617
Tssr152618 18 21300129 to 21300168 39 - TSS region transcription start site region 152618
Gm24372 18 21302198 to 21302307 109 + unclassified non-coding RNA gene predicted gene, 24372
Gm50049 18 21304714 to 21318146 13432 - lincRNA gene predicted gene, 50049
Cpgi9750 18 21317721 to 21317893 172 CpG island CpG island 9750
Gm7758 18 21317769 to 21318253 484 + pseudogene predicted gene 7758
Gm41675 18 21318771 to 21328075 9304 + lncRNA gene predicted gene, 41675
Gm50052 18 21332106 to 21332679 573 - pseudogene predicted gene, 50052
Gm22886 18 21380825 to 21380931 106 - snRNA gene predicted gene, 22886
Tssr152619 18 21421989 to 21421993 4 - TSS region transcription start site region 152619
Otx2m1 18 21435625 to 36054687 14619062 QTL orthodenticle homolog 2 modifier 1
D18Mit68 18 21435625 to 21435737 112 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 68
Gm31646 18 21480493 to 21649604 169111 + lncRNA gene predicted gene, 31646