Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:16438277-19008511

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdh2 18 16588877 to 16809246 220369 - protein coding gene cadherin 2
3100003M19Rik 18 16597563 to 16599553 1990 unclassified non-coding RNA gene RIKEN cDNA 3100003M19 gene
Tssr152542 18 16640585 to 16640595 10 - TSS region transcription start site region 152542
Tssr152543 18 16690535 to 16690548 13 - TSS region transcription start site region 152543
9430011C21Rik 18 16692355 to 16694548 2193 unclassified gene RIKEN cDNA 9430011C21 gene
Gm15485 18 16728733 to 16729678 945 + antisense lncRNA gene predicted gene 15485
Tssr152544 18 16745266 to 16745275 9 - TSS region transcription start site region 152544
Tssr152545 18 16745342 to 16745359 17 - TSS region transcription start site region 152545
Tssr5251 18 16746243 to 16746264 21 - TSS region transcription start site region 5251
Tssr152546 18 16764805 to 16764809 4 - TSS region transcription start site region 152546
Tssr152547 18 16766282 to 16766285 3 - TSS region transcription start site region 152547
Tssr152548 18 16767961 to 16768010 49 - TSS region transcription start site region 152548
Tssr152549 18 16768822 to 16768824 2 - TSS region transcription start site region 152549
Mdq3 18 16786338 to 16786338 0 QTL mammary ductal QTL 3
D18Mit191 18 16794692 to 16794808 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 191
Cpgi9737 18 16806783 to 16809860 3077 CpG island CpG island 9737
Tssr152550 18 16808453 to 16808516 63 - TSS region transcription start site region 152550
Tssr152551 18 16808550 to 16808561 11 - TSS region transcription start site region 152551
Tssr152552 18 16808577 to 16808608 31 - TSS region transcription start site region 152552
Tssr152553 18 16808616 to 16808677 61 - TSS region transcription start site region 152553
Tssr152554 18 16808764 to 16808850 86 - TSS region transcription start site region 152554
Tssr152555 18 16809065 to 16809087 22 - TSS region transcription start site region 152555
Tssr152556 18 16809096 to 16809118 22 - TSS region transcription start site region 152556
Tssr152557 18 16809233 to 16809324 91 - TSS region transcription start site region 152557
Gm15328 18 16816407 to 16822783 6376 + lincRNA gene predicted gene 15328
Gm7670 18 16839317 to 16839957 640 - pseudogene predicted gene 7670
Gm18399 18 16951048 to 16951867 819 - pseudogene predicted gene, 18399
Tssr152558 18 17018975 to 17018985 10 - TSS region transcription start site region 152558
Tssr150151 18 17019062 to 17019093 31 + TSS region transcription start site region 150151
D18Mit171 18 17027136 to 17027245 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 171
Gm22470 18 17034662 to 17034791 129 + snoRNA gene predicted gene, 22470
1700001G01Rik 18 17035508 to 17137559 102051 + lincRNA gene RIKEN cDNA 1700001G01 gene
Gm41674 18 17050571 to 17058297 7726 + lncRNA gene predicted gene, 41674
Gm24015 18 17126571 to 17126802 231 - unclassified non-coding RNA gene predicted gene, 24015
4921533I20Rik 18 17234483 to 17235482 999 - pseudogene Riken cDNA 4921533I20 gene
Gm30960 18 17254639 to 17257022 2383 - lncRNA gene predicted gene, 30960
Gm18928 18 17290647 to 17291865 1218 - pseudogene predicted gene, 18928
Gm31018 18 17478967 to 17533929 54962 - lncRNA gene predicted gene, 31018
4930545E07Rik 18 17568746 to 17580990 12244 - lncRNA gene RIKEN cDNA 4930545E07 gene
Gm50082 18 17675864 to 17676119 255 - pseudogene predicted gene, 50082
D18Mit230 18 17692456 to 17692563 107 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 230
D18Mit239 18 17723277 to 17723511 234 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 239
D18Mit157 18 17761117 to 17761251 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 157
D18Mit157.2 18 17761285 to 17761445 160 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 157.2
Tssr150152 18 17773372 to 17773374 2 + TSS region transcription start site region 150152
Tssr152559 18 17784370 to 17784371 1 - TSS region transcription start site region 152559
Gm50083 18 17828819 to 17829020 201 + pseudogene predicted gene, 50083
Tssr152560 18 17829336 to 17829338 2 - TSS region transcription start site region 152560
Cpgi9738 18 17997707 to 17997919 212 CpG island CpG island 9738
Gm26235 18 18099560 to 18099660 100 + miRNA gene predicted gene, 26235
Gm50084 18 18124541 to 18244157 119616 - lincRNA gene predicted gene, 50084
Ogrq6 18 18132472 to 30437766 12305294 QTL overall growth rate QTL 6
Pwbwq17 18 18132472 to 30437766 12305294 QTL post-weaning body weight QTL 17
Pwbwq18 18 18132472 to 30437766 12305294 QTL post-weaning body weight QTL 18
Tssr5252 18 18232271 to 18232277 6 + TSS region transcription start site region 5252
Gm2889 18 18829229 to 18832118 2889 unclassified gene predicted gene 2889