Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:15203746-16864046

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm50035 18 15201112 to 15207791 6679 - lincRNA gene predicted gene, 50035
Tssr152523 18 15207790 to 15207797 7 - TSS region transcription start site region 152523
Gm2629 18 15213100 to 15214264 1164 + pseudogene predicted gene 2629
Gm41672 18 15233049 to 15252008 18959 - lncRNA gene predicted gene, 41672
E430002N23Rik 18 15308858 to 15312699 3841 - unclassified non-coding RNA gene RIKEN cDNA E430002N23 gene
Tssr152524 18 15312693 to 15312733 40 - TSS region transcription start site region 152524
Tssr152525 18 15312738 to 15312752 14 - TSS region transcription start site region 152525
Tssr150146 18 15313458 to 15313465 7 + TSS region transcription start site region 150146
Gm30230 18 15321025 to 15346206 25181 - lncRNA gene predicted gene, 30230
Tssr150147 18 15324949 to 15324957 8 + TSS region transcription start site region 150147
Tssr152526 18 15331797 to 15331825 28 - TSS region transcription start site region 152526
Tssr152527 18 15331857 to 15331871 14 - TSS region transcription start site region 152527
Tssr152528 18 15346195 to 15346200 5 - TSS region transcription start site region 152528
Tssr150148 18 15346346 to 15346365 19 + TSS region transcription start site region 150148
A830021F12Rik 18 15351934 to 15362306 10372 + protein coding gene RIKEN cDNA A830021F12 gene
Aqp4 18 15389496 to 15410982 21486 - protein coding gene aquaporin 4
Tssr152529 18 15402695 to 15402724 29 - TSS region transcription start site region 152529
Tssr152530 18 15402726 to 15402786 60 - TSS region transcription start site region 152530
Gm50048 18 15403087 to 15430790 27703 + antisense lncRNA gene predicted gene, 50048
Tssr152531 18 15403504 to 15403531 27 - TSS region transcription start site region 152531
Tssr152532 18 15403616 to 15403635 19 - TSS region transcription start site region 152532
Tssr152533 18 15403640 to 15403657 17 - TSS region transcription start site region 152533
Tssr152534 18 15403658 to 15403667 9 - TSS region transcription start site region 152534
Tssr152535 18 15403680 to 15403687 7 - TSS region transcription start site region 152535
Tssr152536 18 15403690 to 15403701 11 - TSS region transcription start site region 152536
Gm7650 18 15414474 to 15415367 893 + pseudogene predicted gene 7650
Chst9 18 15451773 to 15718046 266273 - protein coding gene carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
D18Mit170 18 15465747 to 15465844 97 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 170
D18Mit197 18 15492568 to 15492690 122 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 197
D18Mit21 18 15533264 to 15533394 130 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 21
Gm30452 18 15605608 to 15620105 14497 + lncRNA gene predicted gene, 30452
Cpgi9736 18 15759464 to 15760378 914 CpG island CpG island 9736
Tssr152537 18 15760109 to 15760122 13 - TSS region transcription start site region 152537
Tssr152538 18 15760149 to 15760162 13 - TSS region transcription start site region 152538
Tssr152539 18 15822584 to 15822586 2 - TSS region transcription start site region 152539
Tssr150149 18 15832772 to 15832774 2 + TSS region transcription start site region 150149
Gm10036 18 15832794 to 15833327 533 + pseudogene predicted gene 10036
Gm24228 18 15874661 to 15874789 128 + snoRNA gene predicted gene, 24228
D18Mit116 18 15881143 to 15881281 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 116
Gm4835 18 15988368 to 15989339 971 + pseudogene predicted pseudogene 4835
Gm30512 18 16021076 to 16032288 11212 + lncRNA gene predicted gene, 30512
Gm22389 18 16033746 to 16034046 300 + unclassified non-coding RNA gene predicted gene, 22389
Gm41673 18 16037135 to 16039879 2744 - lncRNA gene predicted gene, 41673
Gm30620 18 16043618 to 16115424 71806 - lncRNA gene predicted gene, 30620
Tssr152540 18 16115368 to 16115383 15 - TSS region transcription start site region 152540
Gm50076 18 16136887 to 16144450 7563 - lincRNA gene predicted gene, 50076
Gm6078 18 16194035 to 16194648 613 - pseudogene predicted gene 6078
Gm24385 18 16221019 to 16221368 349 - unclassified non-coding RNA gene predicted gene, 24385
Tssr150150 18 16274571 to 16274588 17 + TSS region transcription start site region 150150
Gm7665 18 16274648 to 16274944 296 - pseudogene predicted pseudogene 7665
Tssr152541 18 16274981 to 16275013 32 - TSS region transcription start site region 152541
Gm30765 18 16293824 to 16318593 24769 + lncRNA gene predicted gene, 30765
Mwmlpt3 18 16414682 to 16414682 0 QTL Morris water maze latency to platform, training, 3
Mwmlpa3 18 16414682 to 16414682 0 QTL Morris water maze latency to platform, all, 3
Cdh2 18 16588877 to 16809246 220369 - protein coding gene cadherin 2
3100003M19Rik 18 16597563 to 16599553 1990 unclassified non-coding RNA gene RIKEN cDNA 3100003M19 gene
Tssr152542 18 16640585 to 16640595 10 - TSS region transcription start site region 152542
Tssr152543 18 16690535 to 16690548 13 - TSS region transcription start site region 152543
9430011C21Rik 18 16692355 to 16694548 2193 unclassified gene RIKEN cDNA 9430011C21 gene
Gm15485 18 16728733 to 16729678 945 + antisense lncRNA gene predicted gene 15485
Tssr152544 18 16745266 to 16745275 9 - TSS region transcription start site region 152544
Tssr152545 18 16745342 to 16745359 17 - TSS region transcription start site region 152545
Tssr5251 18 16746243 to 16746264 21 - TSS region transcription start site region 5251
Tssr152546 18 16764805 to 16764809 4 - TSS region transcription start site region 152546
Tssr152547 18 16766282 to 16766285 3 - TSS region transcription start site region 152547
Tssr152548 18 16767961 to 16768010 49 - TSS region transcription start site region 152548
Tssr152549 18 16768822 to 16768824 2 - TSS region transcription start site region 152549
Mdq3 18 16786338 to 16786338 0 QTL mammary ductal QTL 3
D18Mit191 18 16794692 to 16794808 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 191
Cpgi9737 18 16806783 to 16809860 3077 CpG island CpG island 9737
Tssr152550 18 16808453 to 16808516 63 - TSS region transcription start site region 152550
Tssr152551 18 16808550 to 16808561 11 - TSS region transcription start site region 152551
Tssr152552 18 16808577 to 16808608 31 - TSS region transcription start site region 152552
Tssr152553 18 16808616 to 16808677 61 - TSS region transcription start site region 152553
Tssr152554 18 16808764 to 16808850 86 - TSS region transcription start site region 152554
Tssr152555 18 16809065 to 16809087 22 - TSS region transcription start site region 152555
Tssr152556 18 16809096 to 16809118 22 - TSS region transcription start site region 152556
Tssr152557 18 16809233 to 16809324 91 - TSS region transcription start site region 152557
Gm15328 18 16816407 to 16822783 6376 + lincRNA gene predicted gene 15328
Gm7670 18 16839317 to 16839957 640 - pseudogene predicted gene 7670