Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:14867568-16117690

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Taf4b 18 14783245 to 14900359 117114 + protein coding gene TATA-box binding protein associated factor 4b
4930543D07Rik 18 14892648 to 14899364 6716 - lncRNA gene RIKEN cDNA 4930543D07 gene
Tssr152509 18 14899365 to 14899383 18 - TSS region transcription start site region 152509
Gm9474 18 14922055 to 14924111 2056 - pseudogene predicted gene 9474
Kctd1 18 14968685 to 15151446 182761 - protein coding gene potassium channel tetramerisation domain containing 1
4933424G05Rik 18 14988995 to 15047987 58992 + lncRNA gene RIKEN cDNA 4933424G05 gene
Tssr150136 18 15011240 to 15011264 24 + TSS region transcription start site region 150136
Gm6304 18 15011246 to 15011692 446 + pseudogene predicted gene 6304
Cpgi9734 18 15061852 to 15065170 3318 CpG island CpG island 9734
Tssr152510 18 15063560 to 15063617 57 - TSS region transcription start site region 152510
Tssr152511 18 15063629 to 15063655 26 - TSS region transcription start site region 152511
Tssr152512 18 15064077 to 15064114 37 - TSS region transcription start site region 152512
Tssr152513 18 15064118 to 15064140 22 - TSS region transcription start site region 152513
Tssr152514 18 15064144 to 15064155 11 - TSS region transcription start site region 152514
Tssr152515 18 15064198 to 15064226 28 - TSS region transcription start site region 152515
Tssr152516 18 15064311 to 15064335 24 - TSS region transcription start site region 152516
Tssr152517 18 15064343 to 15064356 13 - TSS region transcription start site region 152517
Tssr152518 18 15064363 to 15064374 11 - TSS region transcription start site region 152518
Tssr152519 18 15064421 to 15064443 22 - TSS region transcription start site region 152519
Tssr152520 18 15064447 to 15064476 29 - TSS region transcription start site region 152520
Gm30119 18 15149295 to 15150756 1461 + lncRNA gene predicted gene, 30119
Cpgi9735 18 15149735 to 15151447 1712 CpG island CpG island 9735
Tssr150137 18 15150274 to 15150289 15 + TSS region transcription start site region 150137
Tssr150138 18 15150415 to 15150426 11 + TSS region transcription start site region 150138
Tssr150139 18 15150676 to 15150681 5 + TSS region transcription start site region 150139
Tssr152521 18 15151185 to 15151213 28 - TSS region transcription start site region 152521
Tssr152522 18 15151427 to 15151431 4 - TSS region transcription start site region 152522
Tssr150140 18 15194468 to 15194483 15 + TSS region transcription start site region 150140
Tssr5250 18 15194752 to 15194765 13 + TSS region transcription start site region 5250
Tssr150141 18 15195204 to 15195249 45 + TSS region transcription start site region 150141
Tssr150142 18 15195250 to 15195261 11 + TSS region transcription start site region 150142
Tssr150143 18 15195266 to 15195277 11 + TSS region transcription start site region 150143
Tssr150144 18 15195373 to 15195384 11 + TSS region transcription start site region 150144
Tssr150145 18 15195388 to 15195410 22 + TSS region transcription start site region 150145
Gm50035 18 15201112 to 15207791 6679 - lincRNA gene predicted gene, 50035
Tssr152523 18 15207790 to 15207797 7 - TSS region transcription start site region 152523
Gm2629 18 15213100 to 15214264 1164 + pseudogene predicted gene 2629
Gm41672 18 15233049 to 15252008 18959 - lncRNA gene predicted gene, 41672
E430002N23Rik 18 15308858 to 15312699 3841 - unclassified non-coding RNA gene RIKEN cDNA E430002N23 gene
Tssr152524 18 15312693 to 15312733 40 - TSS region transcription start site region 152524
Tssr152525 18 15312738 to 15312752 14 - TSS region transcription start site region 152525
Tssr150146 18 15313458 to 15313465 7 + TSS region transcription start site region 150146
Gm30230 18 15321025 to 15346206 25181 - lncRNA gene predicted gene, 30230
Tssr150147 18 15324949 to 15324957 8 + TSS region transcription start site region 150147
Tssr152526 18 15331797 to 15331825 28 - TSS region transcription start site region 152526
Tssr152527 18 15331857 to 15331871 14 - TSS region transcription start site region 152527
Tssr152528 18 15346195 to 15346200 5 - TSS region transcription start site region 152528
Tssr150148 18 15346346 to 15346365 19 + TSS region transcription start site region 150148
A830021F12Rik 18 15351934 to 15362306 10372 + protein coding gene RIKEN cDNA A830021F12 gene
Aqp4 18 15389496 to 15410982 21486 - protein coding gene aquaporin 4
Tssr152529 18 15402695 to 15402724 29 - TSS region transcription start site region 152529
Tssr152530 18 15402726 to 15402786 60 - TSS region transcription start site region 152530
Gm50048 18 15403087 to 15430790 27703 + antisense lncRNA gene predicted gene, 50048
Tssr152531 18 15403504 to 15403531 27 - TSS region transcription start site region 152531
Tssr152532 18 15403616 to 15403635 19 - TSS region transcription start site region 152532
Tssr152533 18 15403640 to 15403657 17 - TSS region transcription start site region 152533
Tssr152534 18 15403658 to 15403667 9 - TSS region transcription start site region 152534
Tssr152535 18 15403680 to 15403687 7 - TSS region transcription start site region 152535
Tssr152536 18 15403690 to 15403701 11 - TSS region transcription start site region 152536
Gm7650 18 15414474 to 15415367 893 + pseudogene predicted gene 7650
Chst9 18 15451773 to 15718046 266273 - protein coding gene carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
D18Mit170 18 15465747 to 15465844 97 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 170
D18Mit197 18 15492568 to 15492690 122 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 197
D18Mit21 18 15533264 to 15533394 130 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 21
Gm30452 18 15605608 to 15620105 14497 + lncRNA gene predicted gene, 30452
Cpgi9736 18 15759464 to 15760378 914 CpG island CpG island 9736
Tssr152537 18 15760109 to 15760122 13 - TSS region transcription start site region 152537
Tssr152538 18 15760149 to 15760162 13 - TSS region transcription start site region 152538
Tssr152539 18 15822584 to 15822586 2 - TSS region transcription start site region 152539
Tssr150149 18 15832772 to 15832774 2 + TSS region transcription start site region 150149
Gm10036 18 15832794 to 15833327 533 + pseudogene predicted gene 10036
Gm24228 18 15874661 to 15874789 128 + snoRNA gene predicted gene, 24228
D18Mit116 18 15881143 to 15881281 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 116
Gm4835 18 15988368 to 15989339 971 + pseudogene predicted pseudogene 4835
Gm30512 18 16021076 to 16032288 11212 + lncRNA gene predicted gene, 30512
Gm22389 18 16033746 to 16034046 300 + unclassified non-coding RNA gene predicted gene, 22389
Gm41673 18 16037135 to 16039879 2744 - lncRNA gene predicted gene, 41673
Gm30620 18 16043618 to 16115424 71806 - lncRNA gene predicted gene, 30620
Tssr152540 18 16115368 to 16115383 15 - TSS region transcription start site region 152540