Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:12897185-15047188

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Osbpl1a 18 12755314 to 12941841 186527 - protein coding gene oxysterol binding protein-like 1A
Gm5687 18 12898427 to 12899066 639 + pseudogene predicted gene 5687
Cpgi9724 18 12941259 to 12942036 777 CpG island CpG island 9724
Tssr152489 18 12941663 to 12941678 15 - TSS region transcription start site region 152489
Tssr152490 18 12941686 to 12941697 11 - TSS region transcription start site region 152490
Tssr152491 18 12941777 to 12941800 23 - TSS region transcription start site region 152491
Tssr152492 18 12941801 to 12941866 65 - TSS region transcription start site region 152492
Cpgi9725 18 12949278 to 12949496 218 CpG island CpG island 9725
Gm36490 18 12953398 to 12962658 9260 + lncRNA gene predicted gene, 36490
Cpgi9726 18 12955551 to 12956063 512 CpG island CpG island 9726
Tssr152493 18 12955750 to 12955778 28 - TSS region transcription start site region 152493
Tssr150119 18 12955807 to 12955819 12 + TSS region transcription start site region 150119
Tssr150120 18 12955821 to 12955851 30 + TSS region transcription start site region 150120
Gm26407 18 12961499 to 12961805 306 + unclassified non-coding RNA gene predicted gene, 26407
Impact 18 12962942 to 12992950 30008 + protein coding gene impact, RWD domain protein
Tssr150121 18 12972225 to 12972314 89 + TSS region transcription start site region 150121
Cpgi9727 18 12972827 to 12974631 1804 CpG island CpG island 9727
Tssr150122 18 12974418 to 12974437 19 + TSS region transcription start site region 150122
Tssr150123 18 12974503 to 12974586 83 + TSS region transcription start site region 150123
Tssr150124 18 12991526 to 12991531 5 + TSS region transcription start site region 150124
Tssr150125 18 13006935 to 13006950 15 + TSS region transcription start site region 150125
Hrh4 18 13006990 to 13022882 15892 + protein coding gene histamine receptor H4
Tssr152494 18 13122479 to 13122493 14 - TSS region transcription start site region 152494
Gm5240 18 13130675 to 13131561 886 - pseudogene predicted gene 5240
Gm36563 18 13140643 to 13145419 4776 + lncRNA gene predicted gene, 36563
Gm18083 18 13152065 to 13152805 740 - pseudogene predicted gene, 18083
Gm22251 18 13209702 to 13209808 106 - snRNA gene predicted gene, 22251
Gm41669 18 13286047 to 13306338 20291 - lncRNA gene predicted gene, 41669
Cpgi9728 18 13305915 to 13306083 168 CpG island CpG island 9728
D18Mit156 18 13319480 to 13319587 107 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 156
Gm50093 18 13372089 to 13372552 463 + pseudogene predicted gene, 50093
D18Mit169 18 13441795 to 13441912 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 169
Gm36689 18 13447709 to 13456281 8572 + lncRNA gene predicted gene, 36689
Tssr150126 18 13451999 to 13452004 5 + TSS region transcription start site region 150126
Tssr150127 18 13508381 to 13508400 19 + TSS region transcription start site region 150127
Gm36747 18 13508399 to 13524583 16184 + lncRNA gene predicted gene, 36747
Gm36802 18 13524673 to 13542279 17606 - lncRNA gene predicted gene, 36802
Gm41670 18 13546625 to 13601265 54640 - lncRNA gene predicted gene, 41670
D18Mit30 18 13570147 to 13570298 151 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 30
Gm36910 18 13655805 to 13686206 30401 + lncRNA gene predicted gene, 36910
Zfp521 18 13687013 to 13972787 285774 - protein coding gene zinc finger protein 521
Tssr152495 18 13726733 to 13726737 4 - TSS region transcription start site region 152495
Tssr152496 18 13815655 to 13815659 4 - TSS region transcription start site region 152496
Tssr152497 18 13849832 to 13849836 4 - TSS region transcription start site region 152497
D18Mit32 18 13896966 to 13897124 158 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 32
Mom3 18 13896966 to 66965891 53068925 QTL modifier of Min 3
Gm50094 18 13900536 to 13903470 2934 - unclassified gene predicted gene, 50094
Tssr152498 18 13903448 to 13903452 4 - TSS region transcription start site region 152498
Cpgi9729 18 13969974 to 13970858 884 CpG island CpG island 9729
Cpgi9730 18 13971134 to 13971660 526 CpG island CpG island 9730
Tssr152499 18 13972085 to 13972091 6 - TSS region transcription start site region 152499
Tssr152500 18 13972185 to 13972188 3 - TSS region transcription start site region 152500
Cpgi9731 18 13972203 to 13973122 919 CpG island CpG island 9731
Tssr152501 18 13972511 to 13972524 13 - TSS region transcription start site region 152501
Tssr152502 18 13972536 to 13972553 17 - TSS region transcription start site region 152502
Tssr152503 18 13972617 to 13972702 85 - TSS region transcription start site region 152503
Tssr150128 18 13973022 to 13973028 6 + TSS region transcription start site region 150128
6330525I24Rik 18 13998006 to 13999462 1456 unclassified gene RIKEN cDNA 6330525I24 gene
AU018823 18 14069376 to 14070185 809 unclassified gene expressed sequence AU018823
8430422H06Rik 18 14232309 to 14278542 46233 + lncRNA gene RIKEN cDNA 8430422H06 gene
Gm50095 18 14308387 to 14308780 393 + pseudogene predicted gene, 50095
Gm29992 18 14309209 to 14331676 22467 - lncRNA gene predicted gene, 29992
Tssr150129 18 14331855 to 14331867 12 + TSS region transcription start site region 150129
Gm50097 18 14331861 to 14333396 1535 + lincRNA gene predicted gene, 50097
Tssr150130 18 14424821 to 14424823 2 + TSS region transcription start site region 150130
Gm5160 18 14424868 to 14425303 435 + pseudogene predicted gene 5160
Gm10270 18 14491859 to 14492346 487 protein coding gene predicted pseudogene 10270
Gm50098 18 14492005 to 14492243 238 + pseudogene predicted gene, 50098
Gm6457 18 14570147 to 14570638 491 + pseudogene predicted pseudogene 6457
Intmrm3 18 14587509 to 14587699 190 QTL intima/media ratio modifier 3
D18Mit222 18 14587509 to 14587699 190 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 222
Intim3 18 14587509 to 14587699 190 QTL intima modifier 3
Ss18 18 14625629 to 14683002 57373 - protein coding gene SS18, nBAF chromatin remodeling complex subunit
D18Mit92 18 14637009 to 14637143 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 92
D18Mit92.3 18 14637118 to 14637304 186 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 92.3
Gm24924 18 14647767 to 14647930 163 - snRNA gene predicted gene, 24924
Cpgi9732 18 14681795 to 14683437 1642 CpG island CpG island 9732
Tssr152504 18 14682756 to 14682782 26 - TSS region transcription start site region 152504
Tssr152505 18 14683281 to 14683309 28 - TSS region transcription start site region 152505
Tssr152506 18 14683312 to 14683331 19 - TSS region transcription start site region 152506
D18Mit20 18 14702007 to 14702189 182 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 20
Tssr150131 18 14706136 to 14706143 7 + TSS region transcription start site region 150131
Tssr150132 18 14706145 to 14706232 87 + TSS region transcription start site region 150132
Psma8 18 14706151 to 14762301 56150 + protein coding gene proteasome (prosome, macropain) subunit, alpha type, 8
Tssr152507 18 14729333 to 14729336 3 - TSS region transcription start site region 152507
Tssr152508 18 14729347 to 14729358 11 - TSS region transcription start site region 152508
Cpgi9733 18 14782819 to 14784055 1236 CpG island CpG island 9733
Tssr150133 18 14783194 to 14783221 27 + TSS region transcription start site region 150133
Tssr150134 18 14783238 to 14783259 21 + TSS region transcription start site region 150134
Taf4b 18 14783245 to 14900359 117114 + protein coding gene TATA-box binding protein associated factor 4b
Gm21055 18 14830668 to 14832016 1348 + pseudogene predicted gene, 21055
Tssr150135 18 14848006 to 14848007 1 + TSS region transcription start site region 150135
4930543D07Rik 18 14892648 to 14899364 6716 - lncRNA gene RIKEN cDNA 4930543D07 gene
Tssr152509 18 14899365 to 14899383 18 - TSS region transcription start site region 152509
Gm9474 18 14922055 to 14924111 2056 - pseudogene predicted gene 9474
Kctd1 18 14968685 to 15151446 182761 - protein coding gene potassium channel tetramerisation domain containing 1
4933424G05Rik 18 14988995 to 15047987 58992 + lncRNA gene RIKEN cDNA 4933424G05 gene
Tssr150136 18 15011240 to 15011264 24 + TSS region transcription start site region 150136
Gm6304 18 15011246 to 15011692 446 + pseudogene predicted gene 6304