Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:12657942-13297950

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc39c 18 12643533 to 12737052 93519 + protein coding gene tetratricopeptide repeat domain 39C
Tssr150113 18 12662003 to 12662013 10 + TSS region transcription start site region 150113
Mir1948 18 12714811 to 12714895 84 + miRNA gene microRNA 1948
Tssr150114 18 12734809 to 12734813 4 + TSS region transcription start site region 150114
Cabyr 18 12740322 to 12755260 14938 + protein coding gene calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
Cpgi9721 18 12741230 to 12741604 374 CpG island CpG island 9721
Tssr5248 18 12741317 to 12741328 11 + TSS region transcription start site region 5248
Tssr150115 18 12741339 to 12741355 16 + TSS region transcription start site region 150115
Gm7599 18 12742464 to 12743259 795 - pseudogene predicted gene 7599
Tssr150116 18 12743142 to 12743145 3 + TSS region transcription start site region 150116
Tssr5249 18 12744573 to 12744577 4 + TSS region transcription start site region 5249
Osbpl1a 18 12755314 to 12941841 186527 - protein coding gene oxysterol binding protein-like 1A
Gm36439 18 12805180 to 12809065 3885 + lncRNA gene predicted gene, 36439
Tssr152468 18 12819684 to 12819698 14 - TSS region transcription start site region 152468
Tssr152469 18 12819711 to 12819731 20 - TSS region transcription start site region 152469
Tssr152470 18 12819750 to 12819791 41 - TSS region transcription start site region 152470
Tssr152471 18 12819792 to 12819808 16 - TSS region transcription start site region 152471
Tssr152472 18 12819812 to 12819829 17 - TSS region transcription start site region 152472
Tssr152473 18 12819842 to 12819863 21 - TSS region transcription start site region 152473
Tssr152474 18 12819869 to 12819874 5 - TSS region transcription start site region 152474
Tssr152475 18 12847824 to 12847836 12 - TSS region transcription start site region 152475
Tssr152476 18 12860140 to 12860155 15 - TSS region transcription start site region 152476
Tssr152477 18 12860197 to 12860235 38 - TSS region transcription start site region 152477
Cpgi9722 18 12861913 to 12862831 918 CpG island CpG island 9722
Tssr150117 18 12862138 to 12862156 18 + TSS region transcription start site region 150117
Tssr152478 18 12862204 to 12862269 65 - TSS region transcription start site region 152478
Tssr152479 18 12862341 to 12862426 85 - TSS region transcription start site region 152479
Gm49970 18 12862429 to 12865286 2857 + antisense lncRNA gene predicted gene, 49970
Tssr152480 18 12862454 to 12862532 78 - TSS region transcription start site region 152480
Tssr152481 18 12862610 to 12862621 11 - TSS region transcription start site region 152481
Tssr152482 18 12862624 to 12862714 90 - TSS region transcription start site region 152482
Tssr152483 18 12862858 to 12862865 7 - TSS region transcription start site region 152483
Tssr152484 18 12863371 to 12863389 18 - TSS region transcription start site region 152484
Tssr150118 18 12866600 to 12866610 10 + TSS region transcription start site region 150118
Cpgi9723 18 12879763 to 12880016 253 CpG island CpG island 9723
Tssr152485 18 12879962 to 12879970 8 - TSS region transcription start site region 152485
Tssr152486 18 12879973 to 12879981 8 - TSS region transcription start site region 152486
Tssr152487 18 12879984 to 12879991 7 - TSS region transcription start site region 152487
Tssr152488 18 12889076 to 12889102 26 - TSS region transcription start site region 152488
Gm5687 18 12898427 to 12899066 639 + pseudogene predicted gene 5687
Cpgi9724 18 12941259 to 12942036 777 CpG island CpG island 9724
Tssr152489 18 12941663 to 12941678 15 - TSS region transcription start site region 152489
Tssr152490 18 12941686 to 12941697 11 - TSS region transcription start site region 152490
Tssr152491 18 12941777 to 12941800 23 - TSS region transcription start site region 152491
Tssr152492 18 12941801 to 12941866 65 - TSS region transcription start site region 152492
Cpgi9725 18 12949278 to 12949496 218 CpG island CpG island 9725
Gm36490 18 12953398 to 12962658 9260 + lncRNA gene predicted gene, 36490
Cpgi9726 18 12955551 to 12956063 512 CpG island CpG island 9726
Tssr152493 18 12955750 to 12955778 28 - TSS region transcription start site region 152493
Tssr150119 18 12955807 to 12955819 12 + TSS region transcription start site region 150119
Tssr150120 18 12955821 to 12955851 30 + TSS region transcription start site region 150120
Gm26407 18 12961499 to 12961805 306 + unclassified non-coding RNA gene predicted gene, 26407
Impact 18 12962942 to 12992950 30008 + protein coding gene impact, RWD domain protein
Tssr150121 18 12972225 to 12972314 89 + TSS region transcription start site region 150121
Cpgi9727 18 12972827 to 12974631 1804 CpG island CpG island 9727
Tssr150122 18 12974418 to 12974437 19 + TSS region transcription start site region 150122
Tssr150123 18 12974503 to 12974586 83 + TSS region transcription start site region 150123
Tssr150124 18 12991526 to 12991531 5 + TSS region transcription start site region 150124
Tssr150125 18 13006935 to 13006950 15 + TSS region transcription start site region 150125
Hrh4 18 13006990 to 13022882 15892 + protein coding gene histamine receptor H4
Tssr152494 18 13122479 to 13122493 14 - TSS region transcription start site region 152494
Gm5240 18 13130675 to 13131561 886 - pseudogene predicted gene 5240
Gm36563 18 13140643 to 13145419 4776 + lncRNA gene predicted gene, 36563
Gm18083 18 13152065 to 13152805 740 - pseudogene predicted gene, 18083
Gm22251 18 13209702 to 13209808 106 - snRNA gene predicted gene, 22251
Gm41669 18 13286047 to 13306338 20291 - lncRNA gene predicted gene, 41669