Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:12397517-12898419

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lama3 18 12333819 to 12583013 249194 + protein coding gene laminin, alpha 3
D18Mit146 18 12405341 to 12405483 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 146
Gm36232 18 12409559 to 12425262 15703 - lncRNA gene predicted gene, 36232
Tssr150096 18 12410857 to 12410874 17 + TSS region transcription start site region 150096
Tssr152465 18 12425254 to 12425275 21 - TSS region transcription start site region 152465
Tssr5247 18 12490782 to 12490790 8 + TSS region transcription start site region 5247
Tssr150097 18 12490813 to 12490820 7 + TSS region transcription start site region 150097
Gm29199 18 12498688 to 12499462 774 - pseudogene predicted gene 29199
Gm29200 18 12501190 to 12504426 3236 - antisense lncRNA gene predicted gene 29200
Tssr150098 18 12504116 to 12504125 9 + TSS region transcription start site region 150098
Tssr150099 18 12504143 to 12504156 13 + TSS region transcription start site region 150099
Tssr150100 18 12504161 to 12504168 7 + TSS region transcription start site region 150100
Tssr150101 18 12504178 to 12504207 29 + TSS region transcription start site region 150101
Tssr150102 18 12523992 to 12524020 28 + TSS region transcription start site region 150102
Tssr150103 18 12569260 to 12569272 12 + TSS region transcription start site region 150103
Gm22340 18 12578424 to 12578537 113 - rRNA gene predicted gene, 22340
Tssr150104 18 12599894 to 12599925 31 + TSS region transcription start site region 150104
Gm50063 18 12642292 to 12644364 2072 - antisense lncRNA gene predicted gene, 50063
Tssr150105 18 12642596 to 12642609 13 + TSS region transcription start site region 150105
Cpgi9720 18 12643215 to 12644503 1288 CpG island CpG island 9720
Tssr150106 18 12643329 to 12643395 66 + TSS region transcription start site region 150106
Tssr150107 18 12643413 to 12643424 11 + TSS region transcription start site region 150107
Tssr150108 18 12643475 to 12643500 25 + TSS region transcription start site region 150108
Ttc39c 18 12643533 to 12737052 93519 + protein coding gene tetratricopeptide repeat domain 39C
Tssr150109 18 12643742 to 12643822 80 + TSS region transcription start site region 150109
Tssr152466 18 12644359 to 12644376 17 - TSS region transcription start site region 152466
Gm41668 18 12647517 to 12648419 902 - lncRNA gene predicted gene, 41668
Tssr152467 18 12648454 to 12648472 18 - TSS region transcription start site region 152467
Tssr150110 18 12651813 to 12651886 73 + TSS region transcription start site region 150110
Tssr150111 18 12651960 to 12651990 30 + TSS region transcription start site region 150111
Tssr150112 18 12652022 to 12652084 62 + TSS region transcription start site region 150112
Tssr150113 18 12662003 to 12662013 10 + TSS region transcription start site region 150113
Mir1948 18 12714811 to 12714895 84 + miRNA gene microRNA 1948
Tssr150114 18 12734809 to 12734813 4 + TSS region transcription start site region 150114
Cabyr 18 12740322 to 12755260 14938 + protein coding gene calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
Cpgi9721 18 12741230 to 12741604 374 CpG island CpG island 9721
Tssr5248 18 12741317 to 12741328 11 + TSS region transcription start site region 5248
Tssr150115 18 12741339 to 12741355 16 + TSS region transcription start site region 150115
Gm7599 18 12742464 to 12743259 795 - pseudogene predicted gene 7599
Tssr150116 18 12743142 to 12743145 3 + TSS region transcription start site region 150116
Tssr5249 18 12744573 to 12744577 4 + TSS region transcription start site region 5249
Osbpl1a 18 12755314 to 12941841 186527 - protein coding gene oxysterol binding protein-like 1A
Gm36439 18 12805180 to 12809065 3885 + lncRNA gene predicted gene, 36439
Tssr152468 18 12819684 to 12819698 14 - TSS region transcription start site region 152468
Tssr152469 18 12819711 to 12819731 20 - TSS region transcription start site region 152469
Tssr152470 18 12819750 to 12819791 41 - TSS region transcription start site region 152470
Tssr152471 18 12819792 to 12819808 16 - TSS region transcription start site region 152471
Tssr152472 18 12819812 to 12819829 17 - TSS region transcription start site region 152472
Tssr152473 18 12819842 to 12819863 21 - TSS region transcription start site region 152473
Tssr152474 18 12819869 to 12819874 5 - TSS region transcription start site region 152474
Tssr152475 18 12847824 to 12847836 12 - TSS region transcription start site region 152475
Tssr152476 18 12860140 to 12860155 15 - TSS region transcription start site region 152476
Tssr152477 18 12860197 to 12860235 38 - TSS region transcription start site region 152477
Cpgi9722 18 12861913 to 12862831 918 CpG island CpG island 9722
Tssr150117 18 12862138 to 12862156 18 + TSS region transcription start site region 150117
Tssr152478 18 12862204 to 12862269 65 - TSS region transcription start site region 152478
Tssr152479 18 12862341 to 12862426 85 - TSS region transcription start site region 152479
Gm49970 18 12862429 to 12865286 2857 + antisense lncRNA gene predicted gene, 49970
Tssr152480 18 12862454 to 12862532 78 - TSS region transcription start site region 152480
Tssr152481 18 12862610 to 12862621 11 - TSS region transcription start site region 152481
Tssr152482 18 12862624 to 12862714 90 - TSS region transcription start site region 152482
Tssr152483 18 12862858 to 12862865 7 - TSS region transcription start site region 152483
Tssr152484 18 12863371 to 12863389 18 - TSS region transcription start site region 152484
Tssr150118 18 12866600 to 12866610 10 + TSS region transcription start site region 150118
Cpgi9723 18 12879763 to 12880016 253 CpG island CpG island 9723
Tssr152485 18 12879962 to 12879970 8 - TSS region transcription start site region 152485
Tssr152486 18 12879973 to 12879981 8 - TSS region transcription start site region 152486
Tssr152487 18 12879984 to 12879991 7 - TSS region transcription start site region 152487
Tssr152488 18 12889076 to 12889102 26 - TSS region transcription start site region 152488