Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:12205274-18095289

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315 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Npc1 18 12189692 to 12236400 46708 - protein coding gene NPC intracellular cholesterol transporter 1
Tssr152461 18 12213369 to 12213393 24 - TSS region transcription start site region 152461
Tssr152462 18 12220098 to 12220139 41 - TSS region transcription start site region 152462
D18Mit38 18 12230645 to 12230770 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 38
Tssr152463 18 12232719 to 12232731 12 - TSS region transcription start site region 152463
Cpgi9716 18 12235916 to 12236758 842 CpG island CpG island 9716
Tssr152464 18 12236301 to 12236405 104 - TSS region transcription start site region 152464
Ankrd29 18 12252362 to 12305797 53435 - protein coding gene ankyrin repeat domain 29
Tssr150090 18 12256182 to 12256206 24 + TSS region transcription start site region 150090
Tssr150091 18 12256220 to 12256242 22 + TSS region transcription start site region 150091
Tssr150092 18 12256289 to 12256296 7 + TSS region transcription start site region 150092
Cpgi9717 18 12268309 to 12268606 297 CpG island CpG island 9717
Gm16072 18 12287404 to 12289780 2376 + pseudogene predicted gene 16072
Cpgi9718 18 12305353 to 12306082 729 CpG island CpG island 9718
Cpgi9719 18 12333768 to 12334312 544 CpG island CpG island 9719
Lama3 18 12333819 to 12583013 249194 + protein coding gene laminin, alpha 3
Tssr150093 18 12333928 to 12333946 18 + TSS region transcription start site region 150093
Tssr150094 18 12333948 to 12333951 3 + TSS region transcription start site region 150094
Tssr150095 18 12333953 to 12334003 50 + TSS region transcription start site region 150095
Gm29201 18 12365799 to 12366229 430 + pseudogene predicted gene 29201
D18Mit146 18 12405341 to 12405483 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 146
Gm36232 18 12409559 to 12425262 15703 - lncRNA gene predicted gene, 36232
Tssr150096 18 12410857 to 12410874 17 + TSS region transcription start site region 150096
Tssr152465 18 12425254 to 12425275 21 - TSS region transcription start site region 152465
Tssr5247 18 12490782 to 12490790 8 + TSS region transcription start site region 5247
Tssr150097 18 12490813 to 12490820 7 + TSS region transcription start site region 150097
Gm29199 18 12498688 to 12499462 774 - pseudogene predicted gene 29199
Gm29200 18 12501190 to 12504426 3236 - antisense lncRNA gene predicted gene 29200
Tssr150098 18 12504116 to 12504125 9 + TSS region transcription start site region 150098
Tssr150099 18 12504143 to 12504156 13 + TSS region transcription start site region 150099
Tssr150100 18 12504161 to 12504168 7 + TSS region transcription start site region 150100
Tssr150101 18 12504178 to 12504207 29 + TSS region transcription start site region 150101
Tssr150102 18 12523992 to 12524020 28 + TSS region transcription start site region 150102
Tssr150103 18 12569260 to 12569272 12 + TSS region transcription start site region 150103
Gm22340 18 12578424 to 12578537 113 - rRNA gene predicted gene, 22340
Tssr150104 18 12599894 to 12599925 31 + TSS region transcription start site region 150104
Gm50063 18 12642292 to 12644364 2072 - antisense lncRNA gene predicted gene, 50063
Tssr150105 18 12642596 to 12642609 13 + TSS region transcription start site region 150105
Cpgi9720 18 12643215 to 12644503 1288 CpG island CpG island 9720
Tssr150106 18 12643329 to 12643395 66 + TSS region transcription start site region 150106
Tssr150107 18 12643413 to 12643424 11 + TSS region transcription start site region 150107
Tssr150108 18 12643475 to 12643500 25 + TSS region transcription start site region 150108
Ttc39c 18 12643533 to 12737052 93519 + protein coding gene tetratricopeptide repeat domain 39C
Tssr150109 18 12643742 to 12643822 80 + TSS region transcription start site region 150109
Tssr152466 18 12644359 to 12644376 17 - TSS region transcription start site region 152466
Gm41668 18 12647517 to 12648419 902 - lncRNA gene predicted gene, 41668
Tssr152467 18 12648454 to 12648472 18 - TSS region transcription start site region 152467
Tssr150110 18 12651813 to 12651886 73 + TSS region transcription start site region 150110
Tssr150111 18 12651960 to 12651990 30 + TSS region transcription start site region 150111
Tssr150112 18 12652022 to 12652084 62 + TSS region transcription start site region 150112
Tssr150113 18 12662003 to 12662013 10 + TSS region transcription start site region 150113
Mir1948 18 12714811 to 12714895 84 + miRNA gene microRNA 1948
Tssr150114 18 12734809 to 12734813 4 + TSS region transcription start site region 150114
Cabyr 18 12740322 to 12755260 14938 + protein coding gene calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
Cpgi9721 18 12741230 to 12741604 374 CpG island CpG island 9721
Tssr5248 18 12741317 to 12741328 11 + TSS region transcription start site region 5248
Tssr150115 18 12741339 to 12741355 16 + TSS region transcription start site region 150115
Gm7599 18 12742464 to 12743259 795 - pseudogene predicted gene 7599
Tssr150116 18 12743142 to 12743145 3 + TSS region transcription start site region 150116
Tssr5249 18 12744573 to 12744577 4 + TSS region transcription start site region 5249
Osbpl1a 18 12755314 to 12941841 186527 - protein coding gene oxysterol binding protein-like 1A
Gm36439 18 12805180 to 12809065 3885 + lncRNA gene predicted gene, 36439
Tssr152468 18 12819684 to 12819698 14 - TSS region transcription start site region 152468
Tssr152469 18 12819711 to 12819731 20 - TSS region transcription start site region 152469
Tssr152470 18 12819750 to 12819791 41 - TSS region transcription start site region 152470
Tssr152471 18 12819792 to 12819808 16 - TSS region transcription start site region 152471
Tssr152472 18 12819812 to 12819829 17 - TSS region transcription start site region 152472
Tssr152473 18 12819842 to 12819863 21 - TSS region transcription start site region 152473
Tssr152474 18 12819869 to 12819874 5 - TSS region transcription start site region 152474
Tssr152475 18 12847824 to 12847836 12 - TSS region transcription start site region 152475
Tssr152476 18 12860140 to 12860155 15 - TSS region transcription start site region 152476
Tssr152477 18 12860197 to 12860235 38 - TSS region transcription start site region 152477
Cpgi9722 18 12861913 to 12862831 918 CpG island CpG island 9722
Tssr150117 18 12862138 to 12862156 18 + TSS region transcription start site region 150117
Tssr152478 18 12862204 to 12862269 65 - TSS region transcription start site region 152478
Tssr152479 18 12862341 to 12862426 85 - TSS region transcription start site region 152479
Gm49970 18 12862429 to 12865286 2857 + antisense lncRNA gene predicted gene, 49970
Tssr152480 18 12862454 to 12862532 78 - TSS region transcription start site region 152480
Tssr152481 18 12862610 to 12862621 11 - TSS region transcription start site region 152481
Tssr152482 18 12862624 to 12862714 90 - TSS region transcription start site region 152482
Tssr152483 18 12862858 to 12862865 7 - TSS region transcription start site region 152483
Tssr152484 18 12863371 to 12863389 18 - TSS region transcription start site region 152484
Tssr150118 18 12866600 to 12866610 10 + TSS region transcription start site region 150118
Cpgi9723 18 12879763 to 12880016 253 CpG island CpG island 9723
Tssr152485 18 12879962 to 12879970 8 - TSS region transcription start site region 152485
Tssr152486 18 12879973 to 12879981 8 - TSS region transcription start site region 152486
Tssr152487 18 12879984 to 12879991 7 - TSS region transcription start site region 152487
Tssr152488 18 12889076 to 12889102 26 - TSS region transcription start site region 152488
Gm5687 18 12898427 to 12899066 639 + pseudogene predicted gene 5687
Cpgi9724 18 12941259 to 12942036 777 CpG island CpG island 9724
Tssr152489 18 12941663 to 12941678 15 - TSS region transcription start site region 152489
Tssr152490 18 12941686 to 12941697 11 - TSS region transcription start site region 152490
Tssr152491 18 12941777 to 12941800 23 - TSS region transcription start site region 152491
Tssr152492 18 12941801 to 12941866 65 - TSS region transcription start site region 152492
Cpgi9725 18 12949278 to 12949496 218 CpG island CpG island 9725
Gm36490 18 12953398 to 12962658 9260 + lncRNA gene predicted gene, 36490
Cpgi9726 18 12955551 to 12956063 512 CpG island CpG island 9726
Tssr152493 18 12955750 to 12955778 28 - TSS region transcription start site region 152493
Tssr150119 18 12955807 to 12955819 12 + TSS region transcription start site region 150119
Tssr150120 18 12955821 to 12955851 30 + TSS region transcription start site region 150120
Gm26407 18 12961499 to 12961805 306 + unclassified non-coding RNA gene predicted gene, 26407
Impact 18 12962942 to 12992950 30008 + protein coding gene impact, RWD domain protein
Tssr150121 18 12972225 to 12972314 89 + TSS region transcription start site region 150121
Cpgi9727 18 12972827 to 12974631 1804 CpG island CpG island 9727
Tssr150122 18 12974418 to 12974437 19 + TSS region transcription start site region 150122
Tssr150123 18 12974503 to 12974586 83 + TSS region transcription start site region 150123
Tssr150124 18 12991526 to 12991531 5 + TSS region transcription start site region 150124
Tssr150125 18 13006935 to 13006950 15 + TSS region transcription start site region 150125
Hrh4 18 13006990 to 13022882 15892 + protein coding gene histamine receptor H4
Tssr152494 18 13122479 to 13122493 14 - TSS region transcription start site region 152494
Gm5240 18 13130675 to 13131561 886 - pseudogene predicted gene 5240
Gm36563 18 13140643 to 13145419 4776 + lncRNA gene predicted gene, 36563
Gm18083 18 13152065 to 13152805 740 - pseudogene predicted gene, 18083
Gm22251 18 13209702 to 13209808 106 - snRNA gene predicted gene, 22251
Gm41669 18 13286047 to 13306338 20291 - lncRNA gene predicted gene, 41669
Cpgi9728 18 13305915 to 13306083 168 CpG island CpG island 9728
D18Mit156 18 13319480 to 13319587 107 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 156
Gm50093 18 13372089 to 13372552 463 + pseudogene predicted gene, 50093
D18Mit169 18 13441795 to 13441912 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 169
Gm36689 18 13447709 to 13456281 8572 + lncRNA gene predicted gene, 36689
Tssr150126 18 13451999 to 13452004 5 + TSS region transcription start site region 150126
Tssr150127 18 13508381 to 13508400 19 + TSS region transcription start site region 150127
Gm36747 18 13508399 to 13524583 16184 + lncRNA gene predicted gene, 36747
Gm36802 18 13524673 to 13542279 17606 - lncRNA gene predicted gene, 36802
Gm41670 18 13546625 to 13601265 54640 - lncRNA gene predicted gene, 41670
D18Mit30 18 13570147 to 13570298 151 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 30
Gm36910 18 13655805 to 13686206 30401 + lncRNA gene predicted gene, 36910
Zfp521 18 13687013 to 13972787 285774 - protein coding gene zinc finger protein 521
Tssr152495 18 13726733 to 13726737 4 - TSS region transcription start site region 152495
Tssr152496 18 13815655 to 13815659 4 - TSS region transcription start site region 152496
Tssr152497 18 13849832 to 13849836 4 - TSS region transcription start site region 152497
Mom3 18 13896966 to 66965891 53068925 QTL modifier of Min 3
D18Mit32 18 13896966 to 13897124 158 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 32
Gm50094 18 13900536 to 13903470 2934 - unclassified gene predicted gene, 50094
Tssr152498 18 13903448 to 13903452 4 - TSS region transcription start site region 152498
Cpgi9729 18 13969974 to 13970858 884 CpG island CpG island 9729
Cpgi9730 18 13971134 to 13971660 526 CpG island CpG island 9730
Tssr152499 18 13972085 to 13972091 6 - TSS region transcription start site region 152499
Tssr152500 18 13972185 to 13972188 3 - TSS region transcription start site region 152500
Cpgi9731 18 13972203 to 13973122 919 CpG island CpG island 9731
Tssr152501 18 13972511 to 13972524 13 - TSS region transcription start site region 152501
Tssr152502 18 13972536 to 13972553 17 - TSS region transcription start site region 152502
Tssr152503 18 13972617 to 13972702 85 - TSS region transcription start site region 152503
Tssr150128 18 13973022 to 13973028 6 + TSS region transcription start site region 150128
6330525I24Rik 18 13998006 to 13999462 1456 unclassified gene RIKEN cDNA 6330525I24 gene
AU018823 18 14069376 to 14070185 809 unclassified gene expressed sequence AU018823
8430422H06Rik 18 14232309 to 14278542 46233 + lncRNA gene RIKEN cDNA 8430422H06 gene
Gm50095 18 14308387 to 14308780 393 + pseudogene predicted gene, 50095
Gm29992 18 14309209 to 14331676 22467 - lncRNA gene predicted gene, 29992
Tssr150129 18 14331855 to 14331867 12 + TSS region transcription start site region 150129
Gm50097 18 14331861 to 14333396 1535 + lincRNA gene predicted gene, 50097
Tssr150130 18 14424821 to 14424823 2 + TSS region transcription start site region 150130
Gm5160 18 14424868 to 14425303 435 + pseudogene predicted gene 5160
Gm10270 18 14491859 to 14492346 487 protein coding gene predicted pseudogene 10270
Gm50098 18 14492005 to 14492243 238 + pseudogene predicted gene, 50098
Gm6457 18 14570147 to 14570638 491 + pseudogene predicted pseudogene 6457
Intim3 18 14587509 to 14587699 190 QTL intima modifier 3
Intmrm3 18 14587509 to 14587699 190 QTL intima/media ratio modifier 3
D18Mit222 18 14587509 to 14587699 190 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 222
Ss18 18 14625629 to 14683002 57373 - protein coding gene SS18, nBAF chromatin remodeling complex subunit
D18Mit92 18 14637009 to 14637143 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 92
D18Mit92.3 18 14637118 to 14637304 186 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 92.3
Gm24924 18 14647767 to 14647930 163 - snRNA gene predicted gene, 24924
Cpgi9732 18 14681795 to 14683437 1642 CpG island CpG island 9732
Tssr152504 18 14682756 to 14682782 26 - TSS region transcription start site region 152504
Tssr152505 18 14683281 to 14683309 28 - TSS region transcription start site region 152505
Tssr152506 18 14683312 to 14683331 19 - TSS region transcription start site region 152506
D18Mit20 18 14702007 to 14702189 182 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 20
Tssr150131 18 14706136 to 14706143 7 + TSS region transcription start site region 150131
Tssr150132 18 14706145 to 14706232 87 + TSS region transcription start site region 150132
Psma8 18 14706151 to 14762301 56150 + protein coding gene proteasome (prosome, macropain) subunit, alpha type, 8
Tssr152507 18 14729333 to 14729336 3 - TSS region transcription start site region 152507
Tssr152508 18 14729347 to 14729358 11 - TSS region transcription start site region 152508
Cpgi9733 18 14782819 to 14784055 1236 CpG island CpG island 9733
Tssr150133 18 14783194 to 14783221 27 + TSS region transcription start site region 150133
Tssr150134 18 14783238 to 14783259 21 + TSS region transcription start site region 150134
Taf4b 18 14783245 to 14900359 117114 + protein coding gene TATA-box binding protein associated factor 4b
Gm21055 18 14830668 to 14832016 1348 + pseudogene predicted gene, 21055
Tssr150135 18 14848006 to 14848007 1 + TSS region transcription start site region 150135
4930543D07Rik 18 14892648 to 14899364 6716 - lncRNA gene RIKEN cDNA 4930543D07 gene
Tssr152509 18 14899365 to 14899383 18 - TSS region transcription start site region 152509
Gm9474 18 14922055 to 14924111 2056 - pseudogene predicted gene 9474
Kctd1 18 14968685 to 15151446 182761 - protein coding gene potassium channel tetramerisation domain containing 1
4933424G05Rik 18 14988995 to 15047987 58992 + lncRNA gene RIKEN cDNA 4933424G05 gene
Tssr150136 18 15011240 to 15011264 24 + TSS region transcription start site region 150136
Gm6304 18 15011246 to 15011692 446 + pseudogene predicted gene 6304
Cpgi9734 18 15061852 to 15065170 3318 CpG island CpG island 9734
Tssr152510 18 15063560 to 15063617 57 - TSS region transcription start site region 152510
Tssr152511 18 15063629 to 15063655 26 - TSS region transcription start site region 152511
Tssr152512 18 15064077 to 15064114 37 - TSS region transcription start site region 152512
Tssr152513 18 15064118 to 15064140 22 - TSS region transcription start site region 152513
Tssr152514 18 15064144 to 15064155 11 - TSS region transcription start site region 152514
Tssr152515 18 15064198 to 15064226 28 - TSS region transcription start site region 152515
Tssr152516 18 15064311 to 15064335 24 - TSS region transcription start site region 152516
Tssr152517 18 15064343 to 15064356 13 - TSS region transcription start site region 152517
Tssr152518 18 15064363 to 15064374 11 - TSS region transcription start site region 152518
Tssr152519 18 15064421 to 15064443 22 - TSS region transcription start site region 152519
Tssr152520 18 15064447 to 15064476 29 - TSS region transcription start site region 152520
Gm30119 18 15149295 to 15150756 1461 + lncRNA gene predicted gene, 30119
Cpgi9735 18 15149735 to 15151447 1712 CpG island CpG island 9735