Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:12129869-13509874

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Riok3 18 12128741 to 12157387 28646 + protein coding gene RIO kinase 3
Tssr150084 18 12135845 to 12135867 22 + TSS region transcription start site region 150084
D18Mit229 18 12145757 to 12145876 119 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 229
Tssr150085 18 12147265 to 12147268 3 + TSS region transcription start site region 150085
Tssr150086 18 12158857 to 12158867 10 + TSS region transcription start site region 150086
Tssr150087 18 12163435 to 12163439 4 + TSS region transcription start site region 150087
Gm25289 18 12163438 to 12163556 118 + snRNA gene predicted gene, 25289
Cpgi9715 18 12168326 to 12169166 840 CpG island CpG island 9715
Tssr150088 18 12168711 to 12168791 80 + TSS region transcription start site region 150088
Rmc1 18 12168717 to 12190658 21941 + protein coding gene regulator of MON1-CCZ1
Gm19293 18 12173159 to 12174927 1768 + pseudogene predicted gene, 19293
Tssr150089 18 12173553 to 12173567 14 + TSS region transcription start site region 150089
Tssr5246 18 12183864 to 12183874 10 + TSS region transcription start site region 5246
Npc1 18 12189692 to 12236400 46708 - protein coding gene NPC intracellular cholesterol transporter 1
Tssr152458 18 12190379 to 12190398 19 - TSS region transcription start site region 152458
Tssr152459 18 12190997 to 12191000 3 - TSS region transcription start site region 152459
Gm15956 18 12193768 to 12198675 4907 + antisense lncRNA gene predicted gene 15956
Tssr152460 18 12195120 to 12195165 45 - TSS region transcription start site region 152460
Tssr152461 18 12213369 to 12213393 24 - TSS region transcription start site region 152461
Tssr152462 18 12220098 to 12220139 41 - TSS region transcription start site region 152462
D18Mit38 18 12230645 to 12230770 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 38
Tssr152463 18 12232719 to 12232731 12 - TSS region transcription start site region 152463
Cpgi9716 18 12235916 to 12236758 842 CpG island CpG island 9716
Tssr152464 18 12236301 to 12236405 104 - TSS region transcription start site region 152464
Ankrd29 18 12252362 to 12305797 53435 - protein coding gene ankyrin repeat domain 29
Tssr150090 18 12256182 to 12256206 24 + TSS region transcription start site region 150090
Tssr150091 18 12256220 to 12256242 22 + TSS region transcription start site region 150091
Tssr150092 18 12256289 to 12256296 7 + TSS region transcription start site region 150092
Cpgi9717 18 12268309 to 12268606 297 CpG island CpG island 9717
Gm16072 18 12287404 to 12289780 2376 + pseudogene predicted gene 16072
Cpgi9718 18 12305353 to 12306082 729 CpG island CpG island 9718
Cpgi9719 18 12333768 to 12334312 544 CpG island CpG island 9719
Lama3 18 12333819 to 12583013 249194 + protein coding gene laminin, alpha 3
Tssr150093 18 12333928 to 12333946 18 + TSS region transcription start site region 150093
Tssr150094 18 12333948 to 12333951 3 + TSS region transcription start site region 150094
Tssr150095 18 12333953 to 12334003 50 + TSS region transcription start site region 150095
Gm29201 18 12365799 to 12366229 430 + pseudogene predicted gene 29201
D18Mit146 18 12405341 to 12405483 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 146
Gm36232 18 12409559 to 12425262 15703 - lncRNA gene predicted gene, 36232
Tssr150096 18 12410857 to 12410874 17 + TSS region transcription start site region 150096
Tssr152465 18 12425254 to 12425275 21 - TSS region transcription start site region 152465
Tssr5247 18 12490782 to 12490790 8 + TSS region transcription start site region 5247
Tssr150097 18 12490813 to 12490820 7 + TSS region transcription start site region 150097
Gm29199 18 12498688 to 12499462 774 - pseudogene predicted gene 29199
Gm29200 18 12501190 to 12504426 3236 - antisense lncRNA gene predicted gene 29200
Tssr150098 18 12504116 to 12504125 9 + TSS region transcription start site region 150098
Tssr150099 18 12504143 to 12504156 13 + TSS region transcription start site region 150099
Tssr150100 18 12504161 to 12504168 7 + TSS region transcription start site region 150100
Tssr150101 18 12504178 to 12504207 29 + TSS region transcription start site region 150101
Tssr150102 18 12523992 to 12524020 28 + TSS region transcription start site region 150102
Tssr150103 18 12569260 to 12569272 12 + TSS region transcription start site region 150103
Gm22340 18 12578424 to 12578537 113 - rRNA gene predicted gene, 22340
Tssr150104 18 12599894 to 12599925 31 + TSS region transcription start site region 150104
Gm50063 18 12642292 to 12644364 2072 - antisense lncRNA gene predicted gene, 50063
Tssr150105 18 12642596 to 12642609 13 + TSS region transcription start site region 150105
Cpgi9720 18 12643215 to 12644503 1288 CpG island CpG island 9720
Tssr150106 18 12643329 to 12643395 66 + TSS region transcription start site region 150106
Tssr150107 18 12643413 to 12643424 11 + TSS region transcription start site region 150107
Tssr150108 18 12643475 to 12643500 25 + TSS region transcription start site region 150108
Ttc39c 18 12643533 to 12737052 93519 + protein coding gene tetratricopeptide repeat domain 39C
Tssr150109 18 12643742 to 12643822 80 + TSS region transcription start site region 150109
Tssr152466 18 12644359 to 12644376 17 - TSS region transcription start site region 152466
Gm41668 18 12647517 to 12648419 902 - lncRNA gene predicted gene, 41668
Tssr152467 18 12648454 to 12648472 18 - TSS region transcription start site region 152467
Tssr150110 18 12651813 to 12651886 73 + TSS region transcription start site region 150110
Tssr150111 18 12651960 to 12651990 30 + TSS region transcription start site region 150111
Tssr150112 18 12652022 to 12652084 62 + TSS region transcription start site region 150112
Tssr150113 18 12662003 to 12662013 10 + TSS region transcription start site region 150113
Mir1948 18 12714811 to 12714895 84 + miRNA gene microRNA 1948
Tssr150114 18 12734809 to 12734813 4 + TSS region transcription start site region 150114
Cabyr 18 12740322 to 12755260 14938 + protein coding gene calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
Cpgi9721 18 12741230 to 12741604 374 CpG island CpG island 9721
Tssr5248 18 12741317 to 12741328 11 + TSS region transcription start site region 5248
Tssr150115 18 12741339 to 12741355 16 + TSS region transcription start site region 150115
Gm7599 18 12742464 to 12743259 795 - pseudogene predicted gene 7599
Tssr150116 18 12743142 to 12743145 3 + TSS region transcription start site region 150116
Tssr5249 18 12744573 to 12744577 4 + TSS region transcription start site region 5249
Osbpl1a 18 12755314 to 12941841 186527 - protein coding gene oxysterol binding protein-like 1A
Gm36439 18 12805180 to 12809065 3885 + lncRNA gene predicted gene, 36439
Tssr152468 18 12819684 to 12819698 14 - TSS region transcription start site region 152468
Tssr152469 18 12819711 to 12819731 20 - TSS region transcription start site region 152469
Tssr152470 18 12819750 to 12819791 41 - TSS region transcription start site region 152470
Tssr152471 18 12819792 to 12819808 16 - TSS region transcription start site region 152471
Tssr152472 18 12819812 to 12819829 17 - TSS region transcription start site region 152472
Tssr152473 18 12819842 to 12819863 21 - TSS region transcription start site region 152473
Tssr152474 18 12819869 to 12819874 5 - TSS region transcription start site region 152474
Tssr152475 18 12847824 to 12847836 12 - TSS region transcription start site region 152475
Tssr152476 18 12860140 to 12860155 15 - TSS region transcription start site region 152476
Tssr152477 18 12860197 to 12860235 38 - TSS region transcription start site region 152477
Cpgi9722 18 12861913 to 12862831 918 CpG island CpG island 9722
Tssr150117 18 12862138 to 12862156 18 + TSS region transcription start site region 150117
Tssr152478 18 12862204 to 12862269 65 - TSS region transcription start site region 152478
Tssr152479 18 12862341 to 12862426 85 - TSS region transcription start site region 152479
Gm49970 18 12862429 to 12865286 2857 + antisense lncRNA gene predicted gene, 49970
Tssr152480 18 12862454 to 12862532 78 - TSS region transcription start site region 152480
Tssr152481 18 12862610 to 12862621 11 - TSS region transcription start site region 152481
Tssr152482 18 12862624 to 12862714 90 - TSS region transcription start site region 152482
Tssr152483 18 12862858 to 12862865 7 - TSS region transcription start site region 152483
Tssr152484 18 12863371 to 12863389 18 - TSS region transcription start site region 152484
Tssr150118 18 12866600 to 12866610 10 + TSS region transcription start site region 150118
Cpgi9723 18 12879763 to 12880016 253 CpG island CpG island 9723
Tssr152485 18 12879962 to 12879970 8 - TSS region transcription start site region 152485
Tssr152486 18 12879973 to 12879981 8 - TSS region transcription start site region 152486
Tssr152487 18 12879984 to 12879991 7 - TSS region transcription start site region 152487
Tssr152488 18 12889076 to 12889102 26 - TSS region transcription start site region 152488
Gm5687 18 12898427 to 12899066 639 + pseudogene predicted gene 5687
Cpgi9724 18 12941259 to 12942036 777 CpG island CpG island 9724
Tssr152489 18 12941663 to 12941678 15 - TSS region transcription start site region 152489
Tssr152490 18 12941686 to 12941697 11 - TSS region transcription start site region 152490
Tssr152491 18 12941777 to 12941800 23 - TSS region transcription start site region 152491
Tssr152492 18 12941801 to 12941866 65 - TSS region transcription start site region 152492
Cpgi9725 18 12949278 to 12949496 218 CpG island CpG island 9725
Gm36490 18 12953398 to 12962658 9260 + lncRNA gene predicted gene, 36490
Cpgi9726 18 12955551 to 12956063 512 CpG island CpG island 9726
Tssr152493 18 12955750 to 12955778 28 - TSS region transcription start site region 152493
Tssr150119 18 12955807 to 12955819 12 + TSS region transcription start site region 150119
Tssr150120 18 12955821 to 12955851 30 + TSS region transcription start site region 150120
Gm26407 18 12961499 to 12961805 306 + unclassified non-coding RNA gene predicted gene, 26407
Impact 18 12962942 to 12992950 30008 + protein coding gene impact, RWD domain protein
Tssr150121 18 12972225 to 12972314 89 + TSS region transcription start site region 150121
Cpgi9727 18 12972827 to 12974631 1804 CpG island CpG island 9727
Tssr150122 18 12974418 to 12974437 19 + TSS region transcription start site region 150122
Tssr150123 18 12974503 to 12974586 83 + TSS region transcription start site region 150123
Tssr150124 18 12991526 to 12991531 5 + TSS region transcription start site region 150124
Tssr150125 18 13006935 to 13006950 15 + TSS region transcription start site region 150125
Hrh4 18 13006990 to 13022882 15892 + protein coding gene histamine receptor H4
Tssr152494 18 13122479 to 13122493 14 - TSS region transcription start site region 152494
Gm5240 18 13130675 to 13131561 886 - pseudogene predicted gene 5240
Gm36563 18 13140643 to 13145419 4776 + lncRNA gene predicted gene, 36563
Gm18083 18 13152065 to 13152805 740 - pseudogene predicted gene, 18083
Gm22251 18 13209702 to 13209808 106 - snRNA gene predicted gene, 22251
Gm41669 18 13286047 to 13306338 20291 - lncRNA gene predicted gene, 41669
Cpgi9728 18 13305915 to 13306083 168 CpG island CpG island 9728
D18Mit156 18 13319480 to 13319587 107 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 156
Gm50093 18 13372089 to 13372552 463 + pseudogene predicted gene, 50093
D18Mit169 18 13441795 to 13441912 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 169
Gm36689 18 13447709 to 13456281 8572 + lncRNA gene predicted gene, 36689
Tssr150126 18 13451999 to 13452004 5 + TSS region transcription start site region 150126
Tssr150127 18 13508381 to 13508400 19 + TSS region transcription start site region 150127
Gm36747 18 13508399 to 13524583 16184 + lncRNA gene predicted gene, 36747