Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:11805136-12296556

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41665 18 11815710 to 11819149 3439 + lncRNA gene predicted gene, 41665
Gm6277 18 11821088 to 11839377 18289 - antisense lncRNA gene predicted gene 6277
Cpgi9712 18 11839025 to 11840943 1918 CpG island CpG island 9712
Cables1 18 11839274 to 11945627 106353 + protein coding gene CDK5 and Abl enzyme substrate 1
Tssr150074 18 11839416 to 11839475 59 + TSS region transcription start site region 150074
Tssr150075 18 11839495 to 11839519 24 + TSS region transcription start site region 150075
Tssr150076 18 11839536 to 11839551 15 + TSS region transcription start site region 150076
Mir1901 18 11840361 to 11840438 77 - miRNA gene microRNA 1901
Tssr152452 18 11858039 to 11858040 1 - TSS region transcription start site region 152452
D18Ertd289e 18 11875788 to 11875991 203 DNA segment DNA segment, Chr 18, ERATO Doi 289, expressed
Gm49968 18 11913131 to 11915903 2772 + unclassified gene predicted gene, 49968
Tssr150077 18 11918059 to 11918063 4 + TSS region transcription start site region 150077
Tssr150078 18 11924955 to 11924959 4 + TSS region transcription start site region 150078
6330412A17Rik 18 11929774 to 11932375 2601 unclassified gene RIKEN cDNA 6330412A17 gene
Tssr150079 18 11947251 to 11947280 29 + TSS region transcription start site region 150079
Gm41666 18 11949342 to 11950435 1093 + lncRNA gene predicted gene, 41666
Tssr152453 18 11967138 to 11967156 18 - TSS region transcription start site region 152453
Tmem241 18 11980136 to 12121556 141420 - protein coding gene transmembrane protein 241
D18Mit67 18 12007997 to 12008120 123 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 67
Tssr152454 18 12061421 to 12061432 11 - TSS region transcription start site region 152454
F830003O12Rik 18 12087999 to 12090264 2265 unclassified non-coding RNA gene RIKEN cDNA F830003O12 gene
Cpgi9713 18 12121165 to 12121711 546 CpG island CpG island 9713
Tssr152455 18 12121460 to 12121492 32 - TSS region transcription start site region 152455
Tssr152456 18 12121506 to 12121541 35 - TSS region transcription start site region 152456
Gm41667 18 12121591 to 12122470 879 + lncRNA gene predicted gene, 41667
Cpgi9714 18 12128413 to 12129300 887 CpG island CpG island 9714
Tssr150080 18 12128594 to 12128606 12 + TSS region transcription start site region 150080
Tssr152457 18 12128626 to 12128644 18 - TSS region transcription start site region 152457
Riok3 18 12128741 to 12157387 28646 + protein coding gene RIO kinase 3
Tssr150081 18 12128742 to 12128807 65 + TSS region transcription start site region 150081
Tssr150082 18 12128819 to 12128828 9 + TSS region transcription start site region 150082
Tssr150083 18 12128852 to 12128868 16 + TSS region transcription start site region 150083
Tssr150084 18 12135845 to 12135867 22 + TSS region transcription start site region 150084
D18Mit229 18 12145757 to 12145876 119 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 229
Tssr150085 18 12147265 to 12147268 3 + TSS region transcription start site region 150085
Tssr150086 18 12158857 to 12158867 10 + TSS region transcription start site region 150086
Tssr150087 18 12163435 to 12163439 4 + TSS region transcription start site region 150087
Gm25289 18 12163438 to 12163556 118 + snRNA gene predicted gene, 25289
Cpgi9715 18 12168326 to 12169166 840 CpG island CpG island 9715
Tssr150088 18 12168711 to 12168791 80 + TSS region transcription start site region 150088
Rmc1 18 12168717 to 12190658 21941 + protein coding gene regulator of MON1-CCZ1
Gm19293 18 12173159 to 12174927 1768 + pseudogene predicted gene, 19293
Tssr150089 18 12173553 to 12173567 14 + TSS region transcription start site region 150089
Tssr5246 18 12183864 to 12183874 10 + TSS region transcription start site region 5246
Npc1 18 12189692 to 12236400 46708 - protein coding gene NPC intracellular cholesterol transporter 1
Tssr152458 18 12190379 to 12190398 19 - TSS region transcription start site region 152458
Tssr152459 18 12190997 to 12191000 3 - TSS region transcription start site region 152459
Gm15956 18 12193768 to 12198675 4907 + antisense lncRNA gene predicted gene 15956
Tssr152460 18 12195120 to 12195165 45 - TSS region transcription start site region 152460
Tssr152461 18 12213369 to 12213393 24 - TSS region transcription start site region 152461
Tssr152462 18 12220098 to 12220139 41 - TSS region transcription start site region 152462
D18Mit38 18 12230645 to 12230770 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 38
Tssr152463 18 12232719 to 12232731 12 - TSS region transcription start site region 152463
Cpgi9716 18 12235916 to 12236758 842 CpG island CpG island 9716
Tssr152464 18 12236301 to 12236405 104 - TSS region transcription start site region 152464
Ankrd29 18 12252362 to 12305797 53435 - protein coding gene ankyrin repeat domain 29
Tssr150090 18 12256182 to 12256206 24 + TSS region transcription start site region 150090
Tssr150091 18 12256220 to 12256242 22 + TSS region transcription start site region 150091
Tssr150092 18 12256289 to 12256296 7 + TSS region transcription start site region 150092
Cpgi9717 18 12268309 to 12268606 297 CpG island CpG island 9717
Gm16072 18 12287404 to 12289780 2376 + pseudogene predicted gene 16072