Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:11115420-12197784

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D18Mit31 18 11196303 to 11196417 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 31
Cpgi9709 18 11239641 to 11240267 626 CpG island CpG island 9709
Cpgi9710 18 11351902 to 11352534 632 CpG island CpG island 9710
Gm35918 18 11399652 to 11401895 2243 - lncRNA gene predicted gene, 35918
Gm50067 18 11624915 to 11625507 592 + pseudogene predicted gene, 50067
Rbbp8 18 11633276 to 11743207 109931 + protein coding gene retinoblastoma binding protein 8, endonuclease
Tssr150066 18 11633340 to 11633357 17 + TSS region transcription start site region 150066
Tssr150067 18 11633363 to 11633381 18 + TSS region transcription start site region 150067
Gm50069 18 11655420 to 11657784 2364 - antisense lncRNA gene predicted gene, 50069
Cpgi9711 18 11656997 to 11658348 1351 CpG island CpG island 9711
Tssr150068 18 11657352 to 11657486 134 + TSS region transcription start site region 150068
Tssr150069 18 11657489 to 11657502 13 + TSS region transcription start site region 150069
Tssr150070 18 11657521 to 11657553 32 + TSS region transcription start site region 150070
Tssr152451 18 11657745 to 11657756 11 - TSS region transcription start site region 152451
Tssr150071 18 11657831 to 11657876 45 + TSS region transcription start site region 150071
Tssr150072 18 11722648 to 11722667 19 + TSS region transcription start site region 150072
Gm18713 18 11752279 to 11752555 276 - pseudogene predicted gene, 18713
Mom21 18 11760619 to 11760766 147 QTL modifier of Min 21
D18Mit110 18 11760619 to 11760766 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 110
D18Ua1 18 11783287 to 11783465 178 DNA segment DNA segment, Chr 18, University of Arizona 1
Tssr150073 18 11787192 to 11787196 4 + TSS region transcription start site region 150073
Gm41665 18 11815710 to 11819149 3439 + lncRNA gene predicted gene, 41665
Gm6277 18 11821088 to 11839377 18289 - antisense lncRNA gene predicted gene 6277
Cpgi9712 18 11839025 to 11840943 1918 CpG island CpG island 9712
Cables1 18 11839274 to 11945627 106353 + protein coding gene CDK5 and Abl enzyme substrate 1
Tssr150074 18 11839416 to 11839475 59 + TSS region transcription start site region 150074
Tssr150075 18 11839495 to 11839519 24 + TSS region transcription start site region 150075
Tssr150076 18 11839536 to 11839551 15 + TSS region transcription start site region 150076
Mir1901 18 11840361 to 11840438 77 - miRNA gene microRNA 1901
Tssr152452 18 11858039 to 11858040 1 - TSS region transcription start site region 152452
D18Ertd289e 18 11875788 to 11875991 203 DNA segment DNA segment, Chr 18, ERATO Doi 289, expressed
Gm49968 18 11913131 to 11915903 2772 + unclassified gene predicted gene, 49968
Tssr150077 18 11918059 to 11918063 4 + TSS region transcription start site region 150077
Tssr150078 18 11924955 to 11924959 4 + TSS region transcription start site region 150078
6330412A17Rik 18 11929774 to 11932375 2601 unclassified gene RIKEN cDNA 6330412A17 gene
Tssr150079 18 11947251 to 11947280 29 + TSS region transcription start site region 150079
Gm41666 18 11949342 to 11950435 1093 + lncRNA gene predicted gene, 41666
Tssr152453 18 11967138 to 11967156 18 - TSS region transcription start site region 152453
Tmem241 18 11980136 to 12121556 141420 - protein coding gene transmembrane protein 241
D18Mit67 18 12007997 to 12008120 123 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 67
Tssr152454 18 12061421 to 12061432 11 - TSS region transcription start site region 152454
F830003O12Rik 18 12087999 to 12090264 2265 unclassified non-coding RNA gene RIKEN cDNA F830003O12 gene
Cpgi9713 18 12121165 to 12121711 546 CpG island CpG island 9713
Tssr152455 18 12121460 to 12121492 32 - TSS region transcription start site region 152455
Tssr152456 18 12121506 to 12121541 35 - TSS region transcription start site region 152456
Gm41667 18 12121591 to 12122470 879 + lncRNA gene predicted gene, 41667
Cpgi9714 18 12128413 to 12129300 887 CpG island CpG island 9714
Tssr150080 18 12128594 to 12128606 12 + TSS region transcription start site region 150080
Tssr152457 18 12128626 to 12128644 18 - TSS region transcription start site region 152457
Riok3 18 12128741 to 12157387 28646 + protein coding gene RIO kinase 3
Tssr150081 18 12128742 to 12128807 65 + TSS region transcription start site region 150081
Tssr150082 18 12128819 to 12128828 9 + TSS region transcription start site region 150082
Tssr150083 18 12128852 to 12128868 16 + TSS region transcription start site region 150083
Tssr150084 18 12135845 to 12135867 22 + TSS region transcription start site region 150084
D18Mit229 18 12145757 to 12145876 119 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 229
Tssr150085 18 12147265 to 12147268 3 + TSS region transcription start site region 150085
Tssr150086 18 12158857 to 12158867 10 + TSS region transcription start site region 150086
Tssr150087 18 12163435 to 12163439 4 + TSS region transcription start site region 150087
Gm25289 18 12163438 to 12163556 118 + snRNA gene predicted gene, 25289
Cpgi9715 18 12168326 to 12169166 840 CpG island CpG island 9715
Tssr150088 18 12168711 to 12168791 80 + TSS region transcription start site region 150088
Rmc1 18 12168717 to 12190658 21941 + protein coding gene regulator of MON1-CCZ1
Gm19293 18 12173159 to 12174927 1768 + pseudogene predicted gene, 19293
Tssr150089 18 12173553 to 12173567 14 + TSS region transcription start site region 150089
Tssr5246 18 12183864 to 12183874 10 + TSS region transcription start site region 5246
Npc1 18 12189692 to 12236400 46708 - protein coding gene NPC intracellular cholesterol transporter 1
Tssr152458 18 12190379 to 12190398 19 - TSS region transcription start site region 152458
Tssr152459 18 12190997 to 12191000 3 - TSS region transcription start site region 152459
Gm15956 18 12193768 to 12198675 4907 + antisense lncRNA gene predicted gene 15956
Tssr152460 18 12195120 to 12195165 45 - TSS region transcription start site region 152460