Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:10718347-11388385

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9705 18 10725299 to 10727071 1772 CpG island CpG island 9705
Tssr150033 18 10725511 to 10725522 11 + TSS region transcription start site region 150033
Tssr150034 18 10725530 to 10725564 34 + TSS region transcription start site region 150034
Mib1 18 10725553 to 10818578 93025 + protein coding gene mindbomb E3 ubiquitin protein ligase 1
Tssr150035 18 10725577 to 10725607 30 + TSS region transcription start site region 150035
Tssr150036 18 10725614 to 10725636 22 + TSS region transcription start site region 150036
Tssr150037 18 10725651 to 10725665 14 + TSS region transcription start site region 150037
Tssr150038 18 10726245 to 10726271 26 + TSS region transcription start site region 150038
Tssr152435 18 10735286 to 10735292 6 - TSS region transcription start site region 152435
4833420D23Rik 18 10747860 to 10748964 1104 unclassified gene RIKEN cDNA 4833420D23 gene
Tssr150039 18 10747875 to 10747879 4 + TSS region transcription start site region 150039
Gm25116 18 10757536 to 10757657 121 + snoRNA gene predicted gene, 25116
Tssr150040 18 10764564 to 10764568 4 + TSS region transcription start site region 150040
Mir133a-1hg 18 10781723 to 10785883 4160 - antisense lncRNA gene Mir133a-1, Mir1b and Mir1a-2 host gene
Tssr150041 18 10782310 to 10782317 7 + TSS region transcription start site region 150041
Tssr152436 18 10782908 to 10782912 4 - TSS region transcription start site region 152436
Mir133a-1 18 10782909 to 10782976 67 - miRNA gene microRNA 133a-1
Mirc18 18 10785446 to 10785567 121 complex/cluster/region microRNA cluster 18, including Mir1b through Mir1a-2
Mir1b 18 10785446 to 10785567 121 + miRNA gene microRNA 1b
Tssr152437 18 10785478 to 10785482 4 - TSS region transcription start site region 152437
Mir1a-2 18 10785481 to 10785552 71 - miRNA gene microRNA 1a-2
Tssr152438 18 10787684 to 10787699 15 - TSS region transcription start site region 152438
Tssr150042 18 10812606 to 10812621 15 + TSS region transcription start site region 150042
Tssr150043 18 10815725 to 10815729 4 + TSS region transcription start site region 150043
Tssr150044 18 10816074 to 10816083 9 + TSS region transcription start site region 150044
Tssr150045 18 10816669 to 10816673 4 + TSS region transcription start site region 150045
Gm18764 18 10859680 to 10860433 753 + pseudogene predicted gene, 18764
Gm35814 18 10888414 to 10993877 105463 + lncRNA gene predicted gene, 35814
Tssr150046 18 10920922 to 10920942 20 + TSS region transcription start site region 150046
Tssr150047 18 10921041 to 10921061 20 + TSS region transcription start site region 150047
Tssr150048 18 10921068 to 10921089 21 + TSS region transcription start site region 150048
Tssr150049 18 10921953 to 10921958 5 + TSS region transcription start site region 150049
Gm7575 18 10928884 to 10931510 2626 + pseudogene predicted gene 7575
9130001E16Rik 18 11003688 to 11008672 4984 - lncRNA gene RIKEN cDNA 9130001E16 gene
9530025H10Rik 18 11007430 to 11008634 1204 unclassified gene RIKEN cDNA 9530025H10 gene
2210016H18Rik 18 11016764 to 11017871 1107 unclassified gene RIKEN cDNA 2210016H18 gene
2600014K08Rik 18 11019049 to 11019820 771 unclassified gene RIKEN cDNA 2600014K08 gene
Tssr150050 18 11034680 to 11034684 4 + TSS region transcription start site region 150050
1010001N08Rik 18 11042037 to 11052567 10530 - lncRNA gene RIKEN cDNA 1010001N08 gene
Tssr150051 18 11047578 to 11047617 39 + TSS region transcription start site region 150051
Tssr150052 18 11047621 to 11047639 18 + TSS region transcription start site region 150052
Cpgi9706 18 11048096 to 11048741 645 CpG island CpG island 9706
Tssr152439 18 11048650 to 11048662 12 - TSS region transcription start site region 152439
Tssr152440 18 11048667 to 11048685 18 - TSS region transcription start site region 152440
Tssr152441 18 11050688 to 11050702 14 - TSS region transcription start site region 152441
Tssr152442 18 11051329 to 11051369 40 - TSS region transcription start site region 152442
Tssr152443 18 11051373 to 11051387 14 - TSS region transcription start site region 152443
Tssr152444 18 11051409 to 11051437 28 - TSS region transcription start site region 152444
Tssr152445 18 11051438 to 11051453 15 - TSS region transcription start site region 152445
Tssr152446 18 11051479 to 11051502 23 - TSS region transcription start site region 152446
Tssr152447 18 11051545 to 11051556 11 - TSS region transcription start site region 152447
Tssr152448 18 11051925 to 11051942 17 - TSS region transcription start site region 152448
Cpgi9707 18 11052049 to 11055533 3484 CpG island CpG island 9707
Tssr152449 18 11052344 to 11052358 14 - TSS region transcription start site region 152449
Tssr150053 18 11052458 to 11052479 21 + TSS region transcription start site region 150053
Tssr150054 18 11052487 to 11052510 23 + TSS region transcription start site region 150054
Gata6 18 11052510 to 11085636 33126 + protein coding gene GATA binding protein 6
Tssr150055 18 11052518 to 11052527 9 + TSS region transcription start site region 150055
Tssr150056 18 11052608 to 11052635 27 + TSS region transcription start site region 150056
Tssr150057 18 11052644 to 11052661 17 + TSS region transcription start site region 150057
Tssr152450 18 11052859 to 11052892 33 - TSS region transcription start site region 152450
Tssr150058 18 11053242 to 11053292 50 + TSS region transcription start site region 150058
Tssr150059 18 11053308 to 11053319 11 + TSS region transcription start site region 150059
Tssr150060 18 11053324 to 11053342 18 + TSS region transcription start site region 150060
Tssr150061 18 11053347 to 11053385 38 + TSS region transcription start site region 150061
Tssr150062 18 11054062 to 11054074 12 + TSS region transcription start site region 150062
Cpgi9708 18 11058945 to 11059310 365 CpG island CpG island 9708
Tssr150063 18 11059014 to 11059029 15 + TSS region transcription start site region 150063
Tssr150064 18 11059042 to 11059053 11 + TSS region transcription start site region 150064
Tssr150065 18 11084122 to 11084131 9 + TSS region transcription start site region 150065
D18Mit31 18 11196303 to 11196417 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 31
Cpgi9709 18 11239641 to 11240267 626 CpG island CpG island 9709
Cpgi9710 18 11351902 to 11352534 632 CpG island CpG island 9710