Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:10688340-12578357

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abhd3 18 10644411 to 10706784 62373 - protein coding gene abhydrolase domain containing 3
Cpgi9704 18 10706105 to 10706585 480 CpG island CpG island 9704
Tssr152434 18 10706688 to 10706694 6 - TSS region transcription start site region 152434
Tssr5245 18 10706701 to 10706768 67 - TSS region transcription start site region 5245
4930563E18Rik 18 10706860 to 10711832 4972 + lincRNA gene RIKEN cDNA 4930563E18 gene
Tssr150032 18 10715048 to 10715050 2 + TSS region transcription start site region 150032
Cpgi9705 18 10725299 to 10727071 1772 CpG island CpG island 9705
Tssr150033 18 10725511 to 10725522 11 + TSS region transcription start site region 150033
Tssr150034 18 10725530 to 10725564 34 + TSS region transcription start site region 150034
Mib1 18 10725553 to 10818578 93025 + protein coding gene mindbomb E3 ubiquitin protein ligase 1
Tssr150035 18 10725577 to 10725607 30 + TSS region transcription start site region 150035
Tssr150036 18 10725614 to 10725636 22 + TSS region transcription start site region 150036
Tssr150037 18 10725651 to 10725665 14 + TSS region transcription start site region 150037
Tssr150038 18 10726245 to 10726271 26 + TSS region transcription start site region 150038
Tssr152435 18 10735286 to 10735292 6 - TSS region transcription start site region 152435
4833420D23Rik 18 10747860 to 10748964 1104 unclassified gene RIKEN cDNA 4833420D23 gene
Tssr150039 18 10747875 to 10747879 4 + TSS region transcription start site region 150039
Gm25116 18 10757536 to 10757657 121 + snoRNA gene predicted gene, 25116
Tssr150040 18 10764564 to 10764568 4 + TSS region transcription start site region 150040
Mir133a-1hg 18 10781723 to 10785883 4160 - antisense lncRNA gene Mir133a-1, Mir1b and Mir1a-2 host gene
Tssr150041 18 10782310 to 10782317 7 + TSS region transcription start site region 150041
Tssr152436 18 10782908 to 10782912 4 - TSS region transcription start site region 152436
Mir133a-1 18 10782909 to 10782976 67 - miRNA gene microRNA 133a-1
Mir1b 18 10785446 to 10785567 121 + miRNA gene microRNA 1b
Mirc18 18 10785446 to 10785567 121 complex/cluster/region microRNA cluster 18, including Mir1b through Mir1a-2
Tssr152437 18 10785478 to 10785482 4 - TSS region transcription start site region 152437
Mir1a-2 18 10785481 to 10785552 71 - miRNA gene microRNA 1a-2
Tssr152438 18 10787684 to 10787699 15 - TSS region transcription start site region 152438
Tssr150042 18 10812606 to 10812621 15 + TSS region transcription start site region 150042
Tssr150043 18 10815725 to 10815729 4 + TSS region transcription start site region 150043
Tssr150044 18 10816074 to 10816083 9 + TSS region transcription start site region 150044
Tssr150045 18 10816669 to 10816673 4 + TSS region transcription start site region 150045
Gm18764 18 10859680 to 10860433 753 + pseudogene predicted gene, 18764
Gm35814 18 10888414 to 10993877 105463 + lncRNA gene predicted gene, 35814
Tssr150046 18 10920922 to 10920942 20 + TSS region transcription start site region 150046
Tssr150047 18 10921041 to 10921061 20 + TSS region transcription start site region 150047
Tssr150048 18 10921068 to 10921089 21 + TSS region transcription start site region 150048
Tssr150049 18 10921953 to 10921958 5 + TSS region transcription start site region 150049
Gm7575 18 10928884 to 10931510 2626 + pseudogene predicted gene 7575
9130001E16Rik 18 11003688 to 11008672 4984 - lncRNA gene RIKEN cDNA 9130001E16 gene
9530025H10Rik 18 11007430 to 11008634 1204 unclassified gene RIKEN cDNA 9530025H10 gene
2210016H18Rik 18 11016764 to 11017871 1107 unclassified gene RIKEN cDNA 2210016H18 gene
2600014K08Rik 18 11019049 to 11019820 771 unclassified gene RIKEN cDNA 2600014K08 gene
Tssr150050 18 11034680 to 11034684 4 + TSS region transcription start site region 150050
1010001N08Rik 18 11042037 to 11052567 10530 - lncRNA gene RIKEN cDNA 1010001N08 gene
Tssr150051 18 11047578 to 11047617 39 + TSS region transcription start site region 150051
Tssr150052 18 11047621 to 11047639 18 + TSS region transcription start site region 150052
Cpgi9706 18 11048096 to 11048741 645 CpG island CpG island 9706
Tssr152439 18 11048650 to 11048662 12 - TSS region transcription start site region 152439
Tssr152440 18 11048667 to 11048685 18 - TSS region transcription start site region 152440
Tssr152441 18 11050688 to 11050702 14 - TSS region transcription start site region 152441
Tssr152442 18 11051329 to 11051369 40 - TSS region transcription start site region 152442
Tssr152443 18 11051373 to 11051387 14 - TSS region transcription start site region 152443
Tssr152444 18 11051409 to 11051437 28 - TSS region transcription start site region 152444
Tssr152445 18 11051438 to 11051453 15 - TSS region transcription start site region 152445
Tssr152446 18 11051479 to 11051502 23 - TSS region transcription start site region 152446
Tssr152447 18 11051545 to 11051556 11 - TSS region transcription start site region 152447
Tssr152448 18 11051925 to 11051942 17 - TSS region transcription start site region 152448
Cpgi9707 18 11052049 to 11055533 3484 CpG island CpG island 9707
Tssr152449 18 11052344 to 11052358 14 - TSS region transcription start site region 152449
Tssr150053 18 11052458 to 11052479 21 + TSS region transcription start site region 150053
Tssr150054 18 11052487 to 11052510 23 + TSS region transcription start site region 150054
Gata6 18 11052510 to 11085636 33126 + protein coding gene GATA binding protein 6
Tssr150055 18 11052518 to 11052527 9 + TSS region transcription start site region 150055
Tssr150056 18 11052608 to 11052635 27 + TSS region transcription start site region 150056
Tssr150057 18 11052644 to 11052661 17 + TSS region transcription start site region 150057
Tssr152450 18 11052859 to 11052892 33 - TSS region transcription start site region 152450
Tssr150058 18 11053242 to 11053292 50 + TSS region transcription start site region 150058
Tssr150059 18 11053308 to 11053319 11 + TSS region transcription start site region 150059
Tssr150060 18 11053324 to 11053342 18 + TSS region transcription start site region 150060
Tssr150061 18 11053347 to 11053385 38 + TSS region transcription start site region 150061
Tssr150062 18 11054062 to 11054074 12 + TSS region transcription start site region 150062
Cpgi9708 18 11058945 to 11059310 365 CpG island CpG island 9708
Tssr150063 18 11059014 to 11059029 15 + TSS region transcription start site region 150063
Tssr150064 18 11059042 to 11059053 11 + TSS region transcription start site region 150064
Tssr150065 18 11084122 to 11084131 9 + TSS region transcription start site region 150065
D18Mit31 18 11196303 to 11196417 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 31
Cpgi9709 18 11239641 to 11240267 626 CpG island CpG island 9709
Cpgi9710 18 11351902 to 11352534 632 CpG island CpG island 9710
Gm35918 18 11399652 to 11401895 2243 - lncRNA gene predicted gene, 35918
Gm50067 18 11624915 to 11625507 592 + pseudogene predicted gene, 50067
Rbbp8 18 11633276 to 11743207 109931 + protein coding gene retinoblastoma binding protein 8, endonuclease
Tssr150066 18 11633340 to 11633357 17 + TSS region transcription start site region 150066
Tssr150067 18 11633363 to 11633381 18 + TSS region transcription start site region 150067
Gm50069 18 11655420 to 11657784 2364 - antisense lncRNA gene predicted gene, 50069
Cpgi9711 18 11656997 to 11658348 1351 CpG island CpG island 9711
Tssr150068 18 11657352 to 11657486 134 + TSS region transcription start site region 150068
Tssr150069 18 11657489 to 11657502 13 + TSS region transcription start site region 150069
Tssr150070 18 11657521 to 11657553 32 + TSS region transcription start site region 150070
Tssr152451 18 11657745 to 11657756 11 - TSS region transcription start site region 152451
Tssr150071 18 11657831 to 11657876 45 + TSS region transcription start site region 150071
Tssr150072 18 11722648 to 11722667 19 + TSS region transcription start site region 150072
Gm18713 18 11752279 to 11752555 276 - pseudogene predicted gene, 18713
Mom21 18 11760619 to 11760766 147 QTL modifier of Min 21
D18Mit110 18 11760619 to 11760766 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 110
D18Ua1 18 11783287 to 11783465 178 DNA segment DNA segment, Chr 18, University of Arizona 1
Tssr150073 18 11787192 to 11787196 4 + TSS region transcription start site region 150073
Gm41665 18 11815710 to 11819149 3439 + lncRNA gene predicted gene, 41665
Gm6277 18 11821088 to 11839377 18289 - antisense lncRNA gene predicted gene 6277
Cpgi9712 18 11839025 to 11840943 1918 CpG island CpG island 9712
Cables1 18 11839274 to 11945627 106353 + protein coding gene CDK5 and Abl enzyme substrate 1
Tssr150074 18 11839416 to 11839475 59 + TSS region transcription start site region 150074
Tssr150075 18 11839495 to 11839519 24 + TSS region transcription start site region 150075
Tssr150076 18 11839536 to 11839551 15 + TSS region transcription start site region 150076
Mir1901 18 11840361 to 11840438 77 - miRNA gene microRNA 1901
Tssr152452 18 11858039 to 11858040 1 - TSS region transcription start site region 152452
D18Ertd289e 18 11875788 to 11875991 203 DNA segment DNA segment, Chr 18, ERATO Doi 289, expressed
Gm49968 18 11913131 to 11915903 2772 + unclassified gene predicted gene, 49968
Tssr150077 18 11918059 to 11918063 4 + TSS region transcription start site region 150077
Tssr150078 18 11924955 to 11924959 4 + TSS region transcription start site region 150078
6330412A17Rik 18 11929774 to 11932375 2601 unclassified gene RIKEN cDNA 6330412A17 gene
Tssr150079 18 11947251 to 11947280 29 + TSS region transcription start site region 150079
Gm41666 18 11949342 to 11950435 1093 + lncRNA gene predicted gene, 41666
Tssr152453 18 11967138 to 11967156 18 - TSS region transcription start site region 152453
Tmem241 18 11980136 to 12121556 141420 - protein coding gene transmembrane protein 241
D18Mit67 18 12007997 to 12008120 123 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 67
Tssr152454 18 12061421 to 12061432 11 - TSS region transcription start site region 152454
F830003O12Rik 18 12087999 to 12090264 2265 unclassified non-coding RNA gene RIKEN cDNA F830003O12 gene
Cpgi9713 18 12121165 to 12121711 546 CpG island CpG island 9713
Tssr152455 18 12121460 to 12121492 32 - TSS region transcription start site region 152455
Tssr152456 18 12121506 to 12121541 35 - TSS region transcription start site region 152456
Gm41667 18 12121591 to 12122470 879 + lncRNA gene predicted gene, 41667
Cpgi9714 18 12128413 to 12129300 887 CpG island CpG island 9714
Tssr150080 18 12128594 to 12128606 12 + TSS region transcription start site region 150080
Tssr152457 18 12128626 to 12128644 18 - TSS region transcription start site region 152457
Riok3 18 12128741 to 12157387 28646 + protein coding gene RIO kinase 3
Tssr150081 18 12128742 to 12128807 65 + TSS region transcription start site region 150081
Tssr150082 18 12128819 to 12128828 9 + TSS region transcription start site region 150082
Tssr150083 18 12128852 to 12128868 16 + TSS region transcription start site region 150083
Tssr150084 18 12135845 to 12135867 22 + TSS region transcription start site region 150084
D18Mit229 18 12145757 to 12145876 119 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 229
Tssr150085 18 12147265 to 12147268 3 + TSS region transcription start site region 150085
Tssr150086 18 12158857 to 12158867 10 + TSS region transcription start site region 150086
Tssr150087 18 12163435 to 12163439 4 + TSS region transcription start site region 150087
Gm25289 18 12163438 to 12163556 118 + snRNA gene predicted gene, 25289
Cpgi9715 18 12168326 to 12169166 840 CpG island CpG island 9715
Tssr150088 18 12168711 to 12168791 80 + TSS region transcription start site region 150088
Rmc1 18 12168717 to 12190658 21941 + protein coding gene regulator of MON1-CCZ1
Gm19293 18 12173159 to 12174927 1768 + pseudogene predicted gene, 19293
Tssr150089 18 12173553 to 12173567 14 + TSS region transcription start site region 150089
Tssr5246 18 12183864 to 12183874 10 + TSS region transcription start site region 5246
Npc1 18 12189692 to 12236400 46708 - protein coding gene NPC intracellular cholesterol transporter 1
Tssr152458 18 12190379 to 12190398 19 - TSS region transcription start site region 152458
Tssr152459 18 12190997 to 12191000 3 - TSS region transcription start site region 152459
Gm15956 18 12193768 to 12198675 4907 + antisense lncRNA gene predicted gene 15956
Tssr152460 18 12195120 to 12195165 45 - TSS region transcription start site region 152460
Tssr152461 18 12213369 to 12213393 24 - TSS region transcription start site region 152461
Tssr152462 18 12220098 to 12220139 41 - TSS region transcription start site region 152462
D18Mit38 18 12230645 to 12230770 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 38
Tssr152463 18 12232719 to 12232731 12 - TSS region transcription start site region 152463
Cpgi9716 18 12235916 to 12236758 842 CpG island CpG island 9716
Tssr152464 18 12236301 to 12236405 104 - TSS region transcription start site region 152464
Ankrd29 18 12252362 to 12305797 53435 - protein coding gene ankyrin repeat domain 29
Tssr150090 18 12256182 to 12256206 24 + TSS region transcription start site region 150090
Tssr150091 18 12256220 to 12256242 22 + TSS region transcription start site region 150091
Tssr150092 18 12256289 to 12256296 7 + TSS region transcription start site region 150092
Cpgi9717 18 12268309 to 12268606 297 CpG island CpG island 9717
Gm16072 18 12287404 to 12289780 2376 + pseudogene predicted gene 16072
Cpgi9718 18 12305353 to 12306082 729 CpG island CpG island 9718
Cpgi9719 18 12333768 to 12334312 544 CpG island CpG island 9719
Lama3 18 12333819 to 12583013 249194 + protein coding gene laminin, alpha 3
Tssr150093 18 12333928 to 12333946 18 + TSS region transcription start site region 150093
Tssr150094 18 12333948 to 12333951 3 + TSS region transcription start site region 150094
Tssr150095 18 12333953 to 12334003 50 + TSS region transcription start site region 150095
Gm29201 18 12365799 to 12366229 430 + pseudogene predicted gene 29201
D18Mit146 18 12405341 to 12405483 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 146
Gm36232 18 12409559 to 12425262 15703 - lncRNA gene predicted gene, 36232
Tssr150096 18 12410857 to 12410874 17 + TSS region transcription start site region 150096
Tssr152465 18 12425254 to 12425275 21 - TSS region transcription start site region 152465
Tssr5247 18 12490782 to 12490790 8 + TSS region transcription start site region 5247
Tssr150097 18 12490813 to 12490820 7 + TSS region transcription start site region 150097
Gm29199 18 12498688 to 12499462 774 - pseudogene predicted gene 29199
Gm29200 18 12501190 to 12504426 3236 - antisense lncRNA gene predicted gene 29200
Tssr150098 18 12504116 to 12504125 9 + TSS region transcription start site region 150098
Tssr150099 18 12504143 to 12504156 13 + TSS region transcription start site region 150099
Tssr150100 18 12504161 to 12504168 7 + TSS region transcription start site region 150100
Tssr150101 18 12504178 to 12504207 29 + TSS region transcription start site region 150101
Tssr150102 18 12523992 to 12524020 28 + TSS region transcription start site region 150102
Tssr150103 18 12569260 to 12569272 12 + TSS region transcription start site region 150103