Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:10590446-10980567

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Esco1 18 10566507 to 10610352 43845 - protein coding gene establishment of sister chromatid cohesion N-acetyltransferase 1
Tssr152428 18 10594935 to 10594947 12 - TSS region transcription start site region 152428
Cpgi9702 18 10609432 to 10610648 1216 CpG island CpG island 9702
Tssr152429 18 10610048 to 10610116 68 - TSS region transcription start site region 152429
Tssr152430 18 10610124 to 10610144 20 - TSS region transcription start site region 152430
Tssr152431 18 10610269 to 10610288 19 - TSS region transcription start site region 152431
Tssr152432 18 10610301 to 10610312 11 - TSS region transcription start site region 152432
Tssr152433 18 10610346 to 10610363 17 - TSS region transcription start site region 152433
Cpgi9703 18 10617579 to 10618291 712 CpG island CpG island 9703
Tssr150028 18 10617768 to 10617845 77 + TSS region transcription start site region 150028
Snrpd1 18 10617796 to 10628230 10434 + protein coding gene small nuclear ribonucleoprotein D1
Tssr150029 18 10617846 to 10617855 9 + TSS region transcription start site region 150029
Tssr150030 18 10617858 to 10617873 15 + TSS region transcription start site region 150030
Tssr150031 18 10618040 to 10618051 11 + TSS region transcription start site region 150031
Abhd3 18 10644411 to 10706784 62373 - protein coding gene abhydrolase domain containing 3
Cpgi9704 18 10706105 to 10706585 480 CpG island CpG island 9704
Tssr152434 18 10706688 to 10706694 6 - TSS region transcription start site region 152434
Tssr5245 18 10706701 to 10706768 67 - TSS region transcription start site region 5245
4930563E18Rik 18 10706860 to 10711832 4972 + lincRNA gene RIKEN cDNA 4930563E18 gene
Tssr150032 18 10715048 to 10715050 2 + TSS region transcription start site region 150032
Cpgi9705 18 10725299 to 10727071 1772 CpG island CpG island 9705
Tssr150033 18 10725511 to 10725522 11 + TSS region transcription start site region 150033
Tssr150034 18 10725530 to 10725564 34 + TSS region transcription start site region 150034
Mib1 18 10725553 to 10818578 93025 + protein coding gene mindbomb E3 ubiquitin protein ligase 1
Tssr150035 18 10725577 to 10725607 30 + TSS region transcription start site region 150035
Tssr150036 18 10725614 to 10725636 22 + TSS region transcription start site region 150036
Tssr150037 18 10725651 to 10725665 14 + TSS region transcription start site region 150037
Tssr150038 18 10726245 to 10726271 26 + TSS region transcription start site region 150038
Tssr152435 18 10735286 to 10735292 6 - TSS region transcription start site region 152435
4833420D23Rik 18 10747860 to 10748964 1104 unclassified gene RIKEN cDNA 4833420D23 gene
Tssr150039 18 10747875 to 10747879 4 + TSS region transcription start site region 150039
Gm25116 18 10757536 to 10757657 121 + snoRNA gene predicted gene, 25116
Tssr150040 18 10764564 to 10764568 4 + TSS region transcription start site region 150040
Mir133a-1hg 18 10781723 to 10785883 4160 - antisense lncRNA gene Mir133a-1, Mir1b and Mir1a-2 host gene
Tssr150041 18 10782310 to 10782317 7 + TSS region transcription start site region 150041
Tssr152436 18 10782908 to 10782912 4 - TSS region transcription start site region 152436
Mir133a-1 18 10782909 to 10782976 67 - miRNA gene microRNA 133a-1
Mirc18 18 10785446 to 10785567 121 complex/cluster/region microRNA cluster 18, including Mir1b through Mir1a-2
Mir1b 18 10785446 to 10785567 121 + miRNA gene microRNA 1b
Tssr152437 18 10785478 to 10785482 4 - TSS region transcription start site region 152437
Mir1a-2 18 10785481 to 10785552 71 - miRNA gene microRNA 1a-2
Tssr152438 18 10787684 to 10787699 15 - TSS region transcription start site region 152438
Tssr150042 18 10812606 to 10812621 15 + TSS region transcription start site region 150042
Tssr150043 18 10815725 to 10815729 4 + TSS region transcription start site region 150043
Tssr150044 18 10816074 to 10816083 9 + TSS region transcription start site region 150044
Tssr150045 18 10816669 to 10816673 4 + TSS region transcription start site region 150045
Gm18764 18 10859680 to 10860433 753 + pseudogene predicted gene, 18764
Gm35814 18 10888414 to 10993877 105463 + lncRNA gene predicted gene, 35814
Tssr150046 18 10920922 to 10920942 20 + TSS region transcription start site region 150046
Tssr150047 18 10921041 to 10921061 20 + TSS region transcription start site region 150047
Tssr150048 18 10921068 to 10921089 21 + TSS region transcription start site region 150048
Tssr150049 18 10921953 to 10921958 5 + TSS region transcription start site region 150049
Gm7575 18 10928884 to 10931510 2626 + pseudogene predicted gene 7575