Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:10178087-10788465

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rock1 18 10064401 to 10181792 117391 - protein coding gene Rho-associated coiled-coil containing protein kinase 1
Cpgi9699 18 10181229 to 10182578 1349 CpG island CpG island 9699
Tssr150021 18 10181303 to 10181314 11 + TSS region transcription start site region 150021
Tssr152419 18 10181326 to 10181356 30 - TSS region transcription start site region 152419
Tssr150022 18 10181399 to 10181409 10 + TSS region transcription start site region 150022
Tssr152420 18 10182010 to 10182032 22 - TSS region transcription start site region 152420
Tssr152421 18 10182034 to 10182053 19 - TSS region transcription start site region 152421
Tssr152422 18 10182068 to 10182092 24 - TSS region transcription start site region 152422
Tssr152423 18 10182095 to 10182107 12 - TSS region transcription start site region 152423
Tssr152424 18 10182128 to 10182151 23 - TSS region transcription start site region 152424
Tssr152425 18 10182162 to 10182179 17 - TSS region transcription start site region 152425
Tssr152426 18 10182183 to 10182223 40 - TSS region transcription start site region 152426
Gm50032 18 10194441 to 10194781 340 - pseudogene predicted gene, 50032
Gm7156 18 10197676 to 10198174 498 - pseudogene predicted gene 7156
Gm19052 18 10236685 to 10237821 1136 + pseudogene predicted gene, 19052
Gm5686 18 10262207 to 10263285 1078 + pseudogene predicted gene 5686
Gm50033 18 10307103 to 10307820 717 - unclassified gene predicted gene, 50033
Cpgi9700 18 10324824 to 10325968 1144 CpG island CpG island 9700
Tssr150023 18 10324917 to 10324950 33 + TSS region transcription start site region 150023
Tssr150024 18 10325148 to 10325222 74 + TSS region transcription start site region 150024
Greb1l 18 10325177 to 10562940 237763 + protein coding gene growth regulation by estrogen in breast cancer-like
Tssr150025 18 10326124 to 10326130 6 + TSS region transcription start site region 150025
C430014O12Rik 18 10327895 to 10328801 906 unclassified gene RIKEN cDNA C430014O12 gene
Tssr150026 18 10346149 to 10346152 3 + TSS region transcription start site region 150026
Gm44409 18 10365908 to 10366073 165 - miRNA gene predicted gene, 44409
Tssr150027 18 10447815 to 10447850 35 + TSS region transcription start site region 150027
Nutf2-ps2 18 10483087 to 10483465 378 - pseudogene nuclear transport factor 2, pseudogene 2
Cpgi9701 18 10532749 to 10533033 284 CpG island CpG island 9701
Gm24894 18 10551289 to 10551406 117 - snoRNA gene predicted gene, 24894
Esco1 18 10566507 to 10610352 43845 - protein coding gene establishment of sister chromatid cohesion N-acetyltransferase 1
Tssr152427 18 10588674 to 10588678 4 - TSS region transcription start site region 152427
Tssr152428 18 10594935 to 10594947 12 - TSS region transcription start site region 152428
Cpgi9702 18 10609432 to 10610648 1216 CpG island CpG island 9702
Tssr152429 18 10610048 to 10610116 68 - TSS region transcription start site region 152429
Tssr152430 18 10610124 to 10610144 20 - TSS region transcription start site region 152430
Tssr152431 18 10610269 to 10610288 19 - TSS region transcription start site region 152431
Tssr152432 18 10610301 to 10610312 11 - TSS region transcription start site region 152432
Tssr152433 18 10610346 to 10610363 17 - TSS region transcription start site region 152433
Cpgi9703 18 10617579 to 10618291 712 CpG island CpG island 9703
Tssr150028 18 10617768 to 10617845 77 + TSS region transcription start site region 150028
Snrpd1 18 10617796 to 10628230 10434 + protein coding gene small nuclear ribonucleoprotein D1
Tssr150029 18 10617846 to 10617855 9 + TSS region transcription start site region 150029
Tssr150030 18 10617858 to 10617873 15 + TSS region transcription start site region 150030
Tssr150031 18 10618040 to 10618051 11 + TSS region transcription start site region 150031
Abhd3 18 10644411 to 10706784 62373 - protein coding gene abhydrolase domain containing 3
Cpgi9704 18 10706105 to 10706585 480 CpG island CpG island 9704
Tssr152434 18 10706688 to 10706694 6 - TSS region transcription start site region 152434
Tssr5245 18 10706701 to 10706768 67 - TSS region transcription start site region 5245
4930563E18Rik 18 10706860 to 10711832 4972 + lincRNA gene RIKEN cDNA 4930563E18 gene
Tssr150032 18 10715048 to 10715050 2 + TSS region transcription start site region 150032
Cpgi9705 18 10725299 to 10727071 1772 CpG island CpG island 9705
Tssr150033 18 10725511 to 10725522 11 + TSS region transcription start site region 150033
Tssr150034 18 10725530 to 10725564 34 + TSS region transcription start site region 150034
Mib1 18 10725553 to 10818578 93025 + protein coding gene mindbomb E3 ubiquitin protein ligase 1
Tssr150035 18 10725577 to 10725607 30 + TSS region transcription start site region 150035
Tssr150036 18 10725614 to 10725636 22 + TSS region transcription start site region 150036
Tssr150037 18 10725651 to 10725665 14 + TSS region transcription start site region 150037
Tssr150038 18 10726245 to 10726271 26 + TSS region transcription start site region 150038
Tssr152435 18 10735286 to 10735292 6 - TSS region transcription start site region 152435
4833420D23Rik 18 10747860 to 10748964 1104 unclassified gene RIKEN cDNA 4833420D23 gene
Tssr150039 18 10747875 to 10747879 4 + TSS region transcription start site region 150039
Gm25116 18 10757536 to 10757657 121 + snoRNA gene predicted gene, 25116
Tssr150040 18 10764564 to 10764568 4 + TSS region transcription start site region 150040
Mir133a-1hg 18 10781723 to 10785883 4160 - antisense lncRNA gene Mir133a-1, Mir1b and Mir1a-2 host gene
Tssr150041 18 10782310 to 10782317 7 + TSS region transcription start site region 150041
Tssr152436 18 10782908 to 10782912 4 - TSS region transcription start site region 152436
Mir133a-1 18 10782909 to 10782976 67 - miRNA gene microRNA 133a-1
Mirc18 18 10785446 to 10785567 121 complex/cluster/region microRNA cluster 18, including Mir1b through Mir1a-2
Mir1b 18 10785446 to 10785567 121 + miRNA gene microRNA 1b
Tssr152437 18 10785478 to 10785482 4 - TSS region transcription start site region 152437
Mir1a-2 18 10785481 to 10785552 71 - miRNA gene microRNA 1a-2
Tssr152438 18 10787684 to 10787699 15 - TSS region transcription start site region 152438