Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:9113869-16210829

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676 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
6530411M01Rik 17 9147719 to 9167836 20117 - lincRNA gene RIKEN cDNA 6530411M01 gene
Cpgi8602 17 9167292 to 9167713 421 CpG island CpG island 8602
Cpgi8603 17 9168304 to 9168479 175 CpG island CpG island 8603
C87487 17 9189126 to 9223664 34538 + lincRNA gene expressed sequence C87487
Gm49806 17 9246550 to 9248548 1998 + unclassified gene predicted gene, 49806
Gm8492 17 9320395 to 9321381 986 - pseudogene predicted gene 8492
Gm7947 17 9321902 to 9323795 1893 - pseudogene predicted gene 7947
D17Jcs100 17 9399259 to 9399462 203 DNA segment DNA segment, Chr 17, John C. Schimenti 100
Gm17748 17 9421943 to 9422464 521 - pseudogene predicted gene, 17748
Gm17728 17 9422060 to 9422458 398 + protein coding gene predicted gene, 17728
Gm49807 17 9549691 to 9594242 44551 + lincRNA gene predicted gene, 49807
Pabpc6 17 9666497 to 9669704 3207 - protein coding gene poly(A) binding protein, cytoplasmic 6
Cpgi8604 17 9669242 to 9669741 499 CpG island CpG island 8604
Tssr146366 17 9669649 to 9669663 14 - TSS region transcription start site region 146366
Tssr146367 17 9669668 to 9669705 37 - TSS region transcription start site region 146367
Tssr146368 17 9669712 to 9669721 9 - TSS region transcription start site region 146368
Tssr5003 17 9669725 to 9669729 4 - TSS region transcription start site region 5003
D17Mit97 17 9688678 to 9688822 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 97
Gm34684 17 9705342 to 9726361 21019 - lincRNA gene predicted gene, 34684
D17Jcs102 17 9724382 to 9724581 199 DNA segment DNA segment, Chr 17, John C. Schimenti 102
4930452A19Rik 17 9750752 to 9775866 25114 - lncRNA gene RIKEN cDNA 4930452A19 gene
Tssr146369 17 9775855 to 9775858 3 - TSS region transcription start site region 146369
Tssr146370 17 9775862 to 9775872 10 - TSS region transcription start site region 146370
Gm34883 17 9847465 to 9849188 1723 - unclassified non-coding RNA gene predicted gene, 34883
Pcyts4 17 9862411 to 9862710 299 QTL plasmacytoma susceptibility 4
D17Mit57 17 9862411 to 9862710 299 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 57
Cfld3 17 9862411 to 9862710 299 QTL cystic fibrosis lung disease 3
Gm49808 17 9864419 to 9882149 17730 + lincRNA gene predicted gene, 49808
Tssr142566 17 9864601 to 9864628 27 + TSS region transcription start site region 142566
Gm34799 17 9926593 to 9929767 3174 - lincRNA gene predicted gene, 34799
Gm49809 17 9947837 to 9948297 460 + pseudogene predicted gene, 49809
D17Mit273 17 9949677 to 9949823 146 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-273
Tssr142567 17 10001604 to 10001609 5 + TSS region transcription start site region 142567
Tssr142568 17 10079248 to 10079258 10 + TSS region transcription start site region 142568
Tssr146371 17 10079828 to 10079838 10 - TSS region transcription start site region 146371
Gm34972 17 10141940 to 10146252 4312 - lncRNA gene predicted gene, 34972
D17Jcs112 17 10151818 to 10152034 216 DNA segment DNA segment, Chr 17, John C. Schimenti 112
D17Jcs111 17 10193913 to 10194148 235 DNA segment DNA segment, Chr 17, John C. Schimenti 111
Qk 17 10206471 to 10319361 112890 - protein coding gene quaking
Tssr146372 17 10209422 to 10209433 11 - TSS region transcription start site region 146372
Tssr146373 17 10211719 to 10211739 20 - TSS region transcription start site region 146373
Tssr146374 17 10212020 to 10212055 35 - TSS region transcription start site region 146374
Tssr146375 17 10212059 to 10212083 24 - TSS region transcription start site region 146375
Tssr146376 17 10212158 to 10212170 12 - TSS region transcription start site region 146376
Tssr146377 17 10212421 to 10212447 26 - TSS region transcription start site region 146377
Tssr146378 17 10213158 to 10213176 18 - TSS region transcription start site region 146378
Tssr146379 17 10215212 to 10215245 33 - TSS region transcription start site region 146379
Tssr146380 17 10216238 to 10216263 25 - TSS region transcription start site region 146380
Tssr146381 17 10216271 to 10216307 36 - TSS region transcription start site region 146381
Tssr146382 17 10216385 to 10216412 27 - TSS region transcription start site region 146382
Tssr146383 17 10216775 to 10216779 4 - TSS region transcription start site region 146383
Tssr146384 17 10231118 to 10231122 4 - TSS region transcription start site region 146384
D17Jcs113 17 10240945 to 10241245 300 DNA segment DNA segment, Chr 17, John C. Schimenti 113
Tssr146385 17 10244919 to 10244920 1 - TSS region transcription start site region 146385
Tssr146386 17 10265493 to 10265502 9 - TSS region transcription start site region 146386
Tssr146387 17 10274021 to 10274053 32 - TSS region transcription start site region 146387
D17Jcs114 17 10275603 to 10275866 263 DNA segment DNA segment, Chr 17, John C. Schimenti 114
Tssr146388 17 10280610 to 10280614 4 - TSS region transcription start site region 146388
Tssr146389 17 10282887 to 10282903 16 - TSS region transcription start site region 146389
Tssr146390 17 10286690 to 10286697 7 - TSS region transcription start site region 146390
Tssr146391 17 10294528 to 10294531 3 - TSS region transcription start site region 146391
D17Mit58 17 10296552 to 10296770 218 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 58
Tssr142569 17 10304474 to 10304476 2 + TSS region transcription start site region 142569
Dep1 17 10313184 to 10317847 4663 unclassified non-coding RNA gene diabetic embryopathy 1
Cpgi8605 17 10317969 to 10320466 2497 CpG island CpG island 8605
Tssr142570 17 10318320 to 10318337 17 + TSS region transcription start site region 142570
Tssr146392 17 10319235 to 10319251 16 - TSS region transcription start site region 146392
Tssr146393 17 10319260 to 10319282 22 - TSS region transcription start site region 146393
Tssr146394 17 10319283 to 10319294 11 - TSS region transcription start site region 146394
Tssr146395 17 10319296 to 10319317 21 - TSS region transcription start site region 146395
Tssr146396 17 10319324 to 10319380 56 - TSS region transcription start site region 146396
Tssr146397 17 10319381 to 10319392 11 - TSS region transcription start site region 146397
Gm46608 17 10319476 to 10321262 1786 - protein coding gene predicted gene, 46608
Tssr146398 17 10319596 to 10319614 18 - TSS region transcription start site region 146398
Tssr146399 17 10319748 to 10319799 51 - TSS region transcription start site region 146399
Tssr142571 17 10319894 to 10319932 38 + TSS region transcription start site region 142571
Cahm 17 10319919 to 10321141 1222 + lncRNA gene colon adenocarcinoma hypermethylated RNA
Tssr146400 17 10320326 to 10320346 20 - TSS region transcription start site region 146400
Tssr142572 17 10324594 to 10324611 17 + TSS region transcription start site region 142572
1700110C19Rik 17 10324602 to 10329307 4705 + lincRNA gene RIKEN cDNA 1700110C19 gene
Tssr142573 17 10324614 to 10324623 9 + TSS region transcription start site region 142573
Cpgi8606 17 10335069 to 10335703 634 CpG island CpG island 8606
Gm39565 17 10371564 to 10374779 3215 + lncRNA gene predicted gene, 39565
Cpgi8607 17 10371979 to 10372150 171 CpG island CpG island 8607
Cpgi8608 17 10389445 to 10389862 417 CpG island CpG island 8608
Pacrg 17 10403009 to 10840191 437182 - protein coding gene PARK2 co-regulated
D17Jcs115 17 10413849 to 10414049 200 DNA segment DNA segment, Chr 17, John C. Schimenti 115
A230009B12Rik 17 10456216 to 10493057 36841 + antisense lncRNA gene RIKEN cDNA A230009B12 gene
Tssr142574 17 10456293 to 10456298 5 + TSS region transcription start site region 142574
Tssr142575 17 10496331 to 10496342 11 + TSS region transcription start site region 142575
Tssr142576 17 10496371 to 10496396 25 + TSS region transcription start site region 142576
Tssr142577 17 10496414 to 10496428 14 + TSS region transcription start site region 142577
Tssr142578 17 10496434 to 10496441 7 + TSS region transcription start site region 142578
Gm16168 17 10496446 to 10569396 72950 + antisense lncRNA gene predicted gene 16168
D17Wtc1 17 10611363 to 10611577 214 DNA segment DNA segment, Chr 17, Wellcome Trust Centre
Tssr146401 17 10631123 to 10631164 41 - TSS region transcription start site region 146401
Tssr142579 17 10703202 to 10703207 5 + TSS region transcription start site region 142579
D17Jcs116 17 10712328 to 10712631 303 DNA segment DNA segment, Chr 17, John C. Schimenti 116
Tssr146402 17 10721537 to 10721550 13 - TSS region transcription start site region 146402
Tssr146403 17 10721555 to 10721558 3 - TSS region transcription start site region 146403
Gm16169 17 10807716 to 10818826 11110 + lncRNA gene predicted gene 16169
Tssr142580 17 10807827 to 10807841 14 + TSS region transcription start site region 142580
Cpgi8609 17 10839810 to 10841128 1318 CpG island CpG island 8609
Tssr146404 17 10839991 to 10840000 9 - TSS region transcription start site region 146404
Tssr146405 17 10840106 to 10840120 14 - TSS region transcription start site region 146405
Tssr146406 17 10840125 to 10840197 72 - TSS region transcription start site region 146406
Tssr146407 17 10840251 to 10840263 12 - TSS region transcription start site region 146407
Tssr146408 17 10840273 to 10840284 11 - TSS region transcription start site region 146408
Tssr146409 17 10840285 to 10840299 14 - TSS region transcription start site region 146409
Tssr146410 17 10840315 to 10840323 8 - TSS region transcription start site region 146410
Tssr142581 17 10840361 to 10840405 44 + TSS region transcription start site region 142581
Prkn 17 10840384 to 12063361 1222977 + protein coding gene parkin RBR E3 ubiquitin protein ligase
Tssr142582 17 10840422 to 10840437 15 + TSS region transcription start site region 142582
Tssr146411 17 10840565 to 10840585 20 - TSS region transcription start site region 146411
D17Jcs117 17 10855525 to 10855843 318 DNA segment DNA segment, Chr 17, John C. Schimenti 117
Tssr142583 17 10865099 to 10865103 4 + TSS region transcription start site region 142583
Gm3145 17 10898995 to 10899214 219 + pseudogene predicted gene 3145
D17Mit156 17 10987597 to 10987721 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 156
Lfnq4 17 10987597 to 39053168 28065571 QTL lung function QTL 4
D17Jcs75 17 10995515 to 10995719 204 DNA segment DNA segment, Chr 17, John C. Schimenti 75
Flal1 17 11000000 to 8000000 -3000000 QTL fatty liver accumulation QTL 1, females only
Gm28505 17 11082250 to 11089468 7218 - antisense lncRNA gene predicted gene 28505
Gm41526 17 11118480 to 11134237 15757 - lncRNA gene predicted gene, 41526
Gm37402 17 11249344 to 11254343 4999 + unclassified gene predicted gene, 37402
Gm37332 17 11283922 to 11286765 2843 - unclassified gene predicted gene, 37332
Tssr142584 17 11329294 to 11329336 42 + TSS region transcription start site region 142584
Tssr142585 17 11329607 to 11329623 16 + TSS region transcription start site region 142585
D17Dcr31 17 11352350 to 11352449 99 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 31
Tssr146412 17 11385373 to 11385382 9 - TSS region transcription start site region 146412
Tssr146413 17 11385402 to 11385409 7 - TSS region transcription start site region 146413
D17Jcs72 17 11519923 to 11520095 172 DNA segment DNA segment, Chr 17, John C. Schimenti 72
Gm28118 17 11545505 to 11545798 293 - pseudogene predicted gene 28118
Gm41525 17 11647900 to 11672949 25049 - lncRNA gene predicted gene, 41525
Gm10513 17 11725878 to 11732345 6467 - unclassified non-coding RNA gene predicted gene 10513
D17Jcs70 17 11775898 to 11776230 332 DNA segment DNA segment, Chr 17, John C. Schimenti 70
Tssr146414 17 11861190 to 11861192 2 - TSS region transcription start site region 146414
D17Ertd648e 17 11863070 to 11883189 20119 - lncRNA gene DNA segment, Chr 17, ERATO Doi 648, expressed
Gm46604 17 11959483 to 12031404 71921 - lncRNA gene predicted gene, 46604
Tssr146415 17 11973534 to 11973580 46 - TSS region transcription start site region 146415
D17Mit113 17 11979442 to 11979566 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 113
Circp2 17 11979442 to 11979566 124 QTL circadian photosensitivity 2
Nrq1a 17 11979442 to 11979566 124 QTL noise-induced hearing loss resistant QTL 1a
Nrq1 17 11979442 to 11979566 124 QTL noise-induced hearing loss resistant QTL 1
Obrq13 17 11979442 to 24857795 12878353 QTL obesity resistance QTL 13
Tssr142586 17 12044708 to 12044719 11 + TSS region transcription start site region 142586
Stheal11 17 12067324 to 83054339 70987015 QTL soft tissue heal 11
D17Mit245 17 12067324 to 12067523 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 245
Tssr142587 17 12092710 to 12092711 1 + TSS region transcription start site region 142587
Tssr146416 17 12108053 to 12108061 8 - TSS region transcription start site region 146416
Agpat4 17 12118709 to 12219649 100940 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
Cpgi8610 17 12118840 to 12119053 213 CpG island CpG island 8610
Tssr142588 17 12119154 to 12119180 26 + TSS region transcription start site region 142588
Tssr142589 17 12119251 to 12119265 14 + TSS region transcription start site region 142589
Tssr142590 17 12119274 to 12119348 74 + TSS region transcription start site region 142590
Tssr142591 17 12119350 to 12119361 11 + TSS region transcription start site region 142591
Tssr142592 17 12119365 to 12119377 12 + TSS region transcription start site region 142592
D17Jcs67 17 12150749 to 12150937 188 DNA segment DNA segment, Chr 17, John C. Schimenti 67
Tssr142593 17 12151705 to 12151723 18 + TSS region transcription start site region 142593
Tssr5004 17 12165846 to 12165850 4 + TSS region transcription start site region 5004
Tdgf1-ps2 17 12189910 to 12190445 535 + pseudogene teratocarcinoma-derived growth factor, pseudogene 2
Tssr142594 17 12195366 to 12195371 5 + TSS region transcription start site region 142594
Map3k4 17 12227621 to 12318796 91175 - protein coding gene mitogen-activated protein kinase kinase kinase 4
Gm46605 17 12264156 to 12270856 6700 + lncRNA gene predicted gene, 46605
D17Jcs66 17 12274244 to 12274424 180 DNA segment DNA segment, Chr 17, John C. Schimenti 66
Tssr146417 17 12276389 to 12276391 2 - TSS region transcription start site region 146417
Gm49962 17 12280117 to 12280534 417 + pseudogene predicted gene, 49962
Gm24794 17 12301036 to 12301175 139 + snoRNA gene predicted gene, 24794
Cpgi8611 17 12318008 to 12319137 1129 CpG island CpG island 8611
Tssr142595 17 12318069 to 12318074 5 + TSS region transcription start site region 142595
Tssr146418 17 12318672 to 12318684 12 - TSS region transcription start site region 146418
Tssr146419 17 12318704 to 12318713 9 - TSS region transcription start site region 146419
Tssr146420 17 12318767 to 12318803 36 - TSS region transcription start site region 146420
Tssr5005 17 12318807 to 12318815 8 - TSS region transcription start site region 5005
4732491K20Rik 17 12318853 to 12327250 8397 + bidirectional promoter lncRNA gene RIKEN cDNA 4732491K20 gene
Tssr142596 17 12318862 to 12318905 43 + TSS region transcription start site region 142596
Gm49964 17 12319015 to 12320728 1713 - lincRNA gene predicted gene, 49964
Gm6618 17 12356482 to 12357608 1126 + pseudogene predicted gene 6618
Gm41527 17 12359154 to 12370346 11192 - lncRNA gene predicted gene, 41527
Tssr142597 17 12378603 to 12378621 18 + TSS region transcription start site region 142597
tclLub2 17 12378609 to 12675838 297229 heritable phenotypic marker t-complex lethal Lub2
Plg 17 12378609 to 12419384 40775 + protein coding gene plasminogen
Tme 17 12378609 to 13018119 639510 heritable phenotypic marker T-associated maternal effect
Tssr142598 17 12378629 to 12378646 17 + TSS region transcription start site region 142598
Tssr142599 17 12378652 to 12378665 13 + TSS region transcription start site region 142599
Tssr142600 17 12382117 to 12382129 12 + TSS region transcription start site region 142600
Tssr142601 17 12382826 to 12382844 18 + TSS region transcription start site region 142601
Tssr142602 17 12384390 to 12384404 14 + TSS region transcription start site region 142602
Tssr142603 17 12390241 to 12390252 11 + TSS region transcription start site region 142603
Tssr142604 17 12390287 to 12390305 18 + TSS region transcription start site region 142604
Tssr142605 17 12391779 to 12391791 12 + TSS region transcription start site region 142605
Tssr142606 17 12391818 to 12391829 11 + TSS region transcription start site region 142606
Tssr146421 17 12393125 to 12393136 11 - TSS region transcription start site region 146421
Tssr142607 17 12393164 to 12393174 10 + TSS region transcription start site region 142607
Tssr142608 17 12395617 to 12395637 20 + TSS region transcription start site region 142608
Tssr146422 17 12395657 to 12395682 25 - TSS region transcription start site region 146422
Tssr142609 17 12396601 to 12396612 11 + TSS region transcription start site region 142609
Tssr142610 17 12396631 to 12396640 9 + TSS region transcription start site region 142610
Tssr142611 17 12403091 to 12403102 11 + TSS region transcription start site region 142611
Tssr142612 17 12404079 to 12404090 11 + TSS region transcription start site region 142612
Tssr142613 17 12409054 to 12409073 19 + TSS region transcription start site region 142613