Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:90402068-92292572

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nrxn1 17 90033631 to 91093071 1059440 - protein coding gene neurexin I
Tssr149839 17 90422332 to 90422343 11 - TSS region transcription start site region 149839
Tssr149840 17 90429250 to 90429256 6 - TSS region transcription start site region 149840
Tssr149841 17 90445094 to 90445103 9 - TSS region transcription start site region 149841
Tssr149842 17 90447650 to 90447659 9 - TSS region transcription start site region 149842
Tssr149843 17 90448706 to 90448713 7 - TSS region transcription start site region 149843
Cpgi9649 17 90454353 to 90456144 1791 CpG island CpG island 9649
Gm10493 17 90454889 to 90455498 609 + pseudogene predicted gene 10493
Gm32337 17 90455694 to 90465216 9522 + lncRNA gene predicted gene, 32337
Tssr149844 17 90455943 to 90456026 83 - TSS region transcription start site region 149844
Tssr149845 17 90456030 to 90456049 19 - TSS region transcription start site region 149845
Gm19815 17 90567423 to 90567757 334 - pseudogene predicted gene, 19815
Cpgi9650 17 90567756 to 90567907 151 CpG island CpG island 9650
Tssr149846 17 90599335 to 90599339 4 - TSS region transcription start site region 149846
Tssr149847 17 90603558 to 90603566 8 - TSS region transcription start site region 149847
Tssr149848 17 90606898 to 90606916 18 - TSS region transcription start site region 149848
Tssr149849 17 90607071 to 90607083 12 - TSS region transcription start site region 149849
Tssr149850 17 90607113 to 90607118 5 - TSS region transcription start site region 149850
Tssr149851 17 90611927 to 90611969 42 - TSS region transcription start site region 149851
Tssr149852 17 90622376 to 90622407 31 - TSS region transcription start site region 149852
Cpgi9651 17 90623418 to 90623679 261 CpG island CpG island 9651
Tssr149853 17 90658045 to 90658052 7 - TSS region transcription start site region 149853
Tssr149854 17 90747206 to 90747217 11 - TSS region transcription start site region 149854
C030011I16Rik 17 90764304 to 90765484 1180 unclassified gene RIKEN cDNA C030011I16 gene
Tssr149855 17 90789918 to 90789921 3 - TSS region transcription start site region 149855
Gm20491 17 90792442 to 90793476 1034 - pseudogene predicted gene 20491
Tssr149856 17 90798122 to 90798126 4 - TSS region transcription start site region 149856
Tssr149857 17 90800584 to 90800588 4 - TSS region transcription start site region 149857
9330164J24Rik 17 90800970 to 90803287 2317 unclassified gene RIKEN cDNA 9330164J24 gene
Tssr149858 17 90834235 to 90834240 5 - TSS region transcription start site region 149858
D17Mit244 17 90854524 to 90854645 121 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 244
4930480K15Rik 17 90861169 to 90867102 5933 + lncRNA gene RIKEN cDNA 4930480K15 gene
Tssr149859 17 90868022 to 90868025 3 - TSS region transcription start site region 149859
2900084O13Rik 17 90878110 to 90879367 1257 unclassified gene RIKEN cDNA 2900084O13 gene
Tssr149860 17 90958894 to 90958905 11 - TSS region transcription start site region 149860
Tssr149861 17 90980320 to 90980323 3 - TSS region transcription start site region 149861
Tssr149862 17 90992560 to 90992566 6 - TSS region transcription start site region 149862
Tssr149863 17 90995538 to 90995543 5 - TSS region transcription start site region 149863
Tssr149864 17 90995551 to 90995594 43 - TSS region transcription start site region 149864
Tssr149865 17 91024674 to 91024677 3 - TSS region transcription start site region 149865
9330159H11Rik 17 91025047 to 91038000 12953 - lncRNA gene RIKEN cDNA 9330159H11 gene
D17Mit96 17 91047347 to 91047495 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 96
D17Mit96.2 17 91047467 to 91047597 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 96.2
Tssr149866 17 91057369 to 91057372 3 - TSS region transcription start site region 149866
Tssr149867 17 91065198 to 91065201 3 - TSS region transcription start site region 149867
Cpgi9652 17 91087727 to 91089199 1472 CpG island CpG island 9652
Tssr146256 17 91088212 to 91088215 3 + TSS region transcription start site region 146256
Gm47307 17 91088406 to 91088550 144 + miRNA gene predicted gene, 47307
Gm10308 17 91088493 to 91089391 898 + protein coding gene predicted gene 10308
Tssr149868 17 91088823 to 91088858 35 - TSS region transcription start site region 149868
Tssr146257 17 91088852 to 91088885 33 + TSS region transcription start site region 146257
Tssr149869 17 91088985 to 91089014 29 - TSS region transcription start site region 149869
Cpgi9653 17 91092629 to 91092969 340 CpG island CpG island 9653
Tssr149870 17 91092715 to 91092822 107 - TSS region transcription start site region 149870
Tssr149871 17 91092823 to 91092858 35 - TSS region transcription start site region 149871
Tssr149872 17 91092860 to 91092877 17 - TSS region transcription start site region 149872
Tssr149873 17 91092984 to 91092995 11 - TSS region transcription start site region 149873
Tssr149874 17 91093018 to 91093029 11 - TSS region transcription start site region 149874
Tssr149875 17 91093070 to 91093077 7 - TSS region transcription start site region 149875
Gm9410 17 91106046 to 91107296 1250 + pseudogene predicted gene 9410
Gm27475 17 91106210 to 91106270 60 + miRNA gene predicted gene, 27475
Gm9411 17 91125116 to 91126194 1078 + pseudogene predicted gene 9411
Gm6741 17 91236811 to 91237557 746 + pseudogene predicted gene 6741
Gm49988 17 91347068 to 91347572 504 - pseudogene predicted gene, 49988
Gm49989 17 91536275 to 91536590 315 - pseudogene predicted gene, 49989
Gm49990 17 91548119 to 91548511 392 + pseudogene predicted gene, 49990
Gm15404 17 91557127 to 91591927 34800 + lincRNA gene predicted gene 15404
Gm49991 17 91566104 to 91628471 62367 + lincRNA gene predicted gene, 49991
D17Mit154 17 91585552 to 91585674 122 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 154
Gm15403 17 91667079 to 91668305 1226 + pseudogene predicted gene 15403
Gm49992 17 91781285 to 91782437 1152 - pseudogene predicted gene, 49992
Gm49993 17 91782635 to 91783133 498 - pseudogene predicted gene, 49993
Gm24244 17 91812491 to 91812620 129 - snoRNA gene predicted gene, 24244
Gm41654 17 91848260 to 91862069 13809 - lncRNA gene predicted gene, 41654
Gm44345 17 91862602 to 91862736 134 + miRNA gene predicted gene, 44345
Gm49994 17 92181065 to 92181398 333 + pseudogene predicted gene, 49994
Gm19145 17 92185388 to 92185957 569 - pseudogene predicted gene, 19145